Wall clock time and date at job start Mon Mar 30 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46700 * 2 1 4 4 N 1.46901 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.46905 * 110.99870 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47224 * 325.00460 * 5 4 3 7 7 C 1.53002 * 109.47102 * 85.00132 * 5 4 3 8 8 C 1.50702 * 109.47206 * 205.00135 * 5 4 3 9 9 C 1.39870 * 126.03480 * 339.69325 * 8 5 4 10 10 N 1.30847 * 108.19729 * 179.81771 * 9 8 5 11 11 N 1.40081 * 108.20438 * 0.43889 * 10 9 8 12 12 C 1.46499 * 126.03836 * 179.69963 * 11 10 9 13 13 C 1.50692 * 109.47078 * 270.02424 * 12 11 10 14 14 H 1.08004 * 120.00518 * 359.97438 * 13 12 11 15 15 C 1.37888 * 120.00236 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00103 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 119.99751 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47070 * 89.99989 * 17 15 13 19 19 H 1.48504 * 109.47310 * 210.00283 * 17 15 13 20 20 H 1.48503 * 109.47349 * 330.00513 * 17 15 13 21 21 C 1.34947 * 107.92777 * 359.71667 * 11 10 9 22 22 C 1.50700 * 126.12784 * 180.02562 * 21 11 10 23 23 H 1.08993 * 109.47740 * 299.99810 * 1 2 3 24 24 H 1.09005 * 109.47573 * 59.99976 * 1 2 3 25 25 H 1.09001 * 109.47128 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47485 * 240.00656 * 2 1 3 27 27 H 1.08996 * 109.47010 * 119.99449 * 2 1 3 28 28 H 1.09004 * 109.46889 * 60.00145 * 3 2 1 29 29 H 1.08995 * 109.47384 * 299.99786 * 3 2 1 30 30 H 1.00901 * 111.00067 * 303.95263 * 4 3 2 31 31 H 1.09000 * 109.46959 * 59.99562 * 7 5 4 32 32 H 1.08999 * 109.47105 * 180.02562 * 7 5 4 33 33 H 1.08996 * 109.46950 * 299.99914 * 7 5 4 34 34 H 1.07997 * 125.90538 * 359.97438 * 9 8 5 35 35 H 1.09004 * 109.47211 * 30.02110 * 12 11 10 36 36 H 1.08999 * 109.47670 * 150.01972 * 12 11 10 37 37 H 0.96997 * 119.99468 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47134 * 269.97269 * 22 21 11 39 39 H 1.08994 * 109.47409 * 29.97756 * 22 21 11 40 40 H 1.08999 * 109.47079 * 149.97737 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0353 2.8141 0.0013 6 1 3.3797 3.4552 -0.5882 7 6 4.1001 3.3349 1.4385 8 6 5.4177 2.8219 -0.5987 9 6 6.2682 1.7182 -0.7202 10 7 7.3753 2.1164 -1.2926 11 7 7.2681 3.4902 -1.5445 12 6 8.2895 4.3342 -2.1694 13 6 9.1930 4.9008 -1.1048 14 1 9.0232 4.6571 -0.0664 15 6 10.2367 5.7306 -1.4562 16 7 11.0256 6.2247 -0.5271 17 14 10.5311 6.1517 -3.2521 18 1 9.7666 7.3748 -3.6054 19 1 11.9797 6.3922 -3.4732 20 1 10.0807 5.0229 -4.1055 21 6 6.0578 3.8991 -1.1096 22 6 5.5159 5.3035 -1.1808 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.8702 0.9166 0.7822 31 1 4.7555 2.6938 2.0280 32 1 4.4902 4.3527 1.4389 33 1 3.1002 3.3293 1.8723 34 1 6.0480 0.7106 -0.3995 35 1 8.8784 3.7368 -2.8655 36 1 7.8073 5.1497 -2.7084 37 1 11.7600 6.8081 -0.7744 38 1 5.7852 5.8432 -0.2729 39 1 5.9400 5.8132 -2.0458 40 1 4.4305 5.2698 -1.2750 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040932873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:27 Heat of formation + Delta-G solvation = 56.160039 kcal Electronic energy + Delta-G solvation = -18421.255249 eV Core-core repulsion = 15657.961795 eV Total energy + Delta-G solvation = -2763.293454 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53945 -37.26681 -34.16375 -33.43390 -32.01130 -31.13016 -29.15154 -27.26233 -26.34691 -25.03698 -22.83083 -22.08162 -21.44597 -19.40157 -18.51694 -17.10413 -16.01672 -15.69549 -15.12621 -14.63490 -14.29060 -14.03547 -13.77351 -13.39839 -13.32105 -12.76220 -12.56912 -12.52467 -12.25978 -12.07831 -12.01661 -11.86489 -11.62446 -11.36016 -11.20984 -11.04348 -10.91126 -10.80941 -10.60691 -10.24510 -9.71363 -9.67033 -8.77721 -8.34763 -8.25369 -7.45139 -6.25898 -4.28537 2.77384 3.14479 3.22739 3.24500 3.52670 3.58014 4.22178 4.22537 4.83341 4.93851 5.02265 5.18359 5.22402 5.38733 5.40559 5.43056 5.53065 5.60451 5.63497 5.66790 5.72871 5.84352 5.90567 5.98980 6.04885 6.11210 6.20349 6.27151 6.30378 6.33786 6.55486 6.74868 6.92281 7.23233 7.30973 7.49631 7.50454 7.91072 8.33211 8.66622 8.79593 9.29865 10.86724 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.045316 B = 0.004247 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.730299 B = 6591.704466 C = 6682.418686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.059 3.941 4 N -0.681 5.681 5 C 0.174 3.826 6 H 0.073 0.927 7 C -0.175 4.175 8 C -0.252 4.252 9 C 0.049 3.951 10 N -0.302 5.302 11 N -0.326 5.326 12 C 0.230 3.770 13 C -0.539 4.539 14 H 0.080 0.920 15 C 0.078 3.922 16 N -0.888 5.888 17 Si 0.873 3.127 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 C 0.090 3.910 22 C -0.086 4.086 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.339 0.661 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.169 0.831 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.268 0.732 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.566 -6.275 0.648 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.070 4.070 4 N -0.311 5.311 5 C 0.064 3.936 6 H 0.091 0.909 7 C -0.235 4.235 8 C -0.265 4.265 9 C -0.136 4.136 10 N -0.124 5.124 11 N -0.106 5.106 12 C 0.110 3.890 13 C -0.577 4.577 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.525 5.525 17 Si 0.699 3.301 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.188 1.188 21 C -0.041 4.041 22 C -0.144 4.144 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.187 0.813 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.049 -6.494 -0.524 18.251 hybrid contribution -0.534 0.833 0.445 1.085 sum -17.583 -5.660 -0.079 18.472 Atomic orbital electron populations 1.21729 0.95866 1.01561 1.01695 1.21506 0.95283 0.96753 1.02569 1.21998 0.88201 0.96597 1.00205 1.60469 1.06476 1.14255 1.49935 1.19514 0.91947 0.88420 0.93754 0.90936 1.22479 1.00568 1.02672 0.97733 1.19338 0.98552 0.92905 1.15712 1.23324 0.91078 0.99107 1.00091 1.77335 1.22170 0.91147 1.21710 1.48812 1.11826 1.05862 1.44143 1.19935 0.85909 0.88635 0.94477 1.21171 1.12435 1.29498 0.94598 0.90201 1.24816 0.95111 0.95056 0.97599 1.69875 1.17388 1.32260 1.32953 0.86899 0.78447 0.79522 0.85274 1.19672 1.20489 1.18777 1.20631 0.87688 0.96283 0.99544 1.20352 0.99979 0.90659 1.03432 0.92969 0.92701 0.92730 0.91089 0.92266 0.95609 0.91268 0.84304 0.92426 0.91822 0.93508 0.81343 0.93310 0.94076 0.92148 0.90312 0.91249 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.05 6.19 -26.73 -0.17 -1.21 16 3 C 0.06 0.58 5.48 -3.82 -0.02 0.56 16 4 N -0.68 -8.08 5.69 -107.94 -0.61 -8.69 16 5 C 0.17 2.35 2.72 -68.86 -0.19 2.17 16 6 H 0.07 0.95 7.15 -51.93 -0.37 0.58 16 7 C -0.18 -2.18 9.14 37.16 0.34 -1.84 16 8 C -0.25 -4.46 5.24 -105.05 -0.55 -5.01 16 9 C 0.05 0.93 11.39 -17.36 -0.20 0.73 16 10 N -0.30 -6.94 12.58 30.63 0.39 -6.56 16 11 N -0.33 -7.55 3.60 -58.32 -0.21 -7.76 16 12 C 0.23 5.61 5.07 -5.20 -0.03 5.59 16 13 C -0.54 -15.23 9.94 -34.44 -0.34 -15.57 16 14 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 15 C 0.08 2.20 5.47 -17.81 -0.10 2.10 16 16 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 17 Si 0.87 20.36 27.47 -169.99 -4.67 15.69 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 21 C 0.09 1.76 6.93 -82.26 -0.57 1.19 16 22 C -0.09 -1.37 9.90 36.01 0.36 -1.02 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.24 7.43 -51.93 -0.39 -0.14 16 29 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 30 H 0.34 3.74 8.47 -39.29 -0.33 3.41 16 31 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.49 7.45 -51.93 -0.39 0.11 16 34 H 0.17 2.70 7.99 -52.49 -0.42 2.29 16 35 H 0.05 1.21 7.20 -51.93 -0.37 0.84 16 36 H 0.04 0.93 6.48 -51.93 -0.34 0.59 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.11 7.08 -51.93 -0.37 0.74 16 40 H 0.07 0.91 7.38 -51.93 -0.38 0.53 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -31.11 327.61 -7.24 -38.35 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.75 Total: 2.82 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -1.09 Total: -13.02 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.33 Total: -48.77 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.11 -7.24 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040932873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.507 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds