Wall clock time and date at job start Mon Mar 30 2020 07:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99819 * 2 1 4 4 H 1.09000 * 109.46885 * 329.99318 * 3 2 1 5 5 C 1.52997 * 109.47490 * 89.99420 * 3 2 1 6 6 C 1.53005 * 109.47010 * 209.99565 * 3 2 1 7 7 N 1.46505 * 109.47005 * 64.99964 * 6 3 2 8 8 C 1.39663 * 119.99935 * 180.02562 * 7 6 3 9 9 C 1.39007 * 120.04442 * 0.02562 * 8 7 6 10 10 C 1.38143 * 120.06592 * 179.97438 * 9 8 7 11 11 C 1.38174 * 120.14227 * 359.72767 * 10 9 8 12 12 C 1.38912 * 120.07871 * 0.55434 * 11 10 9 13 13 O 1.35751 * 120.03093 * 179.72008 * 12 11 10 14 14 C 1.34833 * 117.00044 * 174.18559 * 13 12 11 15 15 H 1.08001 * 119.99756 * 5.05336 * 14 13 12 16 16 C 1.38647 * 120.00273 * 185.05790 * 14 13 12 17 17 N 1.31562 * 119.99649 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47205 * 59.99691 * 18 16 14 20 20 H 1.48503 * 109.46997 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99529 * 18 16 14 22 22 C 1.38756 * 120.04075 * 179.97438 * 8 7 6 23 23 H 1.08997 * 109.47377 * 300.00407 * 1 2 3 24 24 H 1.09000 * 109.46699 * 60.01085 * 1 2 3 25 25 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47364 * 299.99806 * 5 3 2 27 27 H 1.09000 * 109.47139 * 60.00054 * 5 3 2 28 28 H 1.09007 * 109.47290 * 179.97438 * 5 3 2 29 29 H 1.08992 * 109.47363 * 305.00077 * 6 3 2 30 30 H 1.08995 * 109.46958 * 184.99407 * 6 3 2 31 31 H 0.97000 * 120.00088 * 359.97438 * 7 6 3 32 32 H 1.08000 * 119.96090 * 0.02562 * 9 8 7 33 33 H 1.07999 * 119.92920 * 180.02562 * 10 9 8 34 34 H 1.08003 * 119.96054 * 180.29241 * 11 10 9 35 35 H 0.96998 * 119.99725 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.07056 * 0.04191 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2175 1.7715 1.4424 6 6 3.3590 1.2632 -0.7212 7 7 3.1478 0.9330 -2.1328 8 6 4.2397 0.8360 -2.9982 9 6 5.5273 1.0522 -2.5210 10 6 6.6077 0.9559 -3.3765 11 6 6.4129 0.6391 -4.7072 12 6 5.1283 0.4276 -5.1918 13 8 4.9376 0.1220 -6.5006 14 6 3.6817 -0.1889 -6.8799 15 1 2.8687 -0.1081 -6.1736 16 6 3.4338 -0.6125 -8.1766 17 7 4.4242 -0.7105 -9.0371 18 14 1.6939 -1.0439 -8.7019 19 1 0.8187 0.1448 -8.5393 20 1 1.6968 -1.4648 -10.1260 21 1 1.1830 -2.1540 -7.8582 22 6 4.0407 0.5227 -4.3352 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.2567 1.8016 1.9562 27 1 2.8828 1.0777 1.9564 28 1 2.6613 2.7671 1.4424 29 1 3.9931 0.5052 -0.2617 30 1 3.8426 2.2370 -0.6444 31 1 2.2497 0.7809 -2.4662 32 1 5.6831 1.2948 -1.4802 33 1 7.6071 1.1239 -3.0033 34 1 7.2601 0.5599 -5.3724 35 1 4.2508 -1.0065 -9.9444 36 1 3.0415 0.3541 -4.7086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395164332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:26 Heat of formation + Delta-G solvation = -71.509437 kcal Electronic energy + Delta-G solvation = -17912.916231 eV Core-core repulsion = 14975.960767 eV Total energy + Delta-G solvation = -2936.955464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78163 -39.59526 -38.43407 -35.96916 -34.21473 -32.97658 -30.75357 -29.76492 -27.66431 -27.24413 -26.31562 -23.54273 -22.49691 -21.95368 -19.74700 -18.99756 -17.83025 -17.38788 -16.74634 -16.52150 -16.09066 -15.87469 -15.65083 -15.51560 -15.01813 -14.67425 -14.44120 -14.10502 -13.75865 -13.48319 -13.38984 -12.97954 -12.96387 -12.55715 -12.46422 -12.34673 -12.18575 -12.03402 -11.68202 -11.29784 -10.95011 -10.63317 -10.59052 -9.09535 -8.44566 -8.22453 -6.13093 0.77397 0.93135 1.33829 1.45894 1.50681 2.19176 2.53392 2.79677 2.90257 3.27823 3.60615 3.80498 4.07494 4.17217 4.25252 4.41804 4.45889 4.53268 4.61873 4.64509 4.70228 4.76176 4.79749 4.88340 4.97543 5.06875 5.14147 5.16761 5.29366 5.47320 5.76212 5.81385 6.04490 6.12322 6.24788 6.60381 6.84068 7.00476 7.83798 8.78912 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.005373 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.343703 B = 5209.626435 C = 6497.439885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.074 3.926 4 H 0.073 0.927 5 C -0.166 4.166 6 C 0.129 3.871 7 N -0.743 5.743 8 C 0.254 3.746 9 C -0.265 4.265 10 C -0.025 4.025 11 C -0.262 4.262 12 C 0.152 3.848 13 O -0.232 6.232 14 C -0.412 4.412 15 H 0.097 0.903 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.018 2.982 19 H -0.257 1.257 20 H -0.270 1.270 21 H -0.259 1.259 22 C -0.318 4.318 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.397 0.603 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.107 0.893 35 H 0.272 0.728 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 5.043 20.361 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.016 3.984 4 H 0.091 0.909 5 C -0.223 4.223 6 C 0.005 3.995 7 N -0.372 5.372 8 C 0.150 3.850 9 C -0.287 4.287 10 C -0.044 4.044 11 C -0.283 4.283 12 C 0.101 3.899 13 O -0.139 6.139 14 C -0.488 4.488 15 H 0.115 0.885 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.184 1.184 22 C -0.342 4.342 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.231 0.769 32 H 0.161 0.839 33 H 0.172 0.828 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.004 4.866 20.182 21.910 hybrid contribution -1.118 -0.233 -0.925 1.469 sum -8.122 4.634 19.257 21.408 Atomic orbital electron populations 1.22938 0.79886 1.03510 1.00771 1.87960 1.21080 1.28359 1.95261 1.22440 0.93911 0.84874 0.97154 0.90942 1.22167 1.03257 1.02545 0.94376 1.21597 0.96865 1.01221 0.79781 1.44581 1.06195 1.78461 1.07997 1.17586 0.88794 0.90602 0.88027 1.20565 0.90255 1.16983 1.00943 1.20838 0.99609 0.93281 0.90641 1.20274 0.93558 1.16773 0.97690 1.19644 0.94733 0.91655 0.83898 1.83945 1.31845 1.77000 1.21078 1.21742 0.83081 1.46251 0.97767 0.88522 1.26583 1.04793 0.96155 0.94530 1.70187 1.34166 1.46108 1.05570 0.84664 0.74374 0.79383 0.77851 1.18150 1.19421 1.18373 1.20502 0.98593 1.21071 0.93987 0.92492 0.93716 0.89234 0.91248 0.91723 0.89701 0.92047 0.89510 0.76933 0.83931 0.82850 0.87475 0.91873 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 113.37 1.23 1.62 16 2 O -0.41 -8.85 10.29 -148.98 -1.53 -10.38 16 3 C 0.07 1.30 2.75 30.59 0.08 1.39 16 4 H 0.07 1.16 7.79 -2.39 -0.02 1.15 16 5 C -0.17 -2.06 9.53 71.98 0.69 -1.38 16 6 C 0.13 2.78 4.58 86.38 0.40 3.17 16 7 N -0.74 -21.91 5.68 -339.47 -1.93 -23.83 16 8 C 0.25 9.55 6.65 38.20 0.25 9.80 16 9 C -0.26 -8.88 9.31 22.43 0.21 -8.67 16 10 C -0.03 -0.89 10.03 22.23 0.22 -0.67 16 11 C -0.26 -11.94 9.99 22.42 0.22 -11.71 16 12 C 0.15 8.06 6.64 22.56 0.15 8.21 16 13 O -0.23 -14.68 9.76 -22.78 -0.22 -14.90 16 14 C -0.41 -25.03 9.49 67.92 0.64 -24.39 16 15 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 16 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 17 N -0.92 -58.15 13.67 21.61 0.30 -57.86 16 18 Si 1.02 44.11 29.55 68.60 2.03 46.14 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 C -0.32 -14.87 9.01 22.52 0.20 -14.67 16 23 H 0.06 0.67 7.87 -2.39 -0.02 0.65 16 24 H 0.04 0.66 8.08 -2.39 -0.02 0.65 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 0.75 7.87 -2.39 -0.02 0.73 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 1.39 7.94 -2.39 -0.02 1.38 16 30 H 0.09 1.59 7.95 -2.39 -0.02 1.57 16 31 H 0.40 11.48 8.48 -92.71 -0.79 10.69 16 32 H 0.14 3.71 6.73 -2.91 -0.02 3.69 16 33 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.11 5.33 5.64 -2.91 -0.02 5.31 16 Total: -1.00 -74.81 306.97 3.70 -71.11 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.29 Total: 27.93 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 4.76 Total: -38.21 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.63 Total: -81.69 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.76 Total: -25.28 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -74.81 3.70 -71.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395164332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.398 kcal (2) G-P(sol) polarization free energy of solvation -74.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds