Wall clock time and date at job start Mon Mar 30 2020 06:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 9 9 C 1.50696 * 109.46999 * 179.97438 * 7 6 5 10 10 O 1.21283 * 120.00591 * 240.00017 * 9 7 6 11 11 N 1.34774 * 119.99972 * 60.00356 * 9 7 6 12 12 C 1.47068 * 136.06002 * 359.62798 * 11 9 7 13 13 C 1.53752 * 87.89354 * 152.96333 * 12 11 9 14 14 C 1.50699 * 114.08838 * 139.78163 * 13 12 11 15 15 H 1.08009 * 119.99586 * 266.56093 * 14 13 12 16 16 C 1.37869 * 120.00139 * 86.56529 * 14 13 12 17 17 N 1.31515 * 120.00069 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00110 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47085 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47269 * 119.99639 * 18 16 14 21 21 H 1.48504 * 109.46931 * 239.99813 * 18 16 14 22 22 C 1.47071 * 136.05895 * 179.97438 * 11 9 7 23 23 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 24 24 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 26 26 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 30 30 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 31 31 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 32 32 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 33 33 H 1.09000 * 113.46978 * 267.69678 * 12 11 9 34 34 H 1.09002 * 113.46274 * 38.13238 * 12 11 9 35 35 H 1.09000 * 114.57231 * 272.66836 * 13 12 11 36 36 H 0.97001 * 120.00426 * 180.02562 * 17 16 14 37 37 H 1.08998 * 113.46651 * 321.85974 * 22 11 9 38 38 H 1.08996 * 113.46964 * 92.30307 * 22 11 9 39 39 H 1.09001 * 109.47375 * 59.99908 * 23 7 6 40 40 H 1.09000 * 109.47140 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 1 3.9331 0.3056 1.2498 9 6 4.0707 -1.4329 2.4802 10 8 3.2820 -1.8934 3.2782 11 7 5.3956 -1.5570 2.6941 12 6 6.6238 -1.1585 1.9901 13 6 7.3304 -1.1332 3.3554 14 6 8.7297 -1.6924 3.3342 15 1 8.8992 -2.7323 3.5716 16 6 9.7933 -0.8765 3.0119 17 7 9.5868 0.3896 2.7224 18 14 11.5277 -1.5698 2.9849 19 1 11.4906 -3.0102 3.3447 20 1 12.1022 -1.4136 1.6245 21 1 12.3690 -0.8368 3.9648 22 6 6.2494 -2.1558 3.7311 23 6 2.0395 -0.7214 1.2494 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.6767 -0.2076 -2.1392 28 1 1.6767 -1.7490 -1.2490 29 1 3.9334 -1.2354 -2.1389 30 1 3.9337 0.3057 -1.2486 31 1 3.7158 -2.4708 0.0005 32 1 5.1695 -1.4441 0.0006 33 1 7.0069 -1.9257 1.3173 34 1 6.5546 -0.1788 1.5173 35 1 7.2532 -0.1854 3.8882 36 1 10.3350 0.9636 2.4953 37 1 5.8613 -2.0256 4.7413 38 1 6.5336 -3.1862 3.5177 39 1 1.6758 -1.7490 1.2493 40 1 1.6761 -0.2079 2.1395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:29 Heat of formation + Delta-G solvation = -36.553190 kcal Electronic energy + Delta-G solvation = -18895.269004 eV Core-core repulsion = 16095.662452 eV Total energy + Delta-G solvation = -2799.606553 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.94708 -38.29020 -36.75296 -32.88901 -32.54599 -30.93238 -28.97993 -26.40439 -25.31254 -24.93012 -22.94405 -21.63143 -20.22448 -19.61692 -18.07161 -16.78952 -16.15104 -15.53557 -14.89100 -14.82245 -14.49095 -14.29202 -14.10537 -13.39685 -13.22913 -12.64059 -12.40482 -12.37895 -12.06808 -11.79513 -11.50800 -11.48678 -11.27932 -11.07504 -10.97226 -10.92584 -10.79498 -10.48948 -10.38766 -10.28286 -9.99625 -9.50644 -9.19640 -8.88638 -8.58485 -7.83158 -6.19395 -4.24822 3.21565 3.22054 3.30981 3.34440 3.63448 4.32541 4.68758 4.70597 4.75299 5.09798 5.12813 5.17833 5.25682 5.40097 5.47511 5.53590 5.65208 5.67495 5.74428 5.81988 5.97736 6.00969 6.04590 6.16339 6.19605 6.20808 6.24298 6.27935 6.32216 6.41278 6.47254 6.53602 6.57379 6.69286 6.83316 7.55143 7.78588 8.17669 8.57609 8.79352 8.82183 9.42145 10.90401 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.036238 B = 0.004794 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.487616 B = 5838.643241 C = 6274.258900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.099 4.099 8 H 0.092 0.908 9 C 0.535 3.465 10 O -0.568 6.568 11 N -0.642 5.642 12 C 0.100 3.900 13 C 0.033 3.967 14 C -0.517 4.517 15 H 0.064 0.936 16 C 0.068 3.932 17 N -0.886 5.886 18 Si 0.895 3.105 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.098 3.902 23 C -0.091 4.091 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.263 0.737 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 -0.133 -8.148 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.149 4.149 7 C -0.120 4.120 8 H 0.110 0.890 9 C 0.324 3.676 10 O -0.448 6.448 11 N -0.376 5.376 12 C -0.022 4.022 13 C 0.014 3.986 14 C -0.555 4.555 15 H 0.082 0.918 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.024 4.024 23 C -0.129 4.129 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.983 -0.183 -7.820 14.310 hybrid contribution 1.043 -0.261 -0.143 1.085 sum -10.940 -0.445 -7.963 13.538 Atomic orbital electron populations 1.21806 0.95313 1.01747 1.01409 1.21167 0.95357 0.99683 0.94989 0.91215 1.21616 0.95640 1.00633 0.97288 1.21522 0.95476 1.00942 0.97502 1.21535 1.01356 0.99150 0.92875 1.21213 0.96959 1.00612 0.93208 0.89014 1.20153 0.80456 0.79982 0.86978 1.90616 1.54667 1.51422 1.48136 1.50023 1.03603 1.56308 1.27620 1.23621 0.80069 0.98517 1.00023 1.20402 0.92119 0.95012 0.91044 1.20962 0.90225 0.96465 1.47829 0.91809 1.25022 0.99330 0.94685 0.94456 1.69961 1.31737 1.04911 1.45684 0.86493 0.84169 0.79375 0.77740 1.19557 1.20891 1.20865 1.23321 0.89015 0.98951 0.91132 1.21378 0.92836 1.01411 0.97248 0.92747 0.92692 0.92902 0.92197 0.92045 0.91800 0.91744 0.91872 0.90804 0.90876 0.92251 0.91372 0.92696 0.92591 0.91026 0.91457 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 37.15 0.34 -1.05 16 2 C -0.09 -1.03 2.72 -90.62 -0.25 -1.27 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -1.17 5.20 -26.73 -0.14 -1.31 16 5 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 6 C -0.11 -1.53 5.09 -26.73 -0.14 -1.67 16 7 C -0.10 -1.53 2.41 -91.77 -0.22 -1.75 16 8 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 9 C 0.53 10.65 7.40 -10.99 -0.08 10.56 16 10 O -0.57 -12.95 16.76 5.56 0.09 -12.86 16 11 N -0.64 -13.22 3.64 -185.07 -0.67 -13.90 16 12 C 0.10 2.09 6.28 -8.38 -0.05 2.04 16 13 C 0.03 0.79 3.80 -91.13 -0.35 0.44 16 14 C -0.52 -13.12 8.82 -34.44 -0.30 -13.42 16 15 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -23.98 13.26 55.43 0.74 -23.24 16 18 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 C 0.10 2.08 8.17 -8.52 -0.07 2.01 16 23 C -0.09 -1.26 3.77 -26.73 -0.10 -1.36 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.09 6.33 -51.93 -0.33 0.76 16 33 H 0.07 1.49 8.06 -51.93 -0.42 1.08 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 39 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 40 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -28.15 319.37 -8.71 -36.86 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.05 Total: -0.02 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.61 Total: -6.58 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.06 Total: -37.14 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.15 -8.71 -36.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.304 kcal (2) G-P(sol) polarization free energy of solvation -28.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds