Wall clock time and date at job start Mon Mar 30 2020 06:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99770 * 3 2 1 6 6 H 1.07998 * 119.99629 * 120.00096 * 5 3 2 7 7 C 1.37875 * 119.99955 * 300.00667 * 5 3 2 8 8 N 1.31515 * 119.99932 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99908 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47233 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47364 * 119.99503 * 9 7 5 12 12 H 1.48500 * 109.46997 * 239.99827 * 9 7 5 13 13 O 1.45194 * 109.47339 * 295.00188 * 3 2 1 14 14 C 1.34783 * 117.00168 * 89.99781 * 13 3 2 15 15 O 1.21548 * 119.99852 * 0.02562 * 14 13 3 16 16 C 1.47111 * 120.00031 * 179.97438 * 14 13 3 17 17 C 1.46745 * 127.02229 * 359.69009 * 16 14 13 18 18 C 1.34437 * 106.37291 * 179.82488 * 17 16 14 19 19 C 1.50694 * 125.45775 * 180.14449 * 18 17 16 20 20 N 1.36427 * 109.08482 * 0.43812 * 18 17 16 21 21 H 0.97001 * 124.81206 * 179.70462 * 20 18 17 22 22 C 1.34629 * 110.38247 * 359.70977 * 20 18 17 23 23 C 1.50697 * 125.90086 * 179.97438 * 22 20 18 24 24 H 1.08998 * 109.47250 * 59.99881 * 1 2 3 25 25 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 27 27 H 1.08998 * 109.47252 * 240.00195 * 2 1 3 28 28 H 1.08998 * 109.47250 * 120.00119 * 2 1 3 29 29 H 0.97003 * 119.99476 * 180.02562 * 8 7 5 30 30 H 1.07999 * 126.81428 * 359.97438 * 17 16 14 31 31 H 1.09006 * 109.47344 * 270.34003 * 19 18 17 32 32 H 1.08997 * 109.47374 * 30.34030 * 19 18 17 33 33 H 1.09000 * 109.47435 * 150.34056 * 19 18 17 34 34 H 1.08999 * 109.46831 * 270.04217 * 23 22 20 35 35 H 1.09001 * 109.47220 * 30.03323 * 23 22 20 36 36 H 1.08996 * 109.47801 * 150.04013 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3373 2.1732 9 14 6.0050 0.8800 1.3812 10 1 6.5989 1.5443 0.1932 11 1 6.4000 1.6157 2.6092 12 1 6.4962 -0.5190 1.4626 13 8 1.6559 2.0917 -1.2406 14 6 0.4678 2.7280 -1.2559 15 8 -0.2279 2.7403 -0.2593 16 6 0.0136 3.4086 -2.4785 17 6 0.7273 3.4970 -3.7577 18 6 -0.0620 4.2053 -4.5839 19 6 0.2573 4.5503 -6.0156 20 7 -1.1954 4.5674 -3.9165 21 1 -1.9195 5.0887 -4.2970 22 6 -1.1666 4.0987 -2.6547 23 6 -2.2391 4.2950 -1.6144 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8293 -0.0605 2.9502 30 1 1.6937 3.0745 -3.9901 31 1 0.7937 5.4986 -6.0500 32 1 0.8781 3.7659 -6.4486 33 1 -0.6688 4.6360 -6.5840 34 1 -2.0382 5.2076 -1.0533 35 1 -3.2097 4.3757 -2.1039 36 1 -2.2451 3.4438 -0.9336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:57 Heat of formation + Delta-G solvation = -63.252630 kcal Electronic energy + Delta-G solvation = -18577.368746 eV Core-core repulsion = 15640.771324 eV Total energy + Delta-G solvation = -2936.597422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.09104 -38.92644 -35.49217 -33.33729 -32.52725 -31.34961 -30.77171 -29.13416 -27.18719 -24.93682 -23.28477 -22.22454 -20.31401 -19.80005 -18.72477 -16.93077 -16.51160 -15.81104 -15.24473 -14.88844 -14.52040 -14.31725 -13.59981 -13.25202 -13.23944 -12.80524 -12.73318 -12.45916 -12.20564 -12.08504 -11.88792 -11.42861 -11.31210 -11.09257 -11.02823 -10.86965 -10.51698 -10.17241 -9.65515 -9.38775 -9.19357 -8.65617 -8.62593 -8.34415 -7.85679 -6.08952 -4.14744 1.95598 2.54924 3.14599 3.29469 3.36223 3.41926 4.03084 4.07873 4.45947 4.86942 4.97377 5.11941 5.23035 5.29524 5.44955 5.66012 5.72010 5.77472 5.90045 6.09199 6.19667 6.35145 6.41438 6.48968 6.62614 6.95312 7.02987 7.07546 7.15249 7.31365 7.45026 7.53241 7.73705 7.87888 8.11248 8.30239 8.83004 9.12123 9.50504 10.98036 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.005774 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.817001 B = 4848.467100 C = 5464.124423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.516 4.516 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.909 3.091 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.351 6.351 14 C 0.529 3.471 15 O -0.529 6.529 16 C -0.208 4.208 17 C -0.137 4.137 18 C -0.008 4.008 19 C -0.080 4.080 20 N -0.549 5.549 21 H 0.411 0.589 22 C 0.099 3.901 23 C -0.093 4.093 24 H 0.033 0.967 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.107 0.893 29 H 0.264 0.736 30 H 0.150 0.850 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.180 7.440 -12.805 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.554 4.554 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.267 6.267 14 C 0.375 3.625 15 O -0.422 6.422 16 C -0.216 4.216 17 C -0.161 4.161 18 C -0.116 4.116 19 C -0.137 4.137 20 N -0.146 5.146 21 H 0.248 0.752 22 C -0.018 4.018 23 C -0.150 4.150 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.376 7.377 -12.396 17.204 hybrid contribution 0.597 0.130 0.071 0.615 sum -8.779 7.507 -12.325 16.892 Atomic orbital electron populations 1.21850 0.98421 0.98759 1.00869 1.21998 0.92655 0.99484 1.03134 1.20615 0.94814 0.88713 0.79006 0.93590 1.21110 0.89889 1.38385 1.06049 0.91360 1.24875 0.99060 0.94928 0.95147 1.69913 1.35129 1.38214 1.09478 0.86264 0.84206 0.77785 0.78143 1.19519 1.20842 1.20798 1.86544 1.33932 1.62621 1.43554 1.19938 0.80496 0.75960 0.86143 1.90722 1.55811 1.60293 1.35391 1.19769 0.97106 1.10140 0.94620 1.21950 1.00147 1.02372 0.91623 1.20161 0.89131 1.06385 0.95956 1.20279 1.01763 1.02522 0.89176 1.41397 1.18336 1.44506 1.10353 0.75217 1.20509 0.97234 0.98294 0.85797 1.20562 0.93413 1.05080 0.95959 0.94751 0.95075 0.92853 0.94121 0.87513 0.92593 0.83181 0.91227 0.90024 0.92108 0.90457 0.92069 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.56 37.16 0.32 -2.95 16 2 C -0.13 -3.49 5.49 -26.73 -0.15 -3.64 16 3 C 0.22 6.15 2.25 -27.88 -0.06 6.08 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.94 8.90 -34.44 -0.31 -15.24 16 6 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.69 11.29 55.43 0.63 -25.07 16 9 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 O -0.35 -8.98 9.71 -40.72 -0.40 -9.37 16 14 C 0.53 12.17 6.40 34.33 0.22 12.39 16 15 O -0.53 -12.78 12.06 -19.30 -0.23 -13.01 16 16 C -0.21 -3.92 6.33 -103.01 -0.65 -4.57 16 17 C -0.14 -2.23 10.89 -37.49 -0.41 -2.64 16 18 C -0.01 -0.10 7.11 -81.89 -0.58 -0.69 16 19 C -0.08 -0.66 10.41 36.00 0.37 -0.29 16 20 N -0.55 -6.32 5.89 -5.20 -0.03 -6.35 16 21 H 0.41 3.09 8.96 -40.82 -0.37 2.73 16 22 C 0.10 1.47 7.22 -81.51 -0.59 0.88 16 23 C -0.09 -1.18 9.90 36.00 0.36 -0.82 16 24 H 0.03 0.77 6.06 -51.93 -0.31 0.46 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.27 7.79 -51.93 -0.40 0.87 16 27 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.11 2.97 5.95 -51.93 -0.31 2.66 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.15 2.39 8.06 -52.49 -0.42 1.96 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 1.58 6.51 -51.93 -0.34 1.24 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -32.70 302.17 -7.10 -39.80 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.03 Total: 2.77 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.57 Total: -9.84 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.60 Total: -31.41 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.63 Total: -22.38 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.70 -7.10 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.454 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds