Wall clock time and date at job start Mon Mar 30 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 C 1.50704 * 109.47157 * 240.00210 * 2 1 3 5 5 N 1.30306 * 126.88768 * 64.78803 * 4 2 1 6 6 O 1.21002 * 111.56116 * 179.79765 * 5 4 2 7 7 C 1.34135 * 111.52965 * 0.46652 * 6 5 4 8 8 C 1.35044 * 106.27964 * 359.74341 * 7 6 5 9 9 C 1.50681 * 110.64508 * 179.97438 * 8 7 6 10 10 O 1.42900 * 110.34109 * 224.47901 * 9 8 7 11 11 C 1.50700 * 110.34074 * 102.22673 * 9 8 7 12 12 H 1.08000 * 120.00077 * 334.74992 * 11 9 8 13 13 C 1.37881 * 120.00197 * 154.74772 * 11 9 8 14 14 N 1.31508 * 119.99524 * 6.59553 * 13 11 9 15 15 Si 1.86794 * 120.00010 * 186.58941 * 13 11 9 16 16 H 1.48495 * 109.47084 * 60.00553 * 15 13 11 17 17 H 1.48506 * 109.46913 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47563 * 300.00261 * 15 13 11 19 19 C 1.54557 * 104.96606 * 343.36563 * 9 8 7 20 20 H 1.09001 * 110.95799 * 267.12323 * 19 9 8 21 21 C 1.53002 * 110.93774 * 143.47526 * 19 9 8 22 22 C 1.51101 * 143.60949 * 179.79175 * 7 6 5 23 23 H 1.08997 * 109.46795 * 299.99876 * 1 2 3 24 24 H 1.09001 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47094 * 59.99634 * 1 2 3 26 26 H 1.09000 * 109.47094 * 120.00366 * 2 1 3 27 27 H 1.08997 * 109.47232 * 60.00391 * 3 2 1 28 28 H 1.09004 * 109.47208 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47482 * 300.00129 * 3 2 1 30 30 H 0.96694 * 114.00236 * 298.54641 * 10 9 8 31 31 H 0.97000 * 119.99789 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.46782 * 301.71073 * 21 19 9 33 33 H 1.08996 * 109.47561 * 61.70936 * 21 19 9 34 34 H 1.08995 * 109.47232 * 181.71813 * 21 19 9 35 35 H 1.09001 * 110.31859 * 315.63013 * 22 7 6 36 36 H 1.08999 * 110.31817 * 77.82672 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.8745 -0.3364 -2.4688 6 8 2.3954 -1.1123 -3.2374 7 6 2.9733 -2.1345 -2.5890 8 6 2.7619 -1.9160 -1.2732 9 6 3.3756 -3.0163 -0.4466 10 8 2.4685 -3.4350 0.5751 11 6 4.6739 -2.5525 0.1619 12 1 5.2392 -1.7620 -0.3093 13 6 5.1401 -3.1372 1.3203 14 7 4.5227 -4.1839 1.8230 15 14 6.6487 -2.4427 2.1754 16 1 6.3924 -1.0325 2.5635 17 1 6.9426 -3.2452 3.3899 18 1 7.8107 -2.4988 1.2524 19 6 3.6315 -4.1692 -1.4438 20 1 2.7890 -4.8605 -1.4650 21 6 4.9303 -4.9048 -1.1074 22 6 3.7571 -3.4115 -2.7843 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 2.2352 -2.7383 1.2036 31 1 4.8509 -4.5955 2.6377 32 1 5.7622 -4.2007 -1.1272 33 1 4.8512 -5.3460 -0.1139 34 1 5.1028 -5.6916 -1.8417 35 1 3.3260 -4.0000 -3.5942 36 1 4.8025 -3.1856 -2.9943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260741937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:16 Heat of formation + Delta-G solvation = 4.087545 kcal Electronic energy + Delta-G solvation = -19739.711612 eV Core-core repulsion = 16806.034279 eV Total energy + Delta-G solvation = -2933.677333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.77243 -39.74186 -37.19891 -35.58794 -34.20061 -32.85291 -31.77340 -28.80897 -28.09548 -27.42224 -25.75437 -24.06366 -22.59722 -20.92394 -19.93152 -18.85402 -18.30762 -18.04781 -16.63906 -16.48871 -15.94377 -15.51110 -15.33590 -14.81811 -14.24379 -14.09553 -13.73477 -13.50659 -13.17516 -13.13838 -12.95328 -12.90593 -12.70885 -12.29251 -12.25329 -12.15404 -12.05541 -11.85423 -11.73719 -11.49724 -11.12162 -10.70023 -10.51343 -10.26919 -9.70623 -7.96165 -6.18174 0.61535 1.40869 1.43347 1.47733 1.52855 1.79206 2.45690 3.19606 3.30069 3.67945 3.76258 3.92526 4.17723 4.19821 4.28086 4.28978 4.53844 4.56657 4.72178 4.76608 4.87125 4.93890 4.97059 5.02205 5.07819 5.13002 5.15809 5.27900 5.28521 5.41980 5.59849 5.71906 5.74804 6.03163 6.16953 6.74436 7.36939 7.38330 7.59943 8.98994 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.010265 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.016156 B = 2727.060559 C = 3409.716290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 C -0.134 4.134 4 C 0.045 3.955 5 N -0.387 5.387 6 O 0.094 5.906 7 C -0.080 4.080 8 C -0.239 4.239 9 C 0.317 3.683 10 O -0.547 6.547 11 C -0.555 4.555 12 H 0.038 0.962 13 C 0.056 3.944 14 N -0.860 5.860 15 Si 0.928 3.072 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.275 1.275 19 C -0.064 4.064 20 H 0.061 0.939 21 C -0.111 4.111 22 C -0.005 4.005 23 H 0.088 0.912 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.353 0.647 31 H 0.258 0.742 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 3.626 -3.965 6.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.038 4.038 3 C -0.191 4.191 4 C -0.113 4.113 5 N -0.095 5.095 6 O 0.032 5.968 7 C -0.144 4.144 8 C -0.243 4.243 9 C 0.275 3.725 10 O -0.349 6.349 11 C -0.593 4.593 12 H 0.057 0.943 13 C -0.148 4.148 14 N -0.495 5.495 15 Si 0.754 3.246 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.200 1.200 19 C -0.083 4.083 20 H 0.080 0.920 21 C -0.168 4.168 22 C -0.043 4.043 23 H 0.107 0.893 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.197 0.803 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.126 0.874 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.669 3.925 -4.745 7.169 hybrid contribution 1.164 0.501 1.329 1.836 sum -2.506 4.426 -3.416 6.126 Atomic orbital electron populations 1.21743 0.92298 1.01894 1.02999 1.19666 0.97045 0.95912 0.91163 1.21741 1.00361 0.94004 1.03024 1.23089 0.99424 0.94471 0.94279 1.73836 1.18910 1.14740 1.02055 1.84522 1.52858 1.26255 1.33201 1.25583 1.01085 0.95519 0.92236 1.23465 1.02784 0.99162 0.98929 1.17843 0.86075 0.85069 0.83465 1.86418 1.65405 1.40673 1.42404 1.21252 1.06847 1.20498 1.10696 0.94329 1.25320 0.98077 0.94283 0.97165 1.70235 1.39631 1.19382 1.20243 0.86117 0.81491 0.78530 0.78442 1.20504 1.20939 1.20035 1.21935 0.98819 0.96036 0.91540 0.92025 1.21482 0.95579 0.98525 1.01264 1.20876 0.98236 0.85811 0.99385 0.89303 0.93405 0.92775 0.89812 0.89355 0.94120 0.92576 0.80313 0.93252 0.93222 0.92405 0.92879 0.87402 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.18 71.98 0.66 -3.01 16 2 C -0.02 -0.62 3.36 -11.54 -0.04 -0.66 16 3 C -0.13 -3.92 9.17 71.98 0.66 -3.26 16 4 C 0.05 1.83 5.84 43.46 0.25 2.08 16 5 N -0.39 -15.64 12.07 -49.48 -0.60 -16.24 16 6 O 0.09 3.74 11.21 70.63 0.79 4.53 16 7 C -0.08 -3.22 8.39 25.08 0.21 -3.01 16 8 C -0.24 -10.51 6.04 -19.93 -0.12 -10.63 16 9 C 0.32 14.83 0.91 -11.76 -0.01 14.82 16 10 O -0.55 -27.16 11.10 -148.98 -1.65 -28.81 16 11 C -0.56 -27.96 6.48 25.60 0.17 -27.80 16 12 H 0.04 2.04 7.82 -2.91 -0.02 2.01 16 13 C 0.06 2.83 4.50 84.66 0.38 3.21 16 14 N -0.86 -44.77 10.14 21.45 0.22 -44.55 16 15 Si 0.93 40.59 29.54 68.60 2.03 42.61 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 C -0.06 -2.66 3.34 -9.76 -0.03 -2.69 16 20 H 0.06 2.58 8.11 -2.39 -0.02 2.56 16 21 C -0.11 -4.55 7.91 71.98 0.57 -3.98 16 22 C -0.01 -0.18 6.34 30.48 0.19 0.01 16 23 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.08 2.95 7.66 -2.39 -0.02 2.94 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.35 16.64 8.59 -74.06 -0.64 16.00 16 31 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 32 H 0.05 2.11 6.84 -2.38 -0.02 2.09 16 33 H 0.06 2.72 6.22 -2.39 -0.01 2.70 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.10 3.29 7.85 -2.39 -0.02 3.27 16 Total: -1.00 -57.56 293.36 4.12 -53.44 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.45 Total: 23.93 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 2.89 Total: -34.92 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.38 Total: -60.79 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.86 Total: -24.28 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -57.56 4.12 -53.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260741937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.525 kcal (2) G-P(sol) polarization free energy of solvation -57.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds