Wall clock time and date at job start Mon Mar 30 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99754 * 2 1 4 4 H 1.48498 * 109.47249 * 270.00174 * 3 2 1 5 5 H 1.48501 * 109.47308 * 150.00265 * 3 2 1 6 6 H 1.48500 * 109.47090 * 30.00040 * 3 2 1 7 7 C 1.37879 * 120.00635 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99570 * 359.97438 * 7 2 1 10 10 H 1.09008 * 110.64238 * 61.69865 * 9 7 2 11 11 C 1.54591 * 110.72142 * 298.54565 * 9 7 2 12 12 C 1.53994 * 105.13863 * 219.68333 * 11 9 7 13 13 N 1.47910 * 107.05743 * 358.77861 * 12 11 9 14 14 C 1.46892 * 110.99736 * 145.84295 * 13 12 11 15 15 C 1.53002 * 109.46918 * 184.29082 * 14 13 12 16 16 C 1.53000 * 109.47454 * 185.14151 * 15 14 13 17 17 C 1.53002 * 109.47454 * 180.02562 * 16 15 14 18 18 F 1.39894 * 109.46945 * 59.99802 * 17 16 15 19 19 F 1.39898 * 109.47134 * 180.02562 * 17 16 15 20 20 F 1.39897 * 109.46851 * 299.99885 * 17 16 15 21 21 C 1.48536 * 105.81888 * 25.32862 * 13 12 11 22 22 H 0.97005 * 119.99418 * 179.97438 * 1 2 3 23 23 H 1.09000 * 110.31223 * 338.60183 * 11 9 7 24 24 H 1.09003 * 110.30922 * 100.77137 * 11 9 7 25 25 H 1.09000 * 109.92031 * 118.12898 * 12 11 9 26 26 H 1.09005 * 109.92077 * 239.42998 * 12 11 9 27 27 H 1.08999 * 109.47618 * 304.28427 * 14 13 12 28 28 H 1.08997 * 109.47701 * 64.29346 * 14 13 12 29 29 H 1.08999 * 109.46886 * 305.14140 * 15 14 13 30 30 H 1.09003 * 109.47164 * 65.13913 * 15 14 13 31 31 H 1.08999 * 109.47065 * 299.99879 * 16 15 14 32 32 H 1.09003 * 109.47129 * 59.99740 * 16 15 14 33 33 H 1.08994 * 110.66401 * 202.35825 * 21 13 12 34 34 H 1.08997 * 110.66651 * 79.23125 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 3.5466 1.4403 0.7000 6 1 1.4464 2.6527 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6398 -2.5900 -0.8985 11 6 0.3798 -2.6277 1.2699 12 6 0.5078 -4.1014 1.6980 13 7 1.3773 -4.7679 0.7043 14 6 2.1995 -5.8075 1.3375 15 6 3.1591 -6.3992 0.3031 16 6 3.9248 -7.5675 0.9273 17 6 4.8849 -8.1587 -0.1069 18 9 5.7901 -7.1749 -0.5190 19 9 5.5847 -9.2274 0.4637 20 9 4.1574 -8.6150 -1.2113 21 6 2.2273 -3.6956 0.1262 22 1 -0.4849 -0.8401 -0.0004 23 1 0.7561 -1.9717 2.0548 24 1 -0.6591 -2.3889 1.0419 25 1 0.9604 -4.1627 2.6877 26 1 -0.4752 -4.5724 1.7064 27 1 2.7718 -5.3702 2.1555 28 1 1.5537 -6.5949 1.7261 29 1 2.5919 -6.7547 -0.5571 30 1 3.8644 -5.6328 -0.0184 31 1 4.4921 -7.2119 1.7875 32 1 3.2195 -8.3339 1.2487 33 1 2.6045 -3.9898 -0.8532 34 1 3.0495 -3.4518 0.7989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397653472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:41 Heat of formation + Delta-G solvation = -174.324894 kcal Electronic energy + Delta-G solvation = -18724.731905 eV Core-core repulsion = 15241.461288 eV Total energy + Delta-G solvation = -3483.270617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.21473 -47.73140 -47.67277 -38.47317 -35.12564 -33.08083 -30.30875 -28.39468 -26.90093 -24.37018 -23.19313 -21.67946 -20.12967 -19.60867 -18.66803 -18.38739 -17.53236 -16.82276 -15.67194 -15.06235 -14.62043 -14.53183 -14.37813 -14.11806 -13.86428 -13.84567 -13.77756 -13.46366 -13.11415 -12.61885 -12.21126 -12.17514 -11.86136 -11.56081 -11.16556 -10.93533 -10.72458 -10.55370 -10.46402 -10.11373 -9.81874 -9.44631 -8.50561 -8.35535 -7.92756 -6.34148 -4.06998 2.64542 3.43099 3.45763 3.61522 3.65768 3.85821 3.91906 4.45118 4.55480 4.77912 4.98859 5.07958 5.26675 5.37376 5.38964 5.60413 5.65952 5.85985 5.94208 6.03776 6.14188 6.26664 6.35902 6.64863 6.88165 6.90631 7.23092 7.39649 7.54864 7.69115 8.24471 8.42803 8.88428 9.65643 11.04343 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.033682 B = 0.004467 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.116428 B = 6266.922299 C = 6790.944577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.597 4.597 8 H 0.049 0.951 9 C 0.035 3.965 10 H 0.028 0.972 11 C -0.121 4.121 12 C 0.038 3.962 13 N -0.524 5.524 14 C 0.053 3.947 15 C -0.124 4.124 16 C -0.163 4.163 17 C 0.452 3.548 18 F -0.183 7.183 19 F -0.189 7.189 20 F -0.183 7.183 21 C 0.047 3.953 22 H 0.273 0.727 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 -15.469 3.193 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.184 4.184 3 Si 0.898 3.102 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.635 4.635 8 H 0.067 0.933 9 C 0.016 3.984 10 H 0.046 0.954 11 C -0.160 4.160 12 C -0.089 4.089 13 N -0.248 5.248 14 C -0.076 4.076 15 C -0.161 4.161 16 C -0.202 4.202 17 C 0.398 3.602 18 F -0.164 7.164 19 F -0.171 7.171 20 F -0.165 7.165 21 C -0.079 4.079 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.526 -14.103 2.779 15.787 hybrid contribution 0.901 -1.490 0.543 1.824 sum 7.427 -15.593 3.322 17.588 Atomic orbital electron populations 1.70756 1.06852 1.31171 1.46104 1.25763 0.96547 1.02458 0.93596 0.83539 0.74650 0.75243 0.76786 1.21440 1.21595 1.21049 1.21958 0.94023 0.91331 1.56233 0.93280 1.19707 0.92753 0.92737 0.93168 0.95395 1.22629 1.00608 0.92103 1.00647 1.22880 0.96674 0.96457 0.92930 1.64802 1.19057 1.11558 1.29355 1.22129 0.94733 0.95875 0.94873 1.21627 0.98634 0.96025 0.99846 1.22867 0.98596 1.01420 0.97330 1.20648 0.81012 0.76064 0.82507 1.93195 1.69683 1.62046 1.91497 1.93174 1.80986 1.58332 1.84592 1.93186 1.77236 1.89539 1.56522 1.23270 0.95587 0.91171 0.97922 0.91482 0.92087 0.92696 0.95043 0.91748 0.94905 0.91167 0.89672 0.90317 0.87450 0.87300 0.91688 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.06 13.42 55.43 0.74 -26.31 16 2 C 0.02 0.59 5.33 -17.82 -0.10 0.50 16 3 Si 1.07 24.94 29.90 -169.99 -5.08 19.86 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.60 -16.51 8.42 -34.44 -0.29 -16.80 16 8 H 0.05 1.35 7.78 -52.49 -0.41 0.95 16 9 C 0.04 0.88 2.62 -89.91 -0.24 0.65 16 10 H 0.03 0.76 8.08 -51.92 -0.42 0.34 16 11 C -0.12 -2.76 5.34 -25.38 -0.14 -2.89 16 12 C 0.04 0.71 6.70 -2.75 -0.02 0.70 16 13 N -0.52 -9.49 5.35 -230.45 -1.23 -10.72 16 14 C 0.05 0.73 4.84 -3.83 -0.02 0.71 16 15 C -0.12 -1.50 4.65 -26.73 -0.12 -1.63 16 16 C -0.16 -1.49 5.26 -26.73 -0.14 -1.63 16 17 C 0.45 4.83 3.16 37.16 0.12 4.95 16 18 F -0.18 -2.24 16.80 2.25 0.04 -2.21 16 19 F -0.19 -2.03 17.32 2.25 0.04 -1.99 16 20 F -0.18 -2.17 16.80 2.25 0.04 -2.13 16 21 C 0.05 0.99 4.78 -1.90 -0.01 0.98 16 22 H 0.27 8.01 5.53 -40.82 -0.23 7.78 16 23 H 0.06 1.49 7.84 -51.93 -0.41 1.08 16 24 H 0.05 1.28 6.97 -51.93 -0.36 0.92 16 25 H 0.03 0.54 7.67 -51.93 -0.40 0.14 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.09 7.80 -51.93 -0.41 0.68 16 30 H 0.08 1.06 6.84 -51.93 -0.36 0.70 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.31 7.77 -51.93 -0.40 0.91 16 34 H 0.04 0.78 7.92 -51.93 -0.41 0.37 16 LS Contribution 286.74 15.07 4.32 4.32 Total: -1.00 -29.44 286.74 -6.78 -36.23 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.70 Total: -2.58 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.95 Total: -14.47 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.49 Total: -37.03 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.44 -6.78 -36.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397653472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.098 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds