Wall clock time and date at job start Mon Mar 30 2020 07:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46860 * 2 1 4 4 C 1.46850 * 110.99765 * 291.77708 * 3 2 1 5 5 C 1.53042 * 109.52061 * 185.84166 * 4 3 2 6 6 C 1.53126 * 109.31111 * 300.83940 * 5 4 3 7 7 C 1.53120 * 109.15490 * 57.59460 * 6 5 4 8 8 H 1.09002 * 109.50553 * 62.36798 * 7 6 5 9 9 C 1.50700 * 109.49993 * 182.44532 * 7 6 5 10 10 H 1.07996 * 120.00321 * 119.92595 * 9 7 6 11 11 C 1.37878 * 119.99848 * 299.64716 * 9 7 6 12 12 N 1.31507 * 120.00487 * 0.27536 * 11 9 7 13 13 Si 1.86800 * 119.99894 * 180.27990 * 11 9 7 14 14 H 1.48500 * 109.47416 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47504 * 119.99705 * 13 11 9 16 16 H 1.48500 * 109.47071 * 240.00088 * 13 11 9 17 17 C 1.46846 * 111.00422 * 55.98523 * 3 2 1 18 18 H 1.08996 * 109.46404 * 294.17949 * 17 3 2 19 19 C 1.53006 * 109.45022 * 54.15139 * 17 3 2 20 20 F 1.39900 * 109.47184 * 174.10275 * 19 17 3 21 21 F 1.39904 * 109.46798 * 294.09885 * 19 17 3 22 22 F 1.39896 * 109.47026 * 54.09789 * 19 17 3 23 23 H 1.09006 * 109.46986 * 300.00193 * 1 2 3 24 24 H 1.08995 * 109.47595 * 60.00045 * 1 2 3 25 25 H 1.09003 * 109.47142 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46693 * 240.00344 * 2 1 3 27 27 H 1.08995 * 109.47595 * 119.99955 * 2 1 3 28 28 H 1.09000 * 109.46570 * 305.85614 * 4 3 2 29 29 H 1.08999 * 109.46537 * 65.82901 * 4 3 2 30 30 H 1.08999 * 109.50594 * 60.76062 * 5 4 3 31 31 H 1.09001 * 109.50195 * 180.84215 * 5 4 3 32 32 H 1.09004 * 109.49251 * 297.71542 * 6 5 4 33 33 H 1.08992 * 109.55743 * 177.51877 * 6 5 4 34 34 H 0.96999 * 120.00852 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7154 2.0507 -1.2731 5 6 2.3644 3.4365 -1.2935 6 6 1.8277 4.2642 -0.1223 7 6 2.1136 3.5252 1.1879 8 1 3.1907 3.4236 1.3209 9 6 1.5356 4.3041 2.3413 10 1 0.7863 3.8538 2.9754 11 6 1.9674 5.5896 2.5904 12 7 2.8798 6.1380 1.8183 13 14 1.2566 6.5522 4.0247 14 1 0.2538 5.7169 4.7331 15 1 2.3471 6.9197 4.9633 16 1 0.6032 7.7856 3.5178 17 6 1.4720 2.1369 1.1363 18 1 0.3934 2.2395 1.0180 19 6 1.7733 1.3874 2.4358 20 9 1.3720 2.1658 3.5268 21 9 1.0763 0.1744 2.4468 22 9 3.1469 1.1368 2.5218 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.1067 1.4543 -2.0974 29 1 0.6356 2.1537 -1.3802 30 1 3.4455 3.3336 -1.2003 31 1 2.1260 3.9362 -2.2324 32 1 0.7523 4.4009 -0.2362 33 1 2.3199 5.2366 -0.1069 34 1 3.1834 7.0425 1.9932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709973538.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:47 Heat of formation + Delta-G solvation = -162.408951 kcal Electronic energy + Delta-G solvation = -20790.710723 eV Core-core repulsion = 17307.956820 eV Total energy + Delta-G solvation = -3482.753903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.00528 -48.53186 -48.33958 -40.23253 -36.01927 -33.95374 -32.52324 -30.35167 -27.76026 -26.33437 -24.94308 -23.09500 -22.45095 -20.47481 -19.28817 -19.05973 -18.67986 -17.90302 -16.83850 -16.19094 -16.02040 -15.67475 -15.25695 -15.03323 -14.83328 -14.71493 -14.63984 -14.53784 -14.34954 -14.13855 -13.50513 -13.35734 -12.97748 -12.78495 -12.65757 -12.58060 -12.48366 -11.89871 -11.71679 -11.56508 -11.42220 -10.99597 -10.63739 -10.38365 -9.28118 -8.07390 -6.18075 1.40084 1.43579 1.53994 1.95797 2.43603 2.72572 3.07049 3.22568 3.33070 3.62930 4.05334 4.16347 4.24558 4.29978 4.43626 4.54725 4.58070 4.62117 4.77983 4.97210 4.99419 5.04313 5.10659 5.32687 5.37868 5.44430 5.70295 5.85640 5.95043 6.08975 6.19124 6.34028 6.90336 7.49109 8.98185 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.010504 C = 0.008370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.095197 B = 2665.089144 C = 3344.562998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.027 3.973 3 N -0.541 5.541 4 C 0.068 3.932 5 C -0.116 4.116 6 C -0.102 4.102 7 C 0.060 3.940 8 H 0.005 0.995 9 C -0.539 4.539 10 H 0.073 0.927 11 C 0.019 3.981 12 N -0.914 5.914 13 Si 0.945 3.055 14 H -0.268 1.268 15 H -0.285 1.285 16 H -0.279 1.279 17 C 0.063 3.937 18 H 0.074 0.926 19 C 0.459 3.541 20 F -0.176 7.176 21 F -0.185 7.185 22 F -0.187 7.187 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.168 -10.133 -5.300 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.100 4.100 3 N -0.266 5.266 4 C -0.059 4.059 5 C -0.153 4.153 6 C -0.140 4.140 7 C 0.041 3.959 8 H 0.024 0.976 9 C -0.578 4.578 10 H 0.091 0.909 11 C -0.180 4.180 12 N -0.553 5.553 13 Si 0.771 3.229 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.205 1.205 17 C -0.047 4.047 18 H 0.092 0.908 19 C 0.405 3.595 20 F -0.157 7.157 21 F -0.166 7.166 22 F -0.169 7.169 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.551 -10.013 -5.248 11.850 hybrid contribution -0.880 0.752 1.168 1.645 sum -4.431 -9.261 -4.080 11.047 Atomic orbital electron populations 1.22420 0.97085 1.03304 1.01605 1.22668 0.94239 0.88879 1.04223 1.62100 1.59405 1.02665 1.02401 1.22126 0.98653 0.95112 0.90020 1.21663 1.00087 0.95048 0.98540 1.21451 0.98445 1.00425 0.93723 1.18621 0.94747 0.87519 0.95033 0.97650 1.21948 1.23483 0.99212 1.13124 0.90939 1.25596 0.95343 0.98590 0.98450 1.70021 1.30943 1.15054 1.39308 0.85699 0.78402 0.78755 0.80025 1.19277 1.21121 1.20454 1.22720 0.99917 0.95440 0.86584 0.90822 1.20652 0.73944 0.76841 0.88090 1.93160 1.90334 1.74187 1.58033 1.93066 1.79250 1.47537 1.96776 1.93106 1.32523 1.94396 1.96846 0.93888 0.91952 0.90267 0.88284 0.90613 0.88168 0.94011 0.93021 0.90365 0.94851 0.91610 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.55 8.60 71.98 0.62 -3.93 16 2 C 0.03 0.74 5.45 86.30 0.47 1.21 16 3 N -0.54 -18.38 4.52 -871.11 -3.93 -22.31 16 4 C 0.07 2.01 5.10 86.33 0.44 2.45 16 5 C -0.12 -4.06 6.09 30.65 0.19 -3.87 16 6 C -0.10 -4.60 5.03 30.68 0.15 -4.44 16 7 C 0.06 2.91 1.71 -11.49 -0.02 2.90 16 8 H 0.01 0.30 7.94 -2.39 -0.02 0.28 16 9 C -0.54 -28.97 7.22 25.60 0.18 -28.78 16 10 H 0.07 3.87 5.58 -2.91 -0.02 3.85 16 11 C 0.02 1.05 5.31 84.66 0.45 1.50 16 12 N -0.91 -52.09 11.36 21.45 0.24 -51.84 16 13 Si 0.94 43.87 29.54 68.60 2.03 45.90 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 C 0.06 2.56 1.07 44.94 0.05 2.60 16 18 H 0.07 2.93 6.59 -2.39 -0.02 2.92 16 19 C 0.46 18.76 2.42 71.98 0.17 18.93 16 20 F -0.18 -7.98 13.56 44.97 0.61 -7.37 16 21 F -0.18 -6.44 12.34 44.97 0.55 -5.89 16 22 F -0.19 -8.07 16.82 44.97 0.76 -7.31 16 23 H 0.04 1.22 5.22 -2.38 -0.01 1.21 16 24 H 0.06 1.42 6.75 -2.39 -0.02 1.40 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.10 2.19 8.02 -2.39 -0.02 2.17 16 27 H 0.08 2.23 5.69 -2.39 -0.01 2.21 16 28 H 0.10 2.38 8.04 -2.39 -0.02 2.36 16 29 H 0.04 1.18 6.82 -2.39 -0.02 1.16 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.07 3.40 6.17 -2.39 -0.01 3.38 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -58.62 265.15 4.07 -54.55 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.11 Total: 5.72 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 2.71 Total: -11.44 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -3.69 Total: -74.16 kcal Atomic # 9 Polarization: -22.49 SS G_CDS: 1.92 Total: -20.56 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -58.62 4.07 -54.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709973538.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.862 kcal (2) G-P(sol) polarization free energy of solvation -58.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds