Wall clock time and date at job start Mon Mar 30 2020 06:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48503 * 109.46787 * 240.00122 * 3 2 1 5 5 H 1.48497 * 109.46883 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47412 * 119.99659 * 3 2 1 7 7 C 1.37879 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99529 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00313 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47510 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47387 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.47315 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99762 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99928 * 180.02562 * 12 11 10 15 15 C 1.47582 * 134.48944 * 179.97438 * 14 12 11 16 16 C 1.53947 * 86.11400 * 204.63412 * 15 14 12 17 17 C 1.52999 * 113.74166 * 221.94088 * 16 15 14 18 18 C 1.52997 * 109.47284 * 183.07861 * 17 16 15 19 19 C 1.52999 * 117.49761 * 243.62099 * 18 17 16 20 20 C 1.52991 * 60.00298 * 252.50829 * 19 18 17 21 21 C 1.47575 * 134.49202 * 359.97438 * 14 12 11 22 22 H 0.96995 * 120.00426 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46918 * 60.00096 * 9 7 2 24 24 H 1.08999 * 109.47003 * 300.00537 * 9 7 2 25 25 H 1.09003 * 109.47238 * 59.99533 * 10 9 7 26 26 H 1.09005 * 109.46565 * 300.00034 * 10 9 7 27 27 H 1.09003 * 109.47560 * 59.99428 * 11 10 9 28 28 H 1.09005 * 109.47048 * 299.99435 * 11 10 9 29 29 H 1.09005 * 113.76570 * 90.33344 * 15 14 12 30 30 H 1.08998 * 113.87229 * 318.94706 * 15 14 12 31 31 H 1.09002 * 113.73955 * 90.73971 * 16 15 14 32 32 H 1.09003 * 109.47233 * 303.07501 * 17 16 15 33 33 H 1.08998 * 109.47290 * 63.07731 * 17 16 15 34 34 H 1.08996 * 115.55036 * 29.32501 * 18 17 16 35 35 H 1.09001 * 117.50273 * 359.97438 * 19 18 17 36 36 H 1.09002 * 117.50146 * 145.01823 * 19 18 17 37 37 H 1.09002 * 117.50392 * 252.51726 * 20 19 18 38 38 H 1.09006 * 117.50162 * 107.48566 * 20 19 18 39 39 H 1.08997 * 113.77525 * 41.06032 * 21 14 12 40 40 H 1.09007 * 113.77037 * 269.66489 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0033 12 6 2.4597 -6.1325 0.0049 13 8 3.6521 -5.9109 0.0052 14 7 2.0105 -7.4032 0.0051 15 6 2.6583 -8.7292 0.0061 16 6 1.3585 -9.2486 -0.6348 17 6 0.8859 -10.5894 -0.0693 18 6 -0.3631 -11.0494 -0.8238 19 6 -1.6639 -11.1726 -0.0278 20 6 -0.9244 -12.4317 -0.4845 21 6 0.6732 -8.0274 0.0045 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5563 0.8919 25 1 2.8720 -3.6035 0.8926 26 1 2.8719 -3.6051 -0.8874 27 1 0.8539 -5.0454 -0.8868 28 1 0.8535 -5.0443 0.8932 29 1 2.8453 -9.1261 1.0040 30 1 3.5277 -8.7959 -0.6479 31 1 1.3672 -9.2264 -1.7245 32 1 1.6753 -11.3319 -0.1868 33 1 0.6497 -10.4747 0.9886 34 1 -0.4359 -10.7169 -1.8592 35 1 -1.6298 -10.9264 1.0335 36 1 -2.5929 -10.9210 -0.5394 37 1 -1.3668 -13.0084 -1.2968 38 1 -0.4038 -13.0135 0.2762 39 1 -0.0427 -7.5320 -0.6513 40 1 0.2769 -8.2181 1.0019 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598780310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:14 Heat of formation + Delta-G solvation = -4.293282 kcal Electronic energy + Delta-G solvation = -17647.275304 eV Core-core repulsion = 14849.067646 eV Total energy + Delta-G solvation = -2798.207658 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35180 -38.27098 -37.14591 -34.13857 -32.07208 -31.35676 -28.35562 -26.57348 -26.26796 -23.54673 -22.68971 -21.27537 -20.66508 -20.02150 -18.76011 -16.81349 -16.35102 -16.24295 -15.57820 -15.24357 -14.97953 -14.46992 -14.37103 -13.72954 -13.12995 -12.89820 -12.68406 -12.43965 -12.10989 -11.87428 -11.83866 -11.69674 -11.53865 -11.28892 -10.97175 -10.75953 -10.60032 -10.53012 -10.44529 -10.20445 -9.63730 -9.58502 -9.22029 -8.99002 -8.62511 -8.29357 -5.95194 -3.96562 2.86175 2.99749 3.38443 3.41507 3.44381 3.45629 4.04217 4.29880 4.50608 4.55242 4.62201 4.66813 4.83640 5.00897 5.05053 5.24057 5.28103 5.30864 5.37140 5.40676 5.46925 5.51997 5.59448 5.65154 5.72088 5.75962 5.78509 5.91539 5.97017 6.06604 6.32485 6.76396 6.97176 7.19015 7.72761 7.81606 7.86784 8.05723 8.46181 8.49840 9.10273 9.67128 11.16371 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.041678 B = 0.003153 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.663200 B = 8879.069137 C = 9452.868400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.131 4.131 12 C 0.535 3.465 13 O -0.539 6.539 14 N -0.654 5.654 15 C 0.107 3.893 16 C -0.119 4.119 17 C -0.080 4.080 18 C -0.151 4.151 19 C -0.180 4.180 20 C -0.185 4.185 21 C 0.108 3.892 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.015 0.985 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -25.341 -0.543 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.171 4.171 12 C 0.326 3.674 13 O -0.415 6.415 14 N -0.391 5.391 15 C -0.016 4.016 16 C -0.138 4.138 17 C -0.118 4.118 18 C -0.169 4.169 19 C -0.217 4.217 20 C -0.222 4.222 21 C -0.015 4.015 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.627 -24.847 -0.539 24.991 hybrid contribution 0.272 0.893 0.051 0.935 sum -2.355 -23.953 -0.489 24.074 Atomic orbital electron populations 1.69949 1.06038 1.26638 1.51179 1.25020 0.94861 0.99233 0.95393 0.86645 0.79566 0.83044 0.78688 1.20225 1.21330 1.20226 1.21245 0.93167 0.91029 1.50212 0.92625 1.19120 0.93945 0.91412 0.97098 1.21462 0.98666 0.91536 1.01671 1.21787 0.98043 0.93699 1.03557 1.21026 0.90012 0.82041 0.74302 1.90675 1.17457 1.83700 1.49624 1.50147 1.09436 1.04341 1.75204 1.23132 0.96887 0.81091 1.00479 1.23195 0.95716 0.93749 1.01095 1.21143 0.95921 0.95686 0.99046 1.22341 0.94475 0.99916 1.00157 1.23047 0.96002 1.02101 1.00562 1.22970 1.04594 0.90921 1.03690 1.23254 0.86853 0.90654 1.00729 0.93019 0.96609 0.96633 0.92735 0.92706 0.89542 0.89574 0.90207 0.90328 0.87998 0.90872 0.91227 0.87663 0.88735 0.88873 0.88987 0.88900 0.89870 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.52 -15.32 9.11 -34.44 -0.31 -15.64 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.16 4.44 -26.74 -0.12 -2.28 16 11 C -0.13 -2.35 5.45 -27.89 -0.15 -2.51 16 12 C 0.53 9.56 8.06 -10.98 -0.09 9.47 16 13 O -0.54 -11.78 16.71 5.56 0.09 -11.69 16 14 N -0.65 -8.77 3.61 -178.37 -0.64 -9.41 16 15 C 0.11 1.09 8.40 -2.97 -0.02 1.07 16 16 C -0.12 -0.90 3.80 -89.70 -0.34 -1.24 16 17 C -0.08 -0.47 5.34 -26.73 -0.14 -0.61 16 18 C -0.15 -0.91 5.74 -90.62 -0.52 -1.43 16 19 C -0.18 -1.08 10.18 -26.74 -0.27 -1.35 16 20 C -0.18 -1.05 10.25 -26.73 -0.27 -1.33 16 21 C 0.11 1.00 8.17 -2.98 -0.02 0.98 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 26 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.40 7.61 -51.93 -0.40 0.01 16 34 H 0.11 0.64 8.02 -51.93 -0.42 0.22 16 35 H 0.09 0.54 8.03 -51.93 -0.42 0.13 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.67 7.92 -51.92 -0.41 0.26 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -34.14 335.26 -9.38 -43.52 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -7.09 Total: -5.15 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.51 Total: -12.89 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.09 Total: -36.16 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.14 -9.38 -43.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598780310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.230 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds