Wall clock time and date at job start Mon Mar 30 2020 06:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.06686 * 2 1 4 4 C 1.53985 * 109.91981 * 238.79180 * 2 1 3 5 5 H 1.09003 * 110.30751 * 120.50549 * 4 2 1 6 6 C 1.52999 * 110.30881 * 358.34400 * 4 2 1 7 7 F 1.39907 * 109.46965 * 302.35985 * 6 4 2 8 8 F 1.39894 * 109.47609 * 62.35502 * 6 4 2 9 9 F 1.39904 * 109.47347 * 182.36065 * 6 4 2 10 10 C 1.54592 * 105.14404 * 239.42472 * 4 2 1 11 11 C 1.54943 * 102.92084 * 338.04113 * 10 4 2 12 12 N 1.47904 * 109.91292 * 121.20408 * 2 1 3 13 13 C 1.46903 * 111.00088 * 265.19503 * 12 2 1 14 14 C 1.52995 * 109.47157 * 170.00131 * 13 12 2 15 15 C 1.50702 * 109.47115 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99937 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00025 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99845 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99998 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46546 * 90.00751 * 19 17 15 21 21 H 1.48500 * 109.47031 * 210.00489 * 19 17 15 22 22 H 1.48497 * 109.46913 * 330.00635 * 19 17 15 23 23 H 1.08999 * 109.47425 * 184.50336 * 1 2 3 24 24 H 1.09004 * 109.47006 * 304.51092 * 1 2 3 25 25 H 1.09005 * 109.46576 * 64.50550 * 1 2 3 26 26 H 1.08999 * 110.72725 * 96.39703 * 10 4 2 27 27 H 1.08999 * 110.72483 * 219.68398 * 10 4 2 28 28 H 1.08994 * 110.66597 * 155.84696 * 11 10 4 29 29 H 1.08997 * 110.66467 * 278.98235 * 11 10 4 30 30 H 1.09001 * 109.47076 * 290.00318 * 13 12 2 31 31 H 1.09002 * 109.47085 * 50.00433 * 13 12 2 32 32 H 1.09001 * 109.47280 * 300.00062 * 14 13 12 33 33 H 1.08999 * 109.47188 * 60.00590 * 14 13 12 34 34 H 0.97004 * 120.00191 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7501 -1.2382 5 1 2.6714 -0.0895 -1.8476 6 6 0.8871 -1.2975 -2.0617 7 9 0.1057 -2.1380 -1.2615 8 9 0.1043 -0.2346 -2.5249 9 9 1.3836 -2.0206 -3.1516 10 6 2.9059 -1.9117 -0.6761 11 6 3.2681 -1.4185 0.7474 12 7 2.0338 -0.7205 1.1894 13 6 2.3211 0.2123 2.2874 14 6 2.5978 -0.5774 3.5682 15 6 2.8919 0.3794 4.6947 16 1 2.8828 1.4443 4.5149 17 6 3.1736 -0.1046 5.9546 18 7 3.4298 0.7305 6.9377 19 14 3.1900 -1.9465 6.2654 20 1 4.5566 -2.4764 6.0272 21 1 2.7931 -2.2149 7.6710 22 1 2.2335 -2.6123 5.3451 23 1 -0.3634 -1.0245 0.0807 24 1 -0.3633 0.5823 0.8469 25 1 -0.3633 0.4424 -0.9277 26 1 2.3214 -2.8305 -0.6288 27 1 3.8052 -2.0558 -1.2749 28 1 3.4888 -2.2615 1.4020 29 1 4.1097 -0.7267 0.7122 30 1 3.1950 0.8127 2.0347 31 1 1.4631 0.8666 2.4422 32 1 1.7238 -1.1779 3.8209 33 1 3.4557 -1.2317 3.4135 34 1 3.6277 0.3900 7.8243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348243452.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:17 Heat of formation + Delta-G solvation = -163.978839 kcal Electronic energy + Delta-G solvation = -19509.386864 eV Core-core repulsion = 16026.564886 eV Total energy + Delta-G solvation = -3482.821979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -51.25001 -48.65818 -48.60935 -40.31600 -35.82064 -34.12522 -32.39055 -31.26684 -28.09015 -25.95438 -25.12164 -22.99675 -21.66846 -21.34039 -19.57277 -19.29739 -18.98736 -17.99079 -16.92580 -16.48809 -16.03746 -15.77305 -15.56702 -15.37245 -15.14605 -15.11882 -14.75141 -14.68766 -14.43388 -14.01447 -13.83796 -13.36673 -13.14686 -12.81317 -12.69156 -12.40817 -12.25201 -11.91923 -11.82216 -11.70266 -11.57409 -11.49977 -11.39027 -10.76161 -9.37539 -8.30259 -6.34476 1.35491 1.38734 1.51599 1.77923 2.36428 2.78926 2.86532 2.98385 3.05727 3.08200 3.62109 3.65538 4.07142 4.19294 4.27989 4.34585 4.41822 4.47286 4.67415 4.75551 4.83680 4.93681 4.97486 5.01661 5.06657 5.30409 5.39396 5.44012 5.63171 6.01231 6.09898 6.28386 6.73324 7.30649 8.86445 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.043015 B = 0.005214 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.785387 B = 5368.939209 C = 5561.518100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.069 3.931 3 H 0.069 0.931 4 C -0.138 4.138 5 H 0.144 0.856 6 C 0.466 3.534 7 F -0.180 7.180 8 F -0.180 7.180 9 F -0.183 7.183 10 C -0.108 4.108 11 C 0.032 3.968 12 N -0.526 5.526 13 C 0.077 3.923 14 C 0.003 3.997 15 C -0.533 4.533 16 H 0.032 0.968 17 C 0.008 3.992 18 N -0.951 5.951 19 Si 0.950 3.050 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.250 1.250 23 H 0.080 0.920 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.722 -6.194 -21.324 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.040 4.040 3 H 0.087 0.913 4 C -0.157 4.157 5 H 0.162 0.838 6 C 0.412 3.588 7 F -0.161 7.161 8 F -0.162 7.162 9 F -0.165 7.165 10 C -0.146 4.146 11 C -0.096 4.096 12 N -0.250 5.250 13 C -0.051 4.051 14 C -0.035 4.035 15 C -0.572 4.572 16 H 0.051 0.949 17 C -0.189 4.189 18 N -0.591 5.591 19 Si 0.773 3.227 20 H -0.189 1.189 21 H -0.210 1.210 22 H -0.174 1.174 23 H 0.099 0.901 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.107 -6.551 -20.970 22.188 hybrid contribution 0.392 0.320 0.512 0.720 sum -2.715 -6.231 -20.458 21.557 Atomic orbital electron populations 1.22875 0.93908 1.04608 1.03629 1.22298 0.96966 0.96576 0.88111 0.91344 1.23451 0.94381 1.00825 0.97079 0.83774 1.20393 0.84435 0.75651 0.78322 1.93095 1.76977 1.73052 1.72972 1.93051 1.77133 1.56523 1.89477 1.93178 1.87358 1.78993 1.56928 1.22581 1.00545 0.96347 0.95094 1.23303 0.91444 0.98941 0.95871 1.64775 1.27692 1.26790 1.05782 1.21963 0.98619 0.93576 0.90920 1.19365 0.96285 0.95467 0.92367 1.21424 1.47367 0.93760 0.94602 0.94921 1.25954 0.94067 1.03219 0.95685 1.70062 1.49717 1.37093 1.02270 0.85656 0.79730 0.79688 0.77579 1.18881 1.21016 1.17353 0.90141 0.93264 0.88965 0.89988 0.86792 0.90001 0.92779 0.95377 0.92447 0.96404 0.96260 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.96 8.20 71.98 0.59 -4.37 16 2 C 0.07 1.75 3.00 45.06 0.14 1.88 16 3 H 0.07 1.70 7.77 -2.39 -0.02 1.68 16 4 C -0.14 -2.61 3.01 -9.92 -0.03 -2.64 16 5 H 0.14 1.95 8.14 -2.39 -0.02 1.94 16 6 C 0.47 9.38 2.32 71.98 0.17 9.55 16 7 F -0.18 -4.28 13.39 44.97 0.60 -3.67 16 8 F -0.18 -3.69 14.32 44.97 0.64 -3.05 16 9 F -0.18 -3.55 17.12 44.97 0.77 -2.78 16 10 C -0.11 -2.04 6.34 31.80 0.20 -1.84 16 11 C 0.03 0.83 5.91 86.65 0.51 1.34 16 12 N -0.53 -16.66 4.88 -858.08 -4.18 -20.84 16 13 C 0.08 3.03 4.64 86.30 0.40 3.43 16 14 C 0.00 0.14 4.13 29.85 0.12 0.26 16 15 C -0.53 -30.92 9.66 25.60 0.25 -30.68 16 16 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 17 C 0.01 0.45 5.47 84.66 0.46 0.92 16 18 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 19 Si 0.95 44.74 27.47 68.60 1.88 46.63 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 23 H 0.08 2.20 5.49 -2.39 -0.01 2.19 16 24 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.09 2.06 5.26 -2.38 -0.01 2.04 16 26 H 0.08 1.63 7.33 -2.39 -0.02 1.62 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 2.27 7.80 -2.39 -0.02 2.25 16 29 H 0.05 1.37 7.81 -2.39 -0.02 1.36 16 30 H 0.03 1.10 7.83 -2.39 -0.02 1.08 16 31 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 32 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 33 H 0.02 0.87 6.80 -2.39 -0.02 0.86 16 34 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -65.43 276.68 3.87 -61.56 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.04 Total: 3.90 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 2.81 Total: -22.13 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -3.88 Total: -80.46 kcal Atomic # 9 Polarization: -11.52 SS G_CDS: 2.02 Total: -9.50 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Total: -65.43 3.87 -61.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348243452.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.415 kcal (2) G-P(sol) polarization free energy of solvation -65.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds