Wall clock time and date at job start Mon Mar 30 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47108 * 2 1 4 4 C 1.37839 * 125.89631 * 270.00117 * 3 2 1 5 5 C 1.47114 * 127.02577 * 0.02562 * 4 3 2 6 6 O 1.21550 * 119.99748 * 0.02562 * 5 4 3 7 7 O 1.34780 * 120.00126 * 179.97438 * 5 4 3 8 8 C 1.45205 * 116.99834 * 179.97438 * 7 5 4 9 9 H 1.08991 * 109.47314 * 330.00975 * 8 7 5 10 10 C 1.53004 * 109.46458 * 90.00795 * 8 7 5 11 11 C 1.50694 * 109.47173 * 209.99980 * 8 7 5 12 12 H 1.08009 * 120.00223 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00278 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99647 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 120.00541 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.46986 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47423 * 120.00257 * 15 13 11 18 18 H 1.48500 * 109.47458 * 240.00208 * 15 13 11 19 19 C 1.46740 * 105.95480 * 180.02562 * 4 3 2 20 20 C 1.34434 * 106.37103 * 359.73373 * 19 4 3 21 21 N 1.34629 * 125.89673 * 89.99903 * 3 2 1 22 22 C 1.46499 * 124.80991 * 0.02562 * 21 3 2 23 23 H 1.09003 * 109.46735 * 299.99731 * 1 2 3 24 24 H 1.09001 * 109.47026 * 60.00050 * 1 2 3 25 25 H 1.08999 * 109.46894 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47238 * 239.99858 * 2 1 3 27 27 H 1.09004 * 109.47701 * 119.99684 * 2 1 3 28 28 H 1.09000 * 109.46958 * 299.99431 * 10 8 7 29 29 H 1.08996 * 109.47658 * 60.00136 * 10 8 7 30 30 H 1.09000 * 109.46616 * 179.97438 * 10 8 7 31 31 H 0.96997 * 120.00155 * 180.02562 * 14 13 11 32 32 H 1.07998 * 126.81700 * 180.02562 * 19 4 3 33 33 H 1.08003 * 125.45940 * 180.24648 * 20 19 4 34 34 H 1.09002 * 109.47391 * 89.99716 * 22 21 3 35 35 H 1.09001 * 109.46813 * 329.99772 * 22 21 3 36 36 H 1.09004 * 109.47041 * 209.99900 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3017 2.1828 -1.1166 5 6 2.1571 1.7756 -2.5229 6 8 1.7613 0.6590 -2.7946 7 8 2.4626 2.6411 -3.5099 8 6 2.2965 2.1711 -4.8736 9 1 2.4610 1.0943 -4.9094 10 6 0.8780 2.4865 -5.3524 11 6 3.2936 2.8616 -5.7680 12 1 3.9836 3.5815 -5.3529 13 6 3.3252 2.5745 -7.1161 14 7 2.4847 1.6983 -7.6217 15 14 4.5616 3.4299 -8.2246 16 1 5.3878 4.3631 -7.4172 17 1 5.4402 2.4160 -8.8614 18 1 3.8403 4.1904 -9.2766 19 6 2.7621 3.4831 -0.6161 20 6 2.7289 3.4061 0.7256 21 7 2.2954 2.1651 1.0906 22 6 2.1345 1.7085 2.4733 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.1567 1.9871 -4.7055 29 1 0.7134 3.5634 -5.3167 30 1 0.7534 2.1341 -6.3763 31 1 2.5071 1.4960 -8.5700 32 1 3.0630 4.3348 -1.2081 33 1 3.0039 4.1987 1.4057 34 1 3.0636 1.2530 2.8160 35 1 1.3303 0.9744 2.5223 36 1 1.8899 2.5585 3.1104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810583543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:53 Heat of formation + Delta-G solvation = -71.278817 kcal Electronic energy + Delta-G solvation = -18478.544098 eV Core-core repulsion = 15541.598634 eV Total energy + Delta-G solvation = -2936.945464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.32433 -40.68028 -37.39904 -35.30732 -34.57869 -33.72193 -31.64552 -29.31206 -27.74986 -27.43217 -24.99688 -23.80985 -22.59341 -21.15704 -19.85707 -18.70818 -18.37696 -17.58024 -16.79261 -16.69735 -16.13544 -16.06516 -15.27523 -14.93662 -14.66572 -14.21819 -14.09488 -13.94133 -13.57694 -13.30327 -13.16348 -13.08619 -12.95800 -12.80700 -12.74037 -12.38728 -12.34819 -12.12897 -11.90960 -11.53237 -11.21164 -10.94436 -10.59043 -9.59377 -9.17209 -8.27865 -6.44735 0.54333 1.41127 1.42895 1.47208 1.56883 1.80387 2.28501 2.40099 2.56198 3.02287 3.66511 3.96599 4.03038 4.10620 4.33371 4.35177 4.49088 4.53602 4.58011 4.65026 4.74880 4.79311 4.83380 4.89382 5.00786 5.08768 5.15121 5.29015 5.31579 5.49658 5.64509 5.71174 5.94227 6.05578 6.16278 6.36460 6.61792 7.12082 7.30329 8.80665 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.035820 B = 0.005181 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.492068 B = 5403.130324 C = 5908.623680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C 0.114 3.886 4 C -0.268 4.268 5 C 0.517 3.483 6 O -0.562 6.562 7 O -0.364 6.364 8 C 0.218 3.782 9 H 0.005 0.995 10 C -0.138 4.138 11 C -0.548 4.548 12 H 0.064 0.936 13 C 0.016 3.984 14 N -0.918 5.918 15 Si 0.986 3.014 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.269 1.269 19 C -0.176 4.176 20 C -0.001 4.001 21 N -0.432 5.432 22 C 0.057 3.943 23 H 0.073 0.927 24 H 0.026 0.974 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.020 0.980 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.271 0.729 32 H 0.143 0.857 33 H 0.215 0.785 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 1.048 22.068 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 C -0.005 4.005 4 C -0.276 4.276 5 C 0.366 3.634 6 O -0.456 6.456 7 O -0.280 6.280 8 C 0.165 3.835 9 H 0.022 0.978 10 C -0.196 4.196 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.184 4.184 14 N -0.556 5.556 15 Si 0.809 3.191 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.194 1.194 19 C -0.199 4.199 20 C -0.127 4.127 21 N -0.107 5.107 22 C -0.082 4.082 23 H 0.092 0.908 24 H 0.045 0.955 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.125 0.875 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.231 0.769 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.439 0.596 22.155 22.210 hybrid contribution 0.386 0.120 -1.349 1.408 sum -1.053 0.716 20.806 20.845 Atomic orbital electron populations 1.21612 0.93268 1.02942 1.01374 1.20348 0.97291 0.88265 1.04316 1.20664 0.99807 0.94926 0.85136 1.19756 1.20480 0.99244 0.88114 1.20901 0.73063 0.82337 0.87075 1.90672 1.46603 1.22812 1.85543 1.86542 1.78300 1.44970 1.18203 1.20305 0.95155 0.94369 0.73711 0.97752 1.21954 0.95574 0.99625 1.02469 1.21321 1.18361 1.25690 0.93150 0.91779 1.25870 0.98161 0.95598 0.98757 1.70034 1.37581 1.33739 1.14228 0.85092 0.77983 0.78250 0.77785 1.18853 1.19901 1.19374 1.22240 1.06258 0.96452 0.94989 1.22234 1.06298 0.88844 0.95284 1.43818 1.48878 1.10907 1.07107 1.22557 1.04883 1.03689 0.77092 0.90833 0.95514 0.90221 0.91104 0.87454 0.96128 0.93814 0.89881 0.91949 0.83871 0.76851 0.88901 0.88365 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.89 71.98 0.71 -2.49 16 2 C -0.06 -1.68 5.33 29.85 0.16 -1.52 16 3 C 0.11 3.43 6.18 42.04 0.26 3.69 16 4 C -0.27 -10.63 6.33 -18.82 -0.12 -10.75 16 5 C 0.52 26.22 7.92 70.15 0.56 26.78 16 6 O -0.56 -30.39 14.14 19.67 0.28 -30.12 16 7 O -0.36 -20.32 9.77 -56.91 -0.56 -20.88 16 8 C 0.22 13.18 2.56 29.85 0.08 13.26 16 9 H 0.00 0.31 7.16 -2.39 -0.02 0.30 16 10 C -0.14 -7.80 9.33 71.98 0.67 -7.13 16 11 C -0.55 -33.41 8.90 25.60 0.23 -33.18 16 12 H 0.06 3.86 7.81 -2.91 -0.02 3.84 16 13 C 0.02 0.90 5.30 84.65 0.45 1.35 16 14 N -0.92 -55.08 11.32 21.45 0.24 -54.84 16 15 Si 0.99 44.83 29.54 68.60 2.03 46.86 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 C -0.18 -5.73 11.00 23.62 0.26 -5.47 16 20 C 0.00 -0.02 11.32 83.11 0.94 0.92 16 21 N -0.43 -8.99 3.08 -532.31 -1.64 -10.63 16 22 C 0.06 0.49 10.61 127.77 1.36 1.84 16 23 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 24 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 2.42 6.51 -2.39 -0.02 2.40 16 27 H 0.11 1.87 7.58 -2.38 -0.02 1.85 16 28 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.08 4.90 6.07 -2.39 -0.01 4.89 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.14 4.69 8.06 -2.91 -0.02 4.66 16 33 H 0.21 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.10 0.63 7.48 -2.39 -0.02 0.62 16 36 H 0.12 0.38 8.13 -2.38 -0.02 0.36 16 Total: -1.00 -79.23 307.85 6.96 -72.27 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.06 Total: 10.04 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 5.55 Total: -12.71 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -1.40 Total: -65.46 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.28 Total: -51.00 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -79.23 6.96 -72.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810583543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.992 kcal (2) G-P(sol) polarization free energy of solvation -79.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds