Wall clock time and date at job start Mon Mar 30 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99509 * 2 1 4 4 C 1.50696 * 109.47327 * 270.00157 * 3 2 1 5 5 H 1.07998 * 120.00178 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99648 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00430 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99781 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47053 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47546 * 119.99558 * 8 6 4 11 11 H 1.48497 * 109.47013 * 239.99637 * 8 6 4 12 12 C 1.34771 * 120.00261 * 180.02562 * 2 1 3 13 13 O 1.21289 * 119.99960 * 179.97438 * 12 2 1 14 14 C 1.50695 * 120.00063 * 359.72180 * 12 2 1 15 15 C 1.53004 * 109.47319 * 180.27834 * 14 12 2 16 16 H 1.09005 * 110.35605 * 308.87276 * 15 14 12 17 17 C 1.54584 * 110.40217 * 71.19728 * 15 14 12 18 18 C 1.56188 * 104.51797 * 118.76277 * 17 15 14 19 19 H 1.08997 * 116.49010 * 160.44073 * 18 17 15 20 20 C 1.55930 * 104.56194 * 289.79448 * 18 17 15 21 21 C 1.54588 * 104.64217 * 70.28043 * 20 18 17 22 22 C 1.55920 * 104.64408 * 0.02562 * 21 20 18 23 23 H 1.09005 * 116.53284 * 160.39500 * 22 21 20 24 24 C 1.56953 * 100.65477 * 33.77688 * 22 21 20 25 25 H 1.08997 * 109.47272 * 269.99551 * 1 2 3 26 26 H 1.08999 * 109.47914 * 30.00186 * 1 2 3 27 27 H 1.09007 * 109.46951 * 149.99742 * 1 2 3 28 28 H 1.08996 * 109.47057 * 30.00477 * 3 2 1 29 29 H 1.09009 * 109.46764 * 150.00108 * 3 2 1 30 30 H 0.97001 * 120.00333 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47378 * 300.27666 * 14 12 2 32 32 H 1.08991 * 109.47517 * 60.27907 * 14 12 2 33 33 H 1.08999 * 110.40053 * 237.58799 * 17 15 14 34 34 H 1.09007 * 110.40053 * 359.97438 * 17 15 14 35 35 H 1.08992 * 110.40288 * 189.07113 * 20 18 17 36 36 H 1.09004 * 110.39950 * 311.37863 * 20 18 17 37 37 H 1.08996 * 110.39921 * 241.21068 * 21 20 18 38 38 H 1.08998 * 110.39899 * 118.79295 * 21 20 18 39 39 H 1.08998 * 112.02229 * 63.16982 * 24 22 21 40 40 H 1.08994 * 112.02732 * 189.69468 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0960 -2.2417 6 6 3.1266 2.8777 -1.6726 7 7 3.5539 3.6178 -0.6730 8 14 3.4373 3.4175 -3.4337 9 1 2.8595 2.4175 -4.3672 10 1 2.8002 4.7385 -3.6664 11 1 4.8998 3.5253 -3.6677 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4722 0.0052 15 6 2.3798 -3.6351 0.0104 16 1 3.1137 -3.5100 -0.7859 17 6 3.0849 -3.7352 1.3824 18 6 2.6909 -5.1465 1.9231 19 1 3.3244 -5.5610 2.7072 20 6 1.1742 -5.0261 2.2646 21 6 0.4713 -4.9241 0.8916 22 6 1.6294 -4.9932 -0.1502 23 1 1.3528 -5.2673 -1.1683 24 6 2.6223 -5.9623 0.5836 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3635 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6083 2.0284 0.5139 29 1 3.1499 1.1385 0.5139 30 1 4.0307 4.4438 -0.8502 31 1 0.7588 -2.5261 0.8955 32 1 0.7589 -2.5340 -0.8844 33 1 4.1655 -3.6613 1.2605 34 1 2.7235 -2.9556 2.0531 35 1 0.8339 -5.9119 2.8008 36 1 0.9880 -4.1297 2.8563 37 1 -0.0607 -3.9766 0.8066 38 1 -0.2145 -5.7598 0.7528 39 1 2.1930 -6.9534 0.7298 40 1 3.5901 -6.0106 0.0845 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:27 Heat of formation + Delta-G solvation = -42.368303 kcal Electronic energy + Delta-G solvation = -19134.844222 eV Core-core repulsion = 16334.985507 eV Total energy + Delta-G solvation = -2799.858715 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53761 -38.48946 -34.73949 -32.66480 -31.79038 -29.81681 -28.64050 -27.76541 -26.03846 -25.09241 -22.65664 -21.52477 -19.94580 -18.72225 -17.87434 -16.55985 -16.49429 -16.05881 -15.31738 -14.83505 -14.79994 -14.35291 -13.66366 -13.01474 -12.66678 -12.46226 -12.15745 -12.04422 -11.93968 -11.74770 -11.37658 -11.26306 -11.25039 -11.12011 -10.92360 -10.83746 -10.69224 -10.54607 -10.32287 -10.16042 -10.09796 -9.73349 -9.56875 -8.74793 -8.41619 -7.56982 -6.01935 -4.06483 3.30881 3.38187 3.42076 3.55377 4.04241 4.46147 4.51674 4.53615 4.56335 5.17248 5.19715 5.24990 5.31619 5.36843 5.38567 5.41824 5.53034 5.60641 5.64925 5.73091 5.81218 5.87591 5.90761 5.96085 6.02267 6.09642 6.20192 6.22354 6.24462 6.30047 6.42167 6.51891 6.65240 7.11486 7.48739 7.60548 7.95136 8.27120 8.50506 8.94370 9.19409 9.58811 11.06136 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.004919 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.650569 B = 5690.605081 C = 5818.462157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.606 5.606 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.501 3.499 13 O -0.541 6.541 14 C -0.135 4.135 15 C -0.071 4.071 16 H 0.080 0.920 17 C -0.103 4.103 18 C -0.109 4.109 19 H 0.092 0.908 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.102 4.102 23 H 0.095 0.905 24 C -0.124 4.124 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 -16.962 4.050 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.339 5.339 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.288 3.712 13 O -0.418 6.418 14 C -0.175 4.175 15 C -0.090 4.090 16 H 0.098 0.902 17 C -0.140 4.140 18 C -0.127 4.127 19 H 0.111 0.889 20 C -0.158 4.158 21 C -0.165 4.165 22 C -0.120 4.120 23 H 0.113 0.887 24 C -0.161 4.161 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.018 -16.743 4.102 18.612 hybrid contribution 0.033 0.561 -0.990 1.138 sum -6.985 -16.182 3.112 17.898 Atomic orbital electron populations 1.21609 0.81684 1.02456 1.00222 1.48176 1.06039 1.07983 1.71697 1.19262 0.92537 0.78286 0.97407 1.21482 1.36247 1.06157 0.92378 0.92497 1.24942 0.95409 0.96428 0.97397 1.69943 1.38550 1.14346 1.30642 0.86449 0.78079 0.78278 0.84658 1.19831 1.20974 1.20875 1.20439 0.88230 0.85179 0.77326 1.90653 1.13948 1.87285 1.49940 1.21909 0.99136 0.93236 1.03179 1.21928 0.96437 0.91956 0.98648 0.90202 1.22596 1.00526 0.95148 0.95760 1.23665 0.95963 0.96373 0.96740 0.88941 1.22597 0.95187 1.01096 0.96872 1.22747 0.97316 1.01746 0.94684 1.23623 0.95368 0.95213 0.97800 0.88680 1.23552 0.99127 0.97381 0.96047 0.93950 0.90933 0.92507 0.95194 0.93917 0.92812 0.89371 0.89779 0.91637 0.91935 0.92404 0.91893 0.90928 0.92368 0.91717 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.24 59.84 0.61 1.98 16 2 N -0.61 -13.17 2.86 -182.96 -0.52 -13.69 16 3 C 0.24 6.56 5.16 -5.19 -0.03 6.53 16 4 C -0.52 -15.17 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 8 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.50 10.54 7.38 -10.99 -0.08 10.46 16 13 O -0.54 -13.67 14.87 5.55 0.08 -13.59 16 14 C -0.13 -2.01 2.58 -27.88 -0.07 -2.08 16 15 C -0.07 -1.01 2.28 -88.19 -0.20 -1.21 16 16 H 0.08 1.31 7.85 -51.93 -0.41 0.91 16 17 C -0.10 -1.46 5.03 -24.19 -0.12 -1.58 16 18 C -0.11 -1.21 5.20 -85.18 -0.44 -1.65 16 19 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 20 C -0.12 -1.22 6.21 -24.33 -0.15 -1.37 16 21 C -0.13 -1.27 5.86 -24.34 -0.14 -1.41 16 22 C -0.10 -1.12 4.93 -85.32 -0.42 -1.54 16 23 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 24 C -0.12 -1.29 6.43 -22.43 -0.14 -1.43 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 27 H 0.06 0.75 6.45 -51.92 -0.33 0.41 16 28 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.04 1.29 7.42 -51.92 -0.39 0.90 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.09 1.15 6.16 -51.93 -0.32 0.83 16 32 H 0.08 1.13 7.41 -51.93 -0.38 0.75 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.97 7.28 -51.93 -0.38 0.59 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.67 7.85 -51.93 -0.41 0.26 16 37 H 0.07 0.73 5.44 -51.93 -0.28 0.44 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -32.74 311.24 -8.31 -41.05 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.67 Total: -2.15 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.61 Total: -7.15 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.21 Total: -40.00 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.74 -8.31 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.318 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds