Wall clock time and date at job start Mon Mar 30 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99509 * 2 1 4 4 C 1.50696 * 109.47327 * 270.00157 * 3 2 1 5 5 H 1.07998 * 120.00178 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99648 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00430 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99781 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47053 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47546 * 119.99558 * 8 6 4 11 11 H 1.48497 * 109.47013 * 239.99637 * 8 6 4 12 12 C 1.34771 * 120.00261 * 180.02562 * 2 1 3 13 13 O 1.21289 * 119.99960 * 179.97438 * 12 2 1 14 14 C 1.50695 * 120.00063 * 359.72180 * 12 2 1 15 15 C 1.53004 * 109.47319 * 180.27834 * 14 12 2 16 16 H 1.09005 * 110.35605 * 308.87276 * 15 14 12 17 17 C 1.54584 * 110.40217 * 71.19728 * 15 14 12 18 18 C 1.56188 * 104.51797 * 118.76277 * 17 15 14 19 19 H 1.08997 * 116.49010 * 160.44073 * 18 17 15 20 20 C 1.55930 * 104.56194 * 289.79448 * 18 17 15 21 21 C 1.54588 * 104.64217 * 70.28043 * 20 18 17 22 22 C 1.55920 * 104.64408 * 0.02562 * 21 20 18 23 23 H 1.09005 * 116.53284 * 160.39500 * 22 21 20 24 24 C 1.56953 * 100.65477 * 33.77688 * 22 21 20 25 25 H 1.08997 * 109.47272 * 269.99551 * 1 2 3 26 26 H 1.08999 * 109.47914 * 30.00186 * 1 2 3 27 27 H 1.09007 * 109.46951 * 149.99742 * 1 2 3 28 28 H 1.08996 * 109.47057 * 30.00477 * 3 2 1 29 29 H 1.09009 * 109.46764 * 150.00108 * 3 2 1 30 30 H 0.97001 * 120.00333 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47378 * 300.27666 * 14 12 2 32 32 H 1.08991 * 109.47517 * 60.27907 * 14 12 2 33 33 H 1.08999 * 110.40053 * 237.58799 * 17 15 14 34 34 H 1.09007 * 110.40053 * 359.97438 * 17 15 14 35 35 H 1.08992 * 110.40288 * 189.07113 * 20 18 17 36 36 H 1.09004 * 110.39950 * 311.37863 * 20 18 17 37 37 H 1.08996 * 110.39921 * 241.21068 * 21 20 18 38 38 H 1.08998 * 110.39899 * 118.79295 * 21 20 18 39 39 H 1.08998 * 112.02229 * 63.16982 * 24 22 21 40 40 H 1.08994 * 112.02732 * 189.69468 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0960 -2.2417 6 6 3.1266 2.8777 -1.6726 7 7 3.5539 3.6178 -0.6730 8 14 3.4373 3.4175 -3.4337 9 1 2.8595 2.4175 -4.3672 10 1 2.8002 4.7385 -3.6664 11 1 4.8998 3.5253 -3.6677 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4722 0.0052 15 6 2.3798 -3.6351 0.0104 16 1 3.1137 -3.5100 -0.7859 17 6 3.0849 -3.7352 1.3824 18 6 2.6909 -5.1465 1.9231 19 1 3.3244 -5.5610 2.7072 20 6 1.1742 -5.0261 2.2646 21 6 0.4713 -4.9241 0.8916 22 6 1.6294 -4.9932 -0.1502 23 1 1.3528 -5.2673 -1.1683 24 6 2.6223 -5.9623 0.5836 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3635 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6083 2.0284 0.5139 29 1 3.1499 1.1385 0.5139 30 1 4.0307 4.4438 -0.8502 31 1 0.7588 -2.5261 0.8955 32 1 0.7589 -2.5340 -0.8844 33 1 4.1655 -3.6613 1.2605 34 1 2.7235 -2.9556 2.0531 35 1 0.8339 -5.9119 2.8008 36 1 0.9880 -4.1297 2.8563 37 1 -0.0607 -3.9766 0.8066 38 1 -0.2145 -5.7598 0.7528 39 1 2.1930 -6.9534 0.7298 40 1 3.5901 -6.0106 0.0845 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:27 Heat of formation + Delta-G solvation = -62.047624 kcal Electronic energy + Delta-G solvation = -19135.697582 eV Core-core repulsion = 16334.985507 eV Total energy + Delta-G solvation = -2800.712075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.62345 -40.05076 -36.56425 -34.76397 -33.07050 -30.77521 -29.99359 -29.20704 -27.42436 -26.63017 -24.49976 -22.58336 -20.83349 -20.16148 -19.04960 -18.70611 -17.89886 -17.22386 -17.04341 -16.28755 -16.22532 -15.83232 -15.03254 -14.44993 -14.21667 -13.91520 -13.50472 -13.44599 -13.37115 -13.18766 -12.94669 -12.79185 -12.57777 -12.33627 -12.22755 -12.18574 -12.07477 -11.78218 -11.69637 -11.57475 -11.37115 -11.06558 -10.70625 -10.66895 -10.46998 -9.39429 -8.24162 -6.39577 1.34396 1.37069 1.49030 1.90298 2.32582 2.49198 3.04891 3.53846 3.61063 3.65339 3.95119 4.15964 4.20687 4.37655 4.40330 4.48460 4.56040 4.61277 4.66624 4.70166 4.70922 4.80953 4.91700 4.95328 5.01599 5.02965 5.13912 5.21009 5.26058 5.28964 5.33278 5.39743 5.44771 5.50653 5.55705 5.62917 5.85140 6.04990 6.68825 6.82952 7.27257 7.53936 8.83060 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.004919 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.650569 B = 5690.605081 C = 5818.462157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.489 3.511 13 O -0.597 6.597 14 C -0.117 4.117 15 C -0.075 4.075 16 H 0.046 0.954 17 C -0.106 4.106 18 C -0.106 4.106 19 H 0.101 0.899 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.093 4.093 23 H 0.111 0.889 24 C -0.121 4.121 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.021 0.979 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 -18.920 3.187 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.347 5.347 3 C 0.137 3.863 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.279 3.721 13 O -0.478 6.478 14 C -0.156 4.156 15 C -0.094 4.094 16 H 0.065 0.935 17 C -0.144 4.144 18 C -0.124 4.124 19 H 0.119 0.881 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.111 4.111 23 H 0.129 0.871 24 C -0.158 4.158 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.039 0.961 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.554 -18.718 3.246 21.265 hybrid contribution 0.851 1.188 -0.657 1.602 sum -8.703 -17.530 2.589 19.742 Atomic orbital electron populations 1.21923 0.77969 1.04000 1.02472 1.48241 1.08393 1.06471 1.71607 1.18724 0.90975 0.80658 0.95987 1.21731 1.36775 1.06520 0.93003 0.92963 1.25898 0.94853 0.96407 1.02141 1.70062 1.38998 1.14840 1.33075 0.85335 0.77885 0.78451 0.78928 1.19094 1.19207 1.20753 1.21613 0.88019 0.86795 0.75675 1.90623 1.16754 1.88200 1.52240 1.21916 0.98900 0.89283 1.05541 1.21940 0.96160 0.93986 0.97316 0.93494 1.22572 0.98763 0.97078 0.96011 1.23688 0.97174 0.94040 0.97501 0.88054 1.22611 0.93924 1.01751 0.97364 1.22763 0.96943 1.02883 0.93596 1.23649 0.95652 0.92565 0.99228 0.87120 1.23561 0.98820 0.98255 0.95145 0.91280 0.91724 0.88639 0.96082 0.98781 0.92383 0.86608 0.87164 0.94538 0.93838 0.90427 0.92584 0.90672 0.90088 0.89339 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.24 127.77 1.31 3.69 16 2 N -0.62 -27.07 2.86 -851.14 -2.43 -29.50 16 3 C 0.26 14.50 5.16 85.63 0.44 14.94 16 4 C -0.54 -32.22 9.39 25.60 0.24 -31.98 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.34 5.46 84.66 0.46 0.80 16 7 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 8 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 C 0.49 21.02 7.38 87.66 0.65 21.66 16 13 O -0.60 -32.07 14.87 -3.06 -0.05 -32.11 16 14 C -0.12 -3.32 2.58 29.85 0.08 -3.24 16 15 C -0.07 -2.10 2.28 -9.22 -0.02 -2.12 16 16 H 0.05 1.61 7.85 -2.38 -0.02 1.59 16 17 C -0.11 -3.11 5.03 32.24 0.16 -2.95 16 18 C -0.11 -2.18 5.20 -7.27 -0.04 -2.22 16 19 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 20 C -0.12 -2.03 6.21 32.15 0.20 -1.83 16 21 C -0.12 -1.95 5.86 32.15 0.19 -1.76 16 22 C -0.09 -1.77 4.93 -7.36 -0.04 -1.81 16 23 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 24 C -0.12 -2.22 6.43 33.38 0.21 -2.01 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 27 H 0.10 2.16 6.45 -2.38 -0.02 2.14 16 28 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 29 H -0.01 -0.39 7.42 -2.38 -0.02 -0.40 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.12 2.68 6.16 -2.39 -0.01 2.67 16 32 H 0.11 2.59 7.41 -2.39 -0.02 2.57 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.40 7.28 -2.38 -0.02 1.38 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.04 7.85 -2.38 -0.02 1.02 16 37 H 0.07 1.15 5.44 -2.39 -0.01 1.13 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -75.66 311.24 4.68 -70.98 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.00 Total: 8.91 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 3.85 Total: -8.82 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.15 Total: -86.84 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.11 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.66 4.68 -70.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.929 kcal (2) G-P(sol) polarization free energy of solvation -75.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds