Wall clock time and date at job start Mon Mar 30 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50700 * 109.47098 * 2 1 4 4 C 1.38141 * 119.97931 * 99.99902 * 3 2 1 5 5 C 1.38857 * 119.95210 * 179.97438 * 4 3 2 6 6 N 1.39815 * 120.04912 * 179.97438 * 5 4 3 7 7 C 1.46498 * 120.00022 * 175.12853 * 6 5 4 8 8 H 1.08999 * 109.47095 * 37.99294 * 7 6 5 9 9 C 1.50697 * 109.47260 * 277.99263 * 7 6 5 10 10 H 1.07999 * 119.99818 * 0.02562 * 9 7 6 11 11 C 1.37874 * 120.00149 * 179.72847 * 9 7 6 12 12 N 1.31517 * 120.00036 * 180.02562 * 11 9 7 13 13 Si 1.86800 * 119.99999 * 359.97438 * 11 9 7 14 14 H 1.48497 * 109.47301 * 90.00428 * 13 11 9 15 15 H 1.48500 * 109.47229 * 210.00351 * 13 11 9 16 16 H 1.48501 * 109.47260 * 330.00386 * 13 11 9 17 17 C 1.53004 * 109.47048 * 157.99563 * 7 6 5 18 18 C 1.53004 * 109.46954 * 294.72077 * 17 7 6 19 19 C 1.38894 * 119.90232 * 0.25473 * 5 4 3 20 20 C 1.38111 * 119.94798 * 359.51203 * 19 5 4 21 21 C 1.38451 * 119.97250 * 280.02248 * 3 2 1 22 22 F 1.35101 * 119.95322 * 359.97438 * 21 3 2 23 23 H 1.08999 * 109.47576 * 59.99870 * 1 2 3 24 24 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47324 * 300.00222 * 1 2 3 26 26 H 1.09005 * 109.47324 * 239.99778 * 2 1 3 27 27 H 1.09000 * 109.47148 * 119.99814 * 2 1 3 28 28 H 1.07994 * 120.02122 * 359.97438 * 4 3 2 29 29 H 0.97006 * 120.00299 * 355.12500 * 6 5 4 30 30 H 0.96998 * 120.00019 * 179.97438 * 12 11 9 31 31 H 1.08996 * 109.47594 * 54.71901 * 17 7 6 32 32 H 1.09000 * 109.46803 * 174.72574 * 17 7 6 33 33 H 1.09003 * 109.46855 * 185.07373 * 18 17 7 34 34 H 1.09001 * 109.47047 * 305.06922 * 18 17 7 35 35 H 1.08997 * 109.46923 * 65.06978 * 18 17 7 36 36 H 1.07996 * 120.02930 * 179.74666 * 19 5 4 37 37 H 1.08000 * 119.97286 * 180.23021 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.4582 2.0024 1.1784 5 6 2.9214 3.3114 1.1777 6 7 3.3526 3.9022 2.3693 7 6 3.9402 5.2440 2.3509 8 1 3.4110 5.8625 1.6259 9 6 5.3940 5.1505 1.9652 10 1 5.8359 4.1879 1.7545 11 6 6.1583 6.2945 1.8755 12 7 7.4269 6.2129 1.5384 13 14 5.3917 7.9603 2.2313 14 1 5.5379 8.2743 3.6753 15 1 6.0773 9.0029 1.4262 16 1 3.9503 7.9282 1.8752 17 6 3.8207 5.8722 3.7409 18 6 2.3439 6.0881 4.0777 19 6 2.9504 4.0350 -0.0076 20 6 2.5281 3.4479 -1.1842 21 6 2.0660 2.1425 -1.1810 22 9 1.6490 1.5719 -2.3324 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 2.4309 1.4393 2.0995 29 1 3.2626 3.4236 3.2083 30 1 7.9646 7.0178 1.4749 31 1 4.2684 5.2075 4.4798 32 1 4.3398 6.8305 3.7523 33 1 2.2614 6.6169 5.0273 34 1 1.8744 6.6787 3.2910 35 1 1.8439 5.1226 4.1548 36 1 3.3065 5.0545 -0.0098 37 1 2.5540 4.0090 -2.1067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690096607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:26 Heat of formation + Delta-G solvation = -33.197350 kcal Electronic energy + Delta-G solvation = -18427.268504 eV Core-core repulsion = 15504.347166 eV Total energy + Delta-G solvation = -2922.921338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.23028 -38.98598 -36.40692 -33.89808 -32.45712 -31.80604 -29.49899 -28.02762 -26.72782 -23.81503 -22.82516 -22.08447 -20.98595 -19.57123 -17.13863 -16.82213 -16.44387 -16.06906 -15.07409 -14.91194 -14.22574 -14.12339 -13.70231 -13.42921 -13.30274 -12.80475 -12.74071 -12.57021 -12.19793 -12.14488 -11.94232 -11.74683 -11.51708 -11.26008 -10.88977 -10.76589 -10.57422 -10.33957 -10.07159 -9.80123 -9.51989 -8.87178 -8.68855 -8.39411 -6.57231 -6.19663 -4.20826 1.78453 1.98737 3.14564 3.25066 3.28818 4.18936 4.25548 4.29998 4.90474 4.95971 5.07353 5.16778 5.37579 5.46150 5.64638 5.68458 5.72561 5.78429 5.84577 5.88789 5.98296 6.01618 6.25907 6.32558 6.35367 6.39082 6.45208 6.54167 6.70070 6.79343 6.88665 6.92922 7.00511 7.39313 7.51535 8.01175 8.39445 8.56080 8.88257 9.40422 10.93302 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.028239 B = 0.005999 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.307740 B = 4666.545829 C = 5119.414972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.070 4.070 4 C -0.190 4.190 5 C 0.240 3.760 6 N -0.720 5.720 7 C 0.245 3.755 8 H 0.038 0.962 9 C -0.530 4.530 10 H 0.079 0.921 11 C 0.074 3.926 12 N -0.892 5.892 13 Si 0.879 3.121 14 H -0.276 1.276 15 H -0.294 1.294 16 H -0.264 1.264 17 C -0.140 4.140 18 C -0.151 4.151 19 C -0.163 4.163 20 C -0.102 4.102 21 C 0.010 3.990 22 F -0.156 7.156 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.389 0.611 30 H 0.266 0.734 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.137 0.863 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 -6.242 0.224 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.072 4.072 4 C -0.213 4.213 5 C 0.132 3.868 6 N -0.343 5.343 7 C 0.141 3.859 8 H 0.055 0.945 9 C -0.569 4.569 10 H 0.097 0.903 11 C -0.129 4.129 12 N -0.529 5.529 13 Si 0.709 3.291 14 H -0.203 1.203 15 H -0.221 1.221 16 H -0.189 1.189 17 C -0.177 4.177 18 C -0.209 4.209 19 C -0.186 4.186 20 C -0.121 4.121 21 C -0.011 4.011 22 F -0.135 7.135 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.222 0.778 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.154 0.846 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.911 -5.925 0.160 13.304 hybrid contribution -0.099 0.791 0.353 0.871 sum -12.010 -5.134 0.513 13.071 Atomic orbital electron populations 1.21708 0.94941 1.01273 1.02226 1.20413 0.96059 0.92666 1.02647 1.19432 0.99905 0.95923 0.91918 1.20209 1.09279 0.94382 0.97456 1.17832 0.90500 0.90893 0.87619 1.44972 1.65419 1.18792 1.05109 1.19157 0.94165 0.79741 0.92818 0.94485 1.21427 0.92732 0.95671 1.47031 0.90335 1.24945 0.94667 0.98765 0.94542 1.69886 1.06474 1.29168 1.47415 0.86989 0.79889 0.84329 0.77906 1.20345 1.22094 1.18890 1.22190 0.94798 1.01085 0.99676 1.21840 0.97821 1.00977 1.00243 1.20671 1.05704 1.01518 0.90677 1.20819 0.99127 0.93308 0.98883 1.17132 1.09293 0.93214 0.81498 1.91371 1.88956 1.85119 1.48020 0.92529 0.92723 0.92596 0.91120 0.91051 0.86191 0.77806 0.92434 0.91717 0.92070 0.93834 0.93283 0.93002 0.84551 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.15 0.37 -1.25 16 2 C -0.08 -1.02 5.78 -27.89 -0.16 -1.19 16 3 C -0.07 -1.11 5.14 -104.58 -0.54 -1.65 16 4 C -0.19 -3.08 9.52 -39.39 -0.37 -3.46 16 5 C 0.24 4.43 6.59 -83.74 -0.55 3.88 16 6 N -0.72 -13.45 4.82 -53.27 -0.26 -13.70 16 7 C 0.25 5.26 1.27 -69.08 -0.09 5.17 16 8 H 0.04 0.83 5.49 -51.93 -0.29 0.55 16 9 C -0.53 -13.97 9.28 -34.44 -0.32 -14.29 16 10 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 11 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 12 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 13 Si 0.88 20.50 24.42 -169.99 -4.15 16.34 16 14 H -0.28 -6.26 6.83 56.52 0.39 -5.88 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.26 -5.81 6.53 56.52 0.37 -5.45 16 17 C -0.14 -2.71 4.96 -26.73 -0.13 -2.84 16 18 C -0.15 -2.42 9.74 37.16 0.36 -2.05 16 19 C -0.16 -3.11 9.18 -39.39 -0.36 -3.47 16 20 C -0.10 -1.77 10.02 -39.54 -0.40 -2.17 16 21 C 0.01 0.17 7.24 -39.41 -0.29 -0.12 16 22 F -0.16 -2.60 16.65 2.25 0.04 -2.56 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 27 H 0.07 0.81 8.00 -51.93 -0.42 0.39 16 28 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 29 H 0.39 6.38 8.59 -40.82 -0.35 6.03 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.29 3.25 -51.93 -0.17 1.12 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.75 7.90 -51.93 -0.41 0.34 16 36 H 0.14 2.77 6.21 -52.49 -0.33 2.44 16 37 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 303.09 15.07 4.57 4.57 Total: -1.00 -28.38 303.09 -6.96 -35.34 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.36 Total: 7.05 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.58 Total: -21.51 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.52 Total: -39.24 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.15 Total: 16.34 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.38 -6.96 -35.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690096607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.146 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds