Wall clock time and date at job start Mon Mar 30 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99754 * 2 1 4 4 H 1.48498 * 109.47249 * 270.00174 * 3 2 1 5 5 H 1.48501 * 109.47308 * 150.00265 * 3 2 1 6 6 H 1.48500 * 109.47090 * 30.00040 * 3 2 1 7 7 C 1.37879 * 120.00635 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99570 * 359.97438 * 7 2 1 10 10 H 1.09008 * 110.64238 * 61.69865 * 9 7 2 11 11 C 1.54591 * 110.72142 * 298.54565 * 9 7 2 12 12 C 1.53994 * 105.13863 * 219.68333 * 11 9 7 13 13 N 1.47910 * 107.05743 * 358.77861 * 12 11 9 14 14 C 1.46892 * 110.99736 * 145.84295 * 13 12 11 15 15 C 1.53002 * 109.46918 * 184.29082 * 14 13 12 16 16 C 1.53000 * 109.47454 * 185.14151 * 15 14 13 17 17 C 1.53002 * 109.47454 * 180.02562 * 16 15 14 18 18 F 1.39894 * 109.46945 * 59.99802 * 17 16 15 19 19 F 1.39898 * 109.47134 * 180.02562 * 17 16 15 20 20 F 1.39897 * 109.46851 * 299.99885 * 17 16 15 21 21 C 1.48536 * 105.81888 * 25.32862 * 13 12 11 22 22 H 0.97005 * 119.99418 * 179.97438 * 1 2 3 23 23 H 1.09000 * 110.31223 * 338.60183 * 11 9 7 24 24 H 1.09003 * 110.30922 * 100.77137 * 11 9 7 25 25 H 1.09000 * 109.92031 * 118.12898 * 12 11 9 26 26 H 1.09005 * 109.92077 * 239.42998 * 12 11 9 27 27 H 1.08999 * 109.47618 * 304.28427 * 14 13 12 28 28 H 1.08997 * 109.47701 * 64.29346 * 14 13 12 29 29 H 1.08999 * 109.46886 * 305.14140 * 15 14 13 30 30 H 1.09003 * 109.47164 * 65.13913 * 15 14 13 31 31 H 1.08999 * 109.47065 * 299.99879 * 16 15 14 32 32 H 1.09003 * 109.47129 * 59.99740 * 16 15 14 33 33 H 1.08994 * 110.66401 * 202.35825 * 21 13 12 34 34 H 1.08997 * 110.66651 * 79.23125 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 3.5466 1.4403 0.7000 6 1 1.4464 2.6527 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6398 -2.5900 -0.8985 11 6 0.3798 -2.6277 1.2699 12 6 0.5078 -4.1014 1.6980 13 7 1.3773 -4.7679 0.7043 14 6 2.1995 -5.8075 1.3375 15 6 3.1591 -6.3992 0.3031 16 6 3.9248 -7.5675 0.9273 17 6 4.8849 -8.1587 -0.1069 18 9 5.7901 -7.1749 -0.5190 19 9 5.5847 -9.2274 0.4637 20 9 4.1574 -8.6150 -1.2113 21 6 2.2273 -3.6956 0.1262 22 1 -0.4849 -0.8401 -0.0004 23 1 0.7561 -1.9717 2.0548 24 1 -0.6591 -2.3889 1.0419 25 1 0.9604 -4.1627 2.6877 26 1 -0.4752 -4.5724 1.7064 27 1 2.7718 -5.3702 2.1555 28 1 1.5537 -6.5949 1.7261 29 1 2.5919 -6.7547 -0.5571 30 1 3.8644 -5.6328 -0.0184 31 1 4.4921 -7.2119 1.7875 32 1 3.2195 -8.3339 1.2487 33 1 2.6045 -3.9898 -0.8532 34 1 3.0495 -3.4518 0.7989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397653472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:41 Heat of formation + Delta-G solvation = -192.267176 kcal Electronic energy + Delta-G solvation = -18725.509940 eV Core-core repulsion = 15241.461288 eV Total energy + Delta-G solvation = -3484.048653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.07646 -48.58341 -48.56499 -40.01943 -36.44232 -34.77735 -31.84177 -30.11223 -28.13922 -26.29848 -24.34780 -22.83326 -21.60074 -21.35386 -19.52913 -19.27431 -19.01612 -18.25708 -16.98011 -16.34548 -16.10135 -15.64485 -15.49231 -15.39976 -15.00924 -14.87058 -14.75478 -14.70880 -14.57435 -13.97848 -13.74463 -13.53378 -13.02132 -12.97644 -12.79595 -12.44317 -12.22593 -11.99734 -11.93567 -11.72997 -11.64959 -11.32765 -10.57481 -10.48621 -9.36859 -8.58286 -6.32066 1.53584 1.61689 1.79130 1.83024 2.57407 2.80170 2.98580 3.12114 3.20409 3.26579 3.86992 3.96667 3.99997 4.11049 4.27357 4.33062 4.43762 4.51224 4.55524 4.67724 4.74840 4.86770 4.99559 5.05228 5.15168 5.17369 5.36035 5.62020 5.79822 6.15014 6.19342 6.25100 6.67130 7.48971 8.80662 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.033682 B = 0.004467 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.116428 B = 6266.922299 C = 6790.944577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.028 4.028 3 Si 1.115 2.885 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.610 4.610 8 H 0.045 0.955 9 C 0.021 3.979 10 H -0.004 1.004 11 C -0.114 4.114 12 C 0.047 3.953 13 N -0.529 5.529 14 C 0.051 3.949 15 C -0.120 4.120 16 C -0.152 4.152 17 C 0.450 3.550 18 F -0.195 7.195 19 F -0.188 7.188 20 F -0.192 7.192 21 C 0.064 3.936 22 H 0.263 0.737 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.066 0.934 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.875 -16.709 4.305 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.227 4.227 3 Si 0.937 3.063 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.649 4.649 8 H 0.063 0.937 9 C 0.002 3.998 10 H 0.014 0.986 11 C -0.153 4.153 12 C -0.080 4.080 13 N -0.254 5.254 14 C -0.077 4.077 15 C -0.157 4.157 16 C -0.190 4.190 17 C 0.396 3.604 18 F -0.177 7.177 19 F -0.170 7.170 20 F -0.174 7.174 21 C -0.064 4.064 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.394 -15.377 3.892 17.501 hybrid contribution 0.633 -1.162 0.168 1.334 sum 8.028 -16.539 4.060 18.827 Atomic orbital electron populations 1.70865 1.07802 1.30674 1.48178 1.27165 0.96634 1.06145 0.92755 0.82956 0.74192 0.71568 0.77592 1.20140 1.19706 1.20935 1.22324 0.94093 0.92877 1.55559 0.93666 1.19712 0.93660 0.93698 0.92779 0.98613 1.22410 0.98909 0.95077 0.98864 1.22801 0.98164 0.93322 0.93739 1.64782 1.19341 1.11133 1.30112 1.22279 0.95117 0.95123 0.95160 1.21517 0.98128 0.96665 0.99438 1.22837 0.98560 1.00783 0.96829 1.20913 0.81028 0.75888 0.82557 1.93174 1.70243 1.62565 1.91699 1.93175 1.81033 1.58290 1.84478 1.93172 1.77363 1.89643 1.57181 1.22970 0.94632 0.90476 0.98320 0.92591 0.94315 0.94288 0.93067 0.89826 0.94194 0.88345 0.90481 0.92060 0.85587 0.84658 0.91597 0.94815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.93 13.42 21.45 0.29 -56.64 16 2 C -0.03 -1.61 5.33 84.66 0.45 -1.16 16 3 Si 1.11 50.16 29.90 68.60 2.05 52.21 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.61 -34.33 8.42 25.60 0.22 -34.12 16 8 H 0.05 2.51 7.78 -2.91 -0.02 2.49 16 9 C 0.02 1.05 2.62 -10.34 -0.03 1.02 16 10 H 0.00 -0.24 8.08 -2.38 -0.02 -0.26 16 11 C -0.11 -5.25 5.34 31.47 0.17 -5.09 16 12 C 0.05 1.68 6.70 86.44 0.58 2.26 16 13 N -0.53 -18.19 5.35 -883.02 -4.73 -22.92 16 14 C 0.05 1.24 4.84 86.31 0.42 1.66 16 15 C -0.12 -2.61 4.65 30.59 0.14 -2.47 16 16 C -0.15 -2.26 5.26 30.59 0.16 -2.10 16 17 C 0.45 8.70 3.16 71.98 0.23 8.92 16 18 F -0.20 -4.55 16.80 44.97 0.76 -3.79 16 19 F -0.19 -3.61 17.32 44.97 0.78 -2.84 16 20 F -0.19 -4.24 16.80 44.97 0.76 -3.49 16 21 C 0.06 2.62 4.78 86.65 0.41 3.03 16 22 H 0.26 16.03 5.53 -92.70 -0.51 15.52 16 23 H 0.04 1.91 7.84 -2.39 -0.02 1.89 16 24 H 0.04 1.87 6.97 -2.39 -0.02 1.85 16 25 H 0.05 1.62 7.67 -2.39 -0.02 1.60 16 26 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 27 H 0.04 0.95 7.97 -2.39 -0.02 0.93 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.82 7.80 -2.39 -0.02 1.80 16 30 H 0.06 1.56 6.84 -2.39 -0.02 1.54 16 31 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 2.66 7.77 -2.39 -0.02 2.64 16 34 H 0.03 1.40 7.92 -2.39 -0.02 1.38 16 Total: -1.00 -64.47 286.74 3.99 -60.48 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.34 Total: 5.02 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 2.75 Total: -28.04 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -4.44 Total: -79.56 kcal Atomic # 9 Polarization: -12.41 SS G_CDS: 2.29 Total: -10.12 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.21 kcal Total: -64.47 3.99 -60.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397653472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.790 kcal (2) G-P(sol) polarization free energy of solvation -64.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds