Wall clock time and date at job start Mon Mar 30 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99819 * 2 1 4 4 H 1.09000 * 109.46885 * 329.99318 * 3 2 1 5 5 C 1.52997 * 109.47490 * 89.99420 * 3 2 1 6 6 C 1.53005 * 109.47010 * 209.99565 * 3 2 1 7 7 N 1.46505 * 109.47005 * 64.99964 * 6 3 2 8 8 C 1.39663 * 119.99935 * 180.02562 * 7 6 3 9 9 C 1.39007 * 120.04442 * 0.02562 * 8 7 6 10 10 C 1.38143 * 120.06592 * 179.97438 * 9 8 7 11 11 C 1.38174 * 120.14227 * 359.72767 * 10 9 8 12 12 C 1.38912 * 120.07871 * 0.55434 * 11 10 9 13 13 O 1.35751 * 120.03093 * 179.72008 * 12 11 10 14 14 C 1.34833 * 117.00044 * 174.18559 * 13 12 11 15 15 H 1.08001 * 119.99756 * 5.05336 * 14 13 12 16 16 C 1.38647 * 120.00273 * 185.05790 * 14 13 12 17 17 N 1.31562 * 119.99649 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47205 * 59.99691 * 18 16 14 20 20 H 1.48503 * 109.46997 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99529 * 18 16 14 22 22 C 1.38756 * 120.04075 * 179.97438 * 8 7 6 23 23 H 1.08997 * 109.47377 * 300.00407 * 1 2 3 24 24 H 1.09000 * 109.46699 * 60.01085 * 1 2 3 25 25 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47364 * 299.99806 * 5 3 2 27 27 H 1.09000 * 109.47139 * 60.00054 * 5 3 2 28 28 H 1.09007 * 109.47290 * 179.97438 * 5 3 2 29 29 H 1.08992 * 109.47363 * 305.00077 * 6 3 2 30 30 H 1.08995 * 109.46958 * 184.99407 * 6 3 2 31 31 H 0.97000 * 120.00088 * 359.97438 * 7 6 3 32 32 H 1.08000 * 119.96090 * 0.02562 * 9 8 7 33 33 H 1.07999 * 119.92920 * 180.02562 * 10 9 8 34 34 H 1.08003 * 119.96054 * 180.29241 * 11 10 9 35 35 H 0.96998 * 119.99725 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.07056 * 0.04191 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2175 1.7715 1.4424 6 6 3.3590 1.2632 -0.7212 7 7 3.1478 0.9330 -2.1328 8 6 4.2397 0.8360 -2.9982 9 6 5.5273 1.0522 -2.5210 10 6 6.6077 0.9559 -3.3765 11 6 6.4129 0.6391 -4.7072 12 6 5.1283 0.4276 -5.1918 13 8 4.9376 0.1220 -6.5006 14 6 3.6817 -0.1889 -6.8799 15 1 2.8687 -0.1081 -6.1736 16 6 3.4338 -0.6125 -8.1766 17 7 4.4242 -0.7105 -9.0371 18 14 1.6939 -1.0439 -8.7019 19 1 0.8187 0.1448 -8.5393 20 1 1.6968 -1.4648 -10.1260 21 1 1.1830 -2.1540 -7.8582 22 6 4.0407 0.5227 -4.3352 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.2567 1.8016 1.9562 27 1 2.8828 1.0777 1.9564 28 1 2.6613 2.7671 1.4424 29 1 3.9931 0.5052 -0.2617 30 1 3.8426 2.2370 -0.6444 31 1 2.2497 0.7809 -2.4662 32 1 5.6831 1.2948 -1.4802 33 1 7.6071 1.1239 -3.0033 34 1 7.2601 0.5599 -5.3724 35 1 4.2508 -1.0065 -9.9444 36 1 3.0415 0.3541 -4.7086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395164332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:27 Heat of formation + Delta-G solvation = -48.961156 kcal Electronic energy + Delta-G solvation = -17911.938464 eV Core-core repulsion = 14975.960767 eV Total energy + Delta-G solvation = -2935.977697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -39.15258 -38.51488 -36.79920 -34.59021 -32.24055 -31.89352 -29.18229 -28.21370 -26.90678 -25.33527 -25.10394 -22.07826 -21.25283 -20.43048 -17.83875 -17.32598 -16.97870 -16.03206 -15.42822 -15.07178 -14.82822 -14.35773 -14.13245 -13.86169 -13.59691 -13.31569 -12.94897 -12.85394 -12.72807 -12.39217 -12.08859 -11.60035 -11.58214 -11.38045 -10.97677 -10.81709 -10.73699 -10.53988 -10.35147 -9.86157 -9.34996 -9.31329 -8.70516 -7.28416 -6.70073 -6.35977 -3.95109 2.44788 2.64022 3.16975 3.19173 3.21132 3.54569 3.80337 4.03923 4.62493 4.76883 4.86301 4.93925 5.09510 5.18571 5.20379 5.36980 5.42845 5.48084 5.49462 5.65098 5.73685 5.80038 5.89761 6.05367 6.34038 6.42722 6.70271 6.72006 6.99337 7.10757 7.20873 7.45136 7.55240 7.73478 8.08962 8.10657 8.27600 9.10164 9.83414 10.82489 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.005373 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.343703 B = 5209.626435 C = 6497.439885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.073 3.927 4 H 0.065 0.935 5 C -0.171 4.171 6 C 0.136 3.864 7 N -0.750 5.750 8 C 0.250 3.750 9 C -0.280 4.280 10 C -0.040 4.040 11 C -0.237 4.237 12 C 0.189 3.811 13 O -0.179 6.179 14 C -0.388 4.388 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.866 5.866 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.302 4.302 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.395 0.605 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.269 0.731 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 4.206 17.226 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C 0.015 3.985 4 H 0.083 0.917 5 C -0.229 4.229 6 C 0.010 3.990 7 N -0.382 5.382 8 C 0.149 3.851 9 C -0.303 4.303 10 C -0.059 4.059 11 C -0.258 4.258 12 C 0.135 3.865 13 O -0.082 6.082 14 C -0.465 4.465 15 H 0.107 0.893 16 C -0.165 4.165 17 N -0.501 5.501 18 Si 0.764 3.236 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.326 4.326 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.854 4.006 16.959 18.383 hybrid contribution -1.546 -0.058 -0.289 1.574 sum -7.401 3.949 16.670 18.662 Atomic orbital electron populations 1.22797 0.81254 1.02837 0.99780 1.88005 1.19454 1.27281 1.95021 1.22394 0.95083 0.85161 0.95876 0.91692 1.22204 1.02573 1.01940 0.96209 1.21300 0.95081 1.00511 0.82066 1.44399 1.07023 1.79888 1.06905 1.17468 0.86951 0.91899 0.88829 1.20066 0.91252 1.19749 0.99220 1.20368 0.97183 0.95890 0.92450 1.20033 0.94734 1.15170 0.95844 1.19065 0.92691 0.90258 0.84489 1.83985 1.31312 1.74338 1.18601 1.21247 0.82655 1.45677 0.96917 0.89289 1.25256 0.99637 0.96680 0.94975 1.70035 1.31267 1.43846 1.04966 0.85816 0.80645 0.79083 0.78050 1.19661 1.20330 1.19605 1.20493 0.99753 1.19871 0.92450 0.94288 0.93941 0.89603 0.92232 0.91405 0.91254 0.91837 0.91412 0.77168 0.87905 0.87220 0.86939 0.92119 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.56 10.29 -35.23 -0.36 -4.93 16 3 C 0.07 0.76 2.75 -26.73 -0.07 0.68 16 4 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16 5 C -0.17 -1.38 9.53 37.16 0.35 -1.03 16 6 C 0.14 1.70 4.58 -4.04 -0.02 1.68 16 7 N -0.75 -11.94 5.68 -58.65 -0.33 -12.28 16 8 C 0.25 4.91 6.65 -83.81 -0.56 4.35 16 9 C -0.28 -5.19 9.31 -39.33 -0.37 -5.56 16 10 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 11 C -0.24 -5.32 9.99 -39.36 -0.39 -5.72 16 12 C 0.19 4.82 6.64 -39.14 -0.26 4.56 16 13 O -0.18 -5.31 9.76 0.04 0.00 -5.31 16 14 C -0.39 -11.20 9.49 30.88 0.29 -10.91 16 15 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.87 -25.99 13.67 55.48 0.76 -25.23 16 18 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.30 -6.93 9.01 -39.20 -0.35 -7.28 16 23 H 0.04 0.28 7.87 -51.93 -0.41 -0.12 16 24 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.84 7.94 -51.93 -0.41 0.43 16 30 H 0.07 0.78 7.95 -51.93 -0.41 0.37 16 31 H 0.39 6.02 8.48 -40.82 -0.35 5.67 16 32 H 0.10 1.63 6.73 -52.49 -0.35 1.28 16 33 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.11 2.44 8.06 -52.48 -0.42 2.02 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.12 2.84 5.64 -52.49 -0.30 2.54 16 LS Contribution 306.97 15.07 4.63 4.63 Total: -1.00 -32.35 306.97 -6.09 -38.45 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.98 Total: 6.72 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -0.78 Total: -18.04 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.43 Total: -37.51 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.36 Total: -10.23 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.35 -6.09 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395164332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.514 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds