Wall clock time and date at job start Mon Mar 30 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35988 * 117.00124 * 2 1 4 4 C 1.38569 * 120.07155 * 269.97257 * 3 2 1 5 5 C 1.50700 * 119.99818 * 0.04352 * 4 3 2 6 6 C 1.38237 * 120.00029 * 179.97438 * 4 3 2 7 7 C 1.38258 * 120.14715 * 0.04946 * 6 4 3 8 8 C 1.50704 * 119.92851 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.47084 * 339.97933 * 8 7 6 10 10 N 1.46896 * 109.47165 * 219.97736 * 8 7 6 11 11 C 1.52999 * 109.46735 * 99.97639 * 8 7 6 12 12 C 1.50701 * 109.46917 * 185.00093 * 11 8 7 13 13 H 1.08006 * 119.99974 * 0.02562 * 12 11 8 14 14 C 1.37875 * 120.00372 * 180.02562 * 12 11 8 15 15 N 1.31517 * 119.99726 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00287 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46972 * 60.00301 * 16 14 12 18 18 H 1.48497 * 109.46925 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47337 * 299.99965 * 16 14 12 20 20 C 1.38238 * 120.14613 * 359.95354 * 7 6 4 21 21 C 1.38565 * 119.99937 * 0.02562 * 20 7 6 22 22 O 1.35994 * 120.07302 * 179.72955 * 21 20 7 23 23 H 1.08992 * 109.47500 * 300.00134 * 1 2 3 24 24 H 1.09002 * 109.46936 * 60.00779 * 1 2 3 25 25 H 1.09005 * 109.46992 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47355 * 269.95323 * 5 4 3 27 27 H 1.08997 * 109.46987 * 29.95961 * 5 4 3 28 28 H 1.09002 * 109.46960 * 149.95650 * 5 4 3 29 29 H 1.07997 * 119.93299 * 180.02562 * 6 4 3 30 30 H 1.00896 * 110.99980 * 300.00230 * 10 8 7 31 31 H 1.00898 * 110.99903 * 63.95720 * 10 8 7 32 32 H 1.09003 * 109.47353 * 304.99835 * 11 8 7 33 33 H 1.08994 * 109.47084 * 65.00571 * 11 8 7 34 34 H 0.96999 * 119.99931 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.00579 * 180.02562 * 20 7 6 36 36 H 0.96700 * 114.00901 * 89.99833 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3621 1.8300 -1.1992 5 6 2.0204 1.1603 -2.5052 6 6 2.9893 3.0620 -1.1975 7 6 3.3038 3.6794 -0.0010 8 6 3.9880 5.0221 -0.0049 9 1 4.4654 5.1839 -0.9714 10 7 5.0043 5.0569 1.0552 11 6 2.9539 6.1220 0.2436 12 6 3.6149 7.4705 0.1181 13 1 4.6672 7.5364 -0.1160 14 6 2.8764 8.6202 0.3020 15 7 1.5951 8.5399 0.5875 16 14 3.6959 10.2916 0.1471 17 1 4.2593 10.4419 -1.2185 18 1 2.6922 11.3592 0.3882 19 1 4.7873 10.4025 1.1479 20 6 2.9916 3.0679 1.1988 21 6 2.3626 1.8332 1.2042 22 8 2.0598 1.2278 2.3837 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.8536 0.5323 -2.8204 27 1 1.1302 0.5449 -2.3759 28 1 1.8303 1.9194 -3.2640 29 1 3.2345 3.5431 -2.1327 30 1 4.5865 4.9093 1.9616 31 1 5.7337 4.3824 0.8790 32 1 2.1528 6.0403 -0.4910 33 1 2.5403 6.0121 1.2460 34 1 1.0756 9.3487 0.7173 35 1 3.2380 3.5524 2.1321 36 1 1.1851 1.4537 2.7287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260315378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:52 Heat of formation + Delta-G solvation = -90.205515 kcal Electronic energy + Delta-G solvation = -18389.829213 eV Core-core repulsion = 15452.063026 eV Total energy + Delta-G solvation = -2937.766187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53068 -39.00521 -38.23500 -36.43586 -34.54910 -32.64740 -30.68509 -30.08917 -28.46801 -27.22394 -25.95159 -23.46700 -23.22324 -20.88401 -19.21004 -18.58635 -18.39752 -17.77791 -16.83666 -16.63159 -16.22562 -15.96613 -15.65218 -15.15476 -14.68159 -14.49597 -14.22068 -14.18188 -13.80555 -13.27256 -13.12690 -12.93649 -12.82036 -12.62290 -12.59399 -12.34189 -12.13030 -11.91575 -11.39071 -11.23071 -10.80724 -10.50501 -9.66598 -9.55957 -9.31104 -8.11621 -6.17800 0.07999 0.18747 1.43798 1.46590 1.54123 2.33706 2.48460 2.80446 3.09594 3.21879 3.76408 3.82479 3.90662 4.24408 4.28007 4.41067 4.43452 4.45827 4.47368 4.63121 4.72424 4.78221 4.87386 4.95556 5.14973 5.20248 5.35550 5.45786 5.48356 5.65575 5.70974 5.86831 6.28601 6.31892 6.48233 6.77304 6.79023 6.96010 7.48919 9.00042 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.031389 B = 0.005006 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.818023 B = 5591.434710 C = 5709.681471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C 0.048 3.952 4 C -0.089 4.089 5 C -0.106 4.106 6 C -0.118 4.118 7 C -0.095 4.095 8 C 0.146 3.854 9 H 0.079 0.921 10 N -0.828 5.828 11 C 0.047 3.953 12 C -0.508 4.508 13 H 0.061 0.939 14 C -0.004 4.004 15 N -0.939 5.939 16 Si 0.960 3.040 17 H -0.268 1.268 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.147 4.147 21 C 0.088 3.912 22 O -0.497 6.497 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.337 0.663 31 H 0.341 0.659 32 H -0.006 1.006 33 H -0.010 1.010 34 H 0.260 0.740 35 H 0.127 0.873 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -16.436 -2.686 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.256 6.256 3 C 0.004 3.996 4 C -0.089 4.089 5 C -0.162 4.162 6 C -0.137 4.137 7 C -0.098 4.098 8 C 0.034 3.966 9 H 0.097 0.903 10 N -0.357 5.357 11 C 0.009 3.991 12 C -0.546 4.546 13 H 0.080 0.920 14 C -0.200 4.200 15 N -0.581 5.581 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.166 4.166 21 C 0.042 3.958 22 O -0.309 6.309 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.135 0.865 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.012 0.988 33 H 0.009 0.991 34 H 0.068 0.932 35 H 0.145 0.855 36 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.092 -15.988 -2.929 16.290 hybrid contribution -0.858 0.477 0.571 1.135 sum -1.949 -15.510 -2.358 15.809 Atomic orbital electron populations 1.23217 0.77747 1.04781 1.01080 1.86056 1.21247 1.23944 1.94387 1.18864 1.00979 0.88237 0.91564 1.20368 0.98472 0.94238 0.95869 1.20751 1.02694 1.00688 0.92097 1.21095 0.99700 0.94611 0.98291 1.21092 0.98116 0.97371 0.93185 1.20409 0.91715 0.88818 0.95667 0.90302 1.58764 1.14265 1.58048 1.04600 1.18929 0.92795 0.92653 0.94701 1.21477 0.95861 0.91488 1.45751 0.92042 1.25880 0.95381 1.03222 0.95542 1.70091 1.07992 1.29392 1.50638 0.85571 0.78004 0.78905 0.78934 1.19332 1.21295 1.19699 1.21149 1.02218 0.94433 0.98750 1.18740 1.00364 0.91224 0.85431 1.84806 1.40808 1.70195 1.35069 0.93450 0.92964 0.86451 0.89851 0.90754 0.90120 0.84215 0.84938 0.84650 0.98754 0.99122 0.93167 0.85523 0.73947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.76 113.37 1.22 1.68 16 2 O -0.34 -8.89 9.41 -79.55 -0.75 -9.63 16 3 C 0.05 1.40 5.71 22.57 0.13 1.53 16 4 C -0.09 -2.48 5.89 -19.79 -0.12 -2.60 16 5 C -0.11 -2.19 9.79 71.24 0.70 -1.49 16 6 C -0.12 -3.67 9.32 22.27 0.21 -3.46 16 7 C -0.10 -3.32 4.95 -19.86 -0.10 -3.42 16 8 C 0.15 5.83 2.93 44.17 0.13 5.96 16 9 H 0.08 3.15 8.00 -2.39 -0.02 3.13 16 10 N -0.83 -30.38 8.77 -171.80 -1.51 -31.89 16 11 C 0.05 2.40 4.60 29.85 0.14 2.54 16 12 C -0.51 -28.60 8.84 25.60 0.23 -28.38 16 13 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 15 N -0.94 -57.20 13.29 21.45 0.28 -56.92 16 16 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 C -0.15 -4.89 9.23 22.35 0.21 -4.68 16 21 C 0.09 2.71 6.72 22.57 0.15 2.86 16 22 O -0.50 -13.55 13.29 -79.62 -1.06 -14.61 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.88 7.26 -2.39 -0.02 0.86 16 25 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.40 6.32 -2.39 -0.02 1.38 16 28 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 29 H 0.14 3.93 8.03 -2.91 -0.02 3.91 16 30 H 0.34 12.05 7.34 -89.70 -0.66 11.39 16 31 H 0.34 10.47 9.06 -89.70 -0.81 9.66 16 32 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.13 4.18 6.66 -2.91 -0.02 4.16 16 36 H 0.40 7.31 9.06 -74.06 -0.67 6.64 16 Total: -1.00 -69.08 306.37 1.32 -67.76 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -1.03 Total: 27.49 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.35 Total: -29.24 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -1.22 Total: -88.81 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.81 Total: -24.24 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.08 1.32 -67.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.446 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds