Wall clock time and date at job start Mon Mar 30 2020 07:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46860 * 2 1 4 4 C 1.46850 * 110.99765 * 291.77708 * 3 2 1 5 5 C 1.53042 * 109.52061 * 185.84166 * 4 3 2 6 6 C 1.53126 * 109.31111 * 300.83940 * 5 4 3 7 7 C 1.53120 * 109.15490 * 57.59460 * 6 5 4 8 8 H 1.09002 * 109.50553 * 62.36798 * 7 6 5 9 9 C 1.50700 * 109.49993 * 182.44532 * 7 6 5 10 10 H 1.07996 * 120.00321 * 119.92595 * 9 7 6 11 11 C 1.37878 * 119.99848 * 299.64716 * 9 7 6 12 12 N 1.31507 * 120.00487 * 0.27536 * 11 9 7 13 13 Si 1.86800 * 119.99894 * 180.27990 * 11 9 7 14 14 H 1.48500 * 109.47416 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47504 * 119.99705 * 13 11 9 16 16 H 1.48500 * 109.47071 * 240.00088 * 13 11 9 17 17 C 1.46846 * 111.00422 * 55.98523 * 3 2 1 18 18 H 1.08996 * 109.46404 * 294.17949 * 17 3 2 19 19 C 1.53006 * 109.45022 * 54.15139 * 17 3 2 20 20 F 1.39900 * 109.47184 * 174.10275 * 19 17 3 21 21 F 1.39904 * 109.46798 * 294.09885 * 19 17 3 22 22 F 1.39896 * 109.47026 * 54.09789 * 19 17 3 23 23 H 1.09006 * 109.46986 * 300.00193 * 1 2 3 24 24 H 1.08995 * 109.47595 * 60.00045 * 1 2 3 25 25 H 1.09003 * 109.47142 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46693 * 240.00344 * 2 1 3 27 27 H 1.08995 * 109.47595 * 119.99955 * 2 1 3 28 28 H 1.09000 * 109.46570 * 305.85614 * 4 3 2 29 29 H 1.08999 * 109.46537 * 65.82901 * 4 3 2 30 30 H 1.08999 * 109.50594 * 60.76062 * 5 4 3 31 31 H 1.09001 * 109.50195 * 180.84215 * 5 4 3 32 32 H 1.09004 * 109.49251 * 297.71542 * 6 5 4 33 33 H 1.08992 * 109.55743 * 177.51877 * 6 5 4 34 34 H 0.96999 * 120.00852 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7154 2.0507 -1.2731 5 6 2.3644 3.4365 -1.2935 6 6 1.8277 4.2642 -0.1223 7 6 2.1136 3.5252 1.1879 8 1 3.1907 3.4236 1.3209 9 6 1.5356 4.3041 2.3413 10 1 0.7863 3.8538 2.9754 11 6 1.9674 5.5896 2.5904 12 7 2.8798 6.1380 1.8183 13 14 1.2566 6.5522 4.0247 14 1 0.2538 5.7169 4.7331 15 1 2.3471 6.9197 4.9633 16 1 0.6032 7.7856 3.5178 17 6 1.4720 2.1369 1.1363 18 1 0.3934 2.2395 1.0180 19 6 1.7733 1.3874 2.4358 20 9 1.3720 2.1658 3.5268 21 9 1.0763 0.1744 2.4468 22 9 3.1469 1.1368 2.5218 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.1067 1.4543 -2.0974 29 1 0.6356 2.1537 -1.3802 30 1 3.4455 3.3336 -1.2003 31 1 2.1260 3.9362 -2.2324 32 1 0.7523 4.4009 -0.2362 33 1 2.3199 5.2366 -0.1069 34 1 3.1834 7.0425 1.9932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709973538.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:47 Heat of formation + Delta-G solvation = -146.392316 kcal Electronic energy + Delta-G solvation = -20790.016190 eV Core-core repulsion = 17307.956820 eV Total energy + Delta-G solvation = -3482.059370 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.35135 -46.90513 -46.61249 -38.73922 -34.32398 -32.24488 -30.83820 -28.95340 -25.98638 -24.69692 -23.43145 -21.45587 -20.93367 -18.87498 -17.64509 -17.39527 -16.84426 -16.14064 -15.18573 -14.77855 -14.30695 -14.14978 -13.68951 -13.53536 -13.14414 -13.12593 -12.96815 -12.82670 -12.60217 -12.55082 -12.05457 -11.96685 -11.44643 -11.29008 -10.96091 -10.89870 -10.69185 -10.34867 -10.18996 -9.83898 -9.67001 -9.29841 -8.72657 -8.36101 -7.90136 -6.01803 -4.06950 3.30396 3.38833 3.43763 3.59406 4.13899 4.45420 4.70776 4.96647 5.17899 5.27082 5.32663 5.42985 5.55307 5.67708 5.78883 5.89579 5.95569 6.01614 6.11465 6.27062 6.36240 6.42485 6.58417 6.70430 7.03178 7.18625 7.35354 7.50934 7.71543 7.85868 8.04378 8.30737 8.95381 9.58072 11.04924 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.010504 C = 0.008370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.095197 B = 2665.089144 C = 3344.562998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.028 3.972 3 N -0.528 5.528 4 C 0.065 3.935 5 C -0.122 4.122 6 C -0.107 4.107 7 C 0.059 3.941 8 H 0.046 0.954 9 C -0.528 4.528 10 H 0.075 0.925 11 C 0.067 3.933 12 N -0.888 5.888 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.052 3.948 18 H 0.072 0.928 19 C 0.459 3.541 20 F -0.161 7.161 21 F -0.202 7.202 22 F -0.180 7.180 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.140 -8.848 -4.266 10.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.100 4.100 3 N -0.252 5.252 4 C -0.062 4.062 5 C -0.160 4.160 6 C -0.145 4.145 7 C 0.040 3.960 8 H 0.064 0.936 9 C -0.567 4.567 10 H 0.093 0.907 11 C -0.135 4.135 12 N -0.527 5.527 13 Si 0.719 3.281 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.057 4.057 18 H 0.089 0.911 19 C 0.405 3.595 20 F -0.142 7.142 21 F -0.184 7.184 22 F -0.161 7.161 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.514 -8.713 -4.208 9.997 hybrid contribution -1.225 0.403 0.855 1.547 sum -3.739 -8.310 -3.354 9.710 Atomic orbital electron populations 1.22476 0.98254 1.02014 1.02154 1.22595 0.93274 0.90808 1.03330 1.62124 1.58895 1.01449 1.02720 1.22071 0.98062 0.96164 0.89937 1.21749 1.00948 0.93970 0.99341 1.21632 0.98884 1.01421 0.92589 1.18789 0.97199 0.85183 0.94800 0.93592 1.21617 1.23774 0.98890 1.12394 0.90668 1.24896 0.94822 0.97517 0.96277 1.69892 1.29876 1.14869 1.38039 0.86545 0.79100 0.79832 0.82650 1.19642 1.21015 1.21134 1.23042 1.00250 0.96991 0.85442 0.91076 1.20614 0.74179 0.76291 0.88421 1.93202 1.90222 1.73539 1.57230 1.93034 1.79740 1.48786 1.96850 1.93124 1.31821 1.94333 1.96840 0.91915 0.92873 0.92441 0.91033 0.89566 0.91511 0.95068 0.91720 0.92956 0.94681 0.88298 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 8.60 37.16 0.32 -2.33 16 2 C 0.03 0.42 5.45 -3.82 -0.02 0.40 16 3 N -0.53 -9.51 4.52 -226.69 -1.02 -10.54 16 4 C 0.06 1.07 5.10 -3.83 -0.02 1.05 16 5 C -0.12 -2.24 6.09 -26.64 -0.16 -2.40 16 6 C -0.11 -2.40 5.03 -26.60 -0.13 -2.53 16 7 C 0.06 1.42 1.71 -91.69 -0.16 1.26 16 8 H 0.05 1.25 7.94 -51.93 -0.41 0.84 16 9 C -0.53 -13.96 7.22 -34.44 -0.25 -14.21 16 10 H 0.08 1.99 5.58 -52.49 -0.29 1.69 16 11 C 0.07 1.80 5.31 -17.82 -0.09 1.70 16 12 N -0.89 -24.69 11.36 55.43 0.63 -24.06 16 13 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 17 C 0.05 1.07 1.07 -67.72 -0.07 1.00 16 18 H 0.07 1.45 6.59 -51.93 -0.34 1.11 16 19 C 0.46 9.47 2.42 37.16 0.09 9.56 16 20 F -0.16 -3.63 13.56 2.25 0.03 -3.60 16 21 F -0.20 -3.67 12.34 2.25 0.03 -3.64 16 22 F -0.18 -3.86 16.82 2.25 0.04 -3.83 16 23 H 0.06 0.97 5.22 -51.93 -0.27 0.70 16 24 H 0.05 0.71 6.75 -51.93 -0.35 0.36 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.95 8.02 -51.93 -0.42 0.54 16 27 H 0.09 1.38 5.69 -51.93 -0.30 1.08 16 28 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 29 H 0.03 0.50 6.82 -51.93 -0.35 0.15 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 2.49 6.17 -51.93 -0.32 2.17 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 265.15 15.07 4.00 4.00 Total: -1.00 -26.99 265.15 -6.12 -33.11 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.30 Total: -1.12 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.50 Total: -6.50 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: -0.39 Total: -34.59 kcal Atomic # 9 Polarization: -11.16 SS G_CDS: 0.10 Total: -11.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.99 -6.12 -33.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709973538.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.278 kcal (2) G-P(sol) polarization free energy of solvation -26.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds