Wall clock time and date at job start Mon Mar 30 2020 06:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.06686 * 2 1 4 4 C 1.53985 * 109.91981 * 238.79180 * 2 1 3 5 5 H 1.09003 * 110.30751 * 120.50549 * 4 2 1 6 6 C 1.52999 * 110.30881 * 358.34400 * 4 2 1 7 7 F 1.39907 * 109.46965 * 302.35985 * 6 4 2 8 8 F 1.39894 * 109.47609 * 62.35502 * 6 4 2 9 9 F 1.39904 * 109.47347 * 182.36065 * 6 4 2 10 10 C 1.54592 * 105.14404 * 239.42472 * 4 2 1 11 11 C 1.54943 * 102.92084 * 338.04113 * 10 4 2 12 12 N 1.47904 * 109.91292 * 121.20408 * 2 1 3 13 13 C 1.46903 * 111.00088 * 265.19503 * 12 2 1 14 14 C 1.52995 * 109.47157 * 170.00131 * 13 12 2 15 15 C 1.50702 * 109.47115 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99937 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00025 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99845 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99998 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46546 * 90.00751 * 19 17 15 21 21 H 1.48500 * 109.47031 * 210.00489 * 19 17 15 22 22 H 1.48497 * 109.46913 * 330.00635 * 19 17 15 23 23 H 1.08999 * 109.47425 * 184.50336 * 1 2 3 24 24 H 1.09004 * 109.47006 * 304.51092 * 1 2 3 25 25 H 1.09005 * 109.46576 * 64.50550 * 1 2 3 26 26 H 1.08999 * 110.72725 * 96.39703 * 10 4 2 27 27 H 1.08999 * 110.72483 * 219.68398 * 10 4 2 28 28 H 1.08994 * 110.66597 * 155.84696 * 11 10 4 29 29 H 1.08997 * 110.66467 * 278.98235 * 11 10 4 30 30 H 1.09001 * 109.47076 * 290.00318 * 13 12 2 31 31 H 1.09002 * 109.47085 * 50.00433 * 13 12 2 32 32 H 1.09001 * 109.47280 * 300.00062 * 14 13 12 33 33 H 1.08999 * 109.47188 * 60.00590 * 14 13 12 34 34 H 0.97004 * 120.00191 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7501 -1.2382 5 1 2.6714 -0.0895 -1.8476 6 6 0.8871 -1.2975 -2.0617 7 9 0.1057 -2.1380 -1.2615 8 9 0.1043 -0.2346 -2.5249 9 9 1.3836 -2.0206 -3.1516 10 6 2.9059 -1.9117 -0.6761 11 6 3.2681 -1.4185 0.7474 12 7 2.0338 -0.7205 1.1894 13 6 2.3211 0.2123 2.2874 14 6 2.5978 -0.5774 3.5682 15 6 2.8919 0.3794 4.6947 16 1 2.8828 1.4443 4.5149 17 6 3.1736 -0.1046 5.9546 18 7 3.4298 0.7305 6.9377 19 14 3.1900 -1.9465 6.2654 20 1 4.5566 -2.4764 6.0272 21 1 2.7931 -2.2149 7.6710 22 1 2.2335 -2.6123 5.3451 23 1 -0.3634 -1.0245 0.0807 24 1 -0.3633 0.5823 0.8469 25 1 -0.3633 0.4424 -0.9277 26 1 2.3214 -2.8305 -0.6288 27 1 3.8052 -2.0558 -1.2749 28 1 3.4888 -2.2615 1.4020 29 1 4.1097 -0.7267 0.7122 30 1 3.1950 0.8127 2.0347 31 1 1.4631 0.8666 2.4422 32 1 1.7238 -1.1779 3.8209 33 1 3.4557 -1.2317 3.4135 34 1 3.6277 0.3900 7.8243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348243452.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:20 Heat of formation + Delta-G solvation = -144.632945 kcal Electronic energy + Delta-G solvation = -19508.547964 eV Core-core repulsion = 16026.564886 eV Total energy + Delta-G solvation = -3481.983078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -50.34559 -47.77763 -47.68140 -39.17530 -34.10117 -32.29058 -31.34975 -29.59749 -26.87403 -24.35585 -24.02500 -21.64972 -20.35555 -20.04046 -18.64927 -18.39182 -17.08023 -16.87289 -15.73303 -15.10342 -14.74571 -14.49411 -14.34375 -14.23088 -14.11558 -14.01256 -13.78757 -13.22324 -12.88041 -12.73794 -12.50121 -11.98871 -11.77889 -11.43853 -11.30986 -11.13868 -10.96756 -10.86901 -10.62633 -9.94705 -9.87989 -9.74122 -9.23106 -8.54153 -8.08505 -6.05471 -4.03932 2.67509 3.31248 3.39261 3.45510 3.68595 3.80905 3.94223 4.20284 4.45639 4.58174 4.61313 4.96638 5.16244 5.29296 5.31906 5.45460 5.55739 5.61015 5.86159 5.92428 5.96775 6.07417 6.17744 6.23078 6.47757 6.73222 7.09403 7.12647 7.42793 7.57026 7.81682 8.51249 8.98240 9.57040 11.07867 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.043015 B = 0.005214 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.785387 B = 5368.939209 C = 5561.518100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.073 3.927 3 H 0.064 0.936 4 C -0.145 4.145 5 H 0.115 0.885 6 C 0.464 3.536 7 F -0.169 7.169 8 F -0.180 7.180 9 F -0.187 7.187 10 C -0.118 4.118 11 C 0.039 3.961 12 N -0.512 5.512 13 C 0.063 3.937 14 C -0.004 4.004 15 C -0.523 4.523 16 H 0.070 0.930 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.262 1.262 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.010 0.990 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -4.575 -19.417 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.036 4.036 3 H 0.082 0.918 4 C -0.165 4.165 5 H 0.133 0.867 6 C 0.409 3.591 7 F -0.151 7.151 8 F -0.162 7.162 9 F -0.169 7.169 10 C -0.156 4.156 11 C -0.089 4.089 12 N -0.237 5.237 13 C -0.064 4.064 14 C -0.042 4.042 15 C -0.561 4.561 16 H 0.088 0.912 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.707 3.293 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.187 1.187 23 H 0.106 0.894 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.029 0.971 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.462 -4.930 -19.034 19.965 hybrid contribution 0.524 -0.271 -0.056 0.592 sum -2.938 -5.201 -19.090 20.002 Atomic orbital electron populations 1.22884 0.93766 1.05251 1.03438 1.22249 0.97060 0.96159 0.88085 0.91773 1.23449 0.94388 1.00648 0.98013 0.86682 1.20378 0.84547 0.75818 0.78311 1.93108 1.76617 1.72704 1.72629 1.93055 1.77056 1.56540 1.89511 1.93167 1.87462 1.79076 1.57157 1.22602 0.99332 0.96787 0.96836 1.23212 0.92245 0.99351 0.94064 1.64890 1.26286 1.27277 1.05213 1.22326 0.99204 0.93798 0.91070 1.19505 0.96555 0.96172 0.91974 1.21080 1.47760 0.94508 0.92753 0.91174 1.24989 0.94502 0.97808 0.96006 1.69914 1.48245 1.34548 1.01581 0.86771 0.78850 0.86216 0.77479 1.20388 1.21412 1.18678 0.89383 0.91819 0.90515 0.89691 0.89886 0.89168 0.93203 0.95156 0.91329 0.95643 0.97145 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 8.20 37.16 0.30 -2.33 16 2 C 0.07 1.00 3.00 -66.64 -0.20 0.80 16 3 H 0.06 0.86 7.77 -51.93 -0.40 0.45 16 4 C -0.14 -1.61 3.01 -89.27 -0.27 -1.88 16 5 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 6 C 0.46 5.31 2.32 37.16 0.09 5.40 16 7 F -0.17 -2.19 13.39 2.25 0.03 -2.16 16 8 F -0.18 -2.08 14.32 2.25 0.03 -2.04 16 9 F -0.19 -2.11 17.12 2.25 0.04 -2.07 16 10 C -0.12 -1.31 6.34 -24.87 -0.16 -1.47 16 11 C 0.04 0.56 5.91 -1.89 -0.01 0.54 16 12 N -0.51 -8.46 4.88 -222.57 -1.09 -9.55 16 13 C 0.06 1.24 4.64 -3.83 -0.02 1.22 16 14 C 0.00 -0.10 4.13 -27.88 -0.12 -0.22 16 15 C -0.52 -14.83 9.66 -34.44 -0.33 -15.17 16 16 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 19 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 23 H 0.09 1.26 5.49 -51.93 -0.29 0.97 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 0.92 5.26 -51.93 -0.27 0.65 16 26 H 0.08 0.98 7.33 -51.93 -0.38 0.60 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.34 7.80 -51.93 -0.41 0.93 16 29 H 0.05 0.69 7.81 -51.93 -0.41 0.29 16 30 H 0.03 0.59 7.83 -51.93 -0.41 0.19 16 31 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 32 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 33 H 0.01 0.24 6.80 -51.93 -0.35 -0.11 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 276.68 15.07 4.17 4.17 Total: -1.00 -30.17 276.68 -6.08 -36.25 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.56 Total: -3.43 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -0.81 Total: -11.20 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.31 Total: -36.66 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.10 Total: -6.27 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.17 -6.08 -36.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348243452.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.380 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds