Wall clock time and date at job start Mon Mar 30 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46700 * 2 1 4 4 N 1.46901 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.46905 * 110.99870 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47224 * 325.00460 * 5 4 3 7 7 C 1.53002 * 109.47102 * 85.00132 * 5 4 3 8 8 C 1.50702 * 109.47206 * 205.00135 * 5 4 3 9 9 C 1.39870 * 126.03480 * 339.69325 * 8 5 4 10 10 N 1.30847 * 108.19729 * 179.81771 * 9 8 5 11 11 N 1.40081 * 108.20438 * 0.43889 * 10 9 8 12 12 C 1.46499 * 126.03836 * 179.69963 * 11 10 9 13 13 C 1.50692 * 109.47078 * 270.02424 * 12 11 10 14 14 H 1.08004 * 120.00518 * 359.97438 * 13 12 11 15 15 C 1.37888 * 120.00236 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00103 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 119.99751 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47070 * 89.99989 * 17 15 13 19 19 H 1.48504 * 109.47310 * 210.00283 * 17 15 13 20 20 H 1.48503 * 109.47349 * 330.00513 * 17 15 13 21 21 C 1.34947 * 107.92777 * 359.71667 * 11 10 9 22 22 C 1.50700 * 126.12784 * 180.02562 * 21 11 10 23 23 H 1.08993 * 109.47740 * 299.99810 * 1 2 3 24 24 H 1.09005 * 109.47573 * 59.99976 * 1 2 3 25 25 H 1.09001 * 109.47128 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47485 * 240.00656 * 2 1 3 27 27 H 1.08996 * 109.47010 * 119.99449 * 2 1 3 28 28 H 1.09004 * 109.46889 * 60.00145 * 3 2 1 29 29 H 1.08995 * 109.47384 * 299.99786 * 3 2 1 30 30 H 1.00901 * 111.00067 * 303.95263 * 4 3 2 31 31 H 1.09000 * 109.46959 * 59.99562 * 7 5 4 32 32 H 1.08999 * 109.47105 * 180.02562 * 7 5 4 33 33 H 1.08996 * 109.46950 * 299.99914 * 7 5 4 34 34 H 1.07997 * 125.90538 * 359.97438 * 9 8 5 35 35 H 1.09004 * 109.47211 * 30.02110 * 12 11 10 36 36 H 1.08999 * 109.47670 * 150.01972 * 12 11 10 37 37 H 0.96997 * 119.99468 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47134 * 269.97269 * 22 21 11 39 39 H 1.08994 * 109.47409 * 29.97756 * 22 21 11 40 40 H 1.08999 * 109.47079 * 149.97737 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0353 2.8141 0.0013 6 1 3.3797 3.4552 -0.5882 7 6 4.1001 3.3349 1.4385 8 6 5.4177 2.8219 -0.5987 9 6 6.2682 1.7182 -0.7202 10 7 7.3753 2.1164 -1.2926 11 7 7.2681 3.4902 -1.5445 12 6 8.2895 4.3342 -2.1694 13 6 9.1930 4.9008 -1.1048 14 1 9.0232 4.6571 -0.0664 15 6 10.2367 5.7306 -1.4562 16 7 11.0256 6.2247 -0.5271 17 14 10.5311 6.1517 -3.2521 18 1 9.7666 7.3748 -3.6054 19 1 11.9797 6.3922 -3.4732 20 1 10.0807 5.0229 -4.1055 21 6 6.0578 3.8991 -1.1096 22 6 5.5159 5.3035 -1.1808 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.8702 0.9166 0.7822 31 1 4.7555 2.6938 2.0280 32 1 4.4902 4.3527 1.4389 33 1 3.1002 3.3293 1.8723 34 1 6.0480 0.7106 -0.3995 35 1 8.8784 3.7368 -2.8655 36 1 7.8073 5.1497 -2.7084 37 1 11.7600 6.8081 -0.7744 38 1 5.7852 5.8432 -0.2729 39 1 5.9400 5.8132 -2.0458 40 1 4.4305 5.2698 -1.2750 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040932873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:26 Heat of formation + Delta-G solvation = 35.400423 kcal Electronic energy + Delta-G solvation = -18422.155454 eV Core-core repulsion = 15657.961795 eV Total energy + Delta-G solvation = -2764.193659 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.07122 -38.24160 -35.69671 -34.77296 -33.76918 -32.52867 -30.25683 -28.99846 -27.71355 -25.90410 -24.67481 -23.31769 -22.18429 -20.94489 -19.97951 -19.24376 -17.45393 -16.72753 -16.38856 -15.96769 -15.67017 -15.44537 -15.10855 -14.74963 -14.43301 -14.21681 -13.89346 -13.69923 -13.60163 -13.41442 -13.08734 -13.00023 -12.85444 -12.78723 -12.55341 -12.27031 -12.09172 -12.04329 -11.83786 -11.70371 -11.50517 -11.21207 -10.90827 -9.97469 -9.25357 -8.94376 -8.42530 -6.53044 1.20828 1.32039 1.34933 1.45435 1.95147 2.07322 2.24879 2.89630 3.29202 3.92439 4.01115 4.15993 4.25972 4.33504 4.36304 4.42493 4.47239 4.49127 4.59830 4.69926 4.73464 4.76795 4.87490 4.90394 4.99218 5.02967 5.07574 5.21763 5.23803 5.26691 5.35263 5.39413 5.47120 5.51291 5.92204 6.05994 6.26693 6.44389 6.52405 6.61130 7.08646 7.11814 8.74257 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.045316 B = 0.004247 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.730299 B = 6591.704466 C = 6682.418686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.062 3.938 4 N -0.689 5.689 5 C 0.181 3.819 6 H 0.084 0.916 7 C -0.169 4.169 8 C -0.243 4.243 9 C 0.053 3.947 10 N -0.353 5.353 11 N -0.356 5.356 12 C 0.241 3.759 13 C -0.548 4.548 14 H 0.023 0.977 15 C 0.021 3.979 16 N -0.938 5.938 17 Si 0.951 3.049 18 H -0.249 1.249 19 H -0.277 1.277 20 H -0.248 1.248 21 C 0.072 3.928 22 C -0.084 4.084 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.344 0.656 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.196 0.804 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.274 0.726 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.940 -6.208 -0.490 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.067 4.067 4 N -0.320 5.320 5 C 0.070 3.930 6 H 0.102 0.898 7 C -0.229 4.229 8 C -0.256 4.256 9 C -0.132 4.132 10 N -0.175 5.175 11 N -0.137 5.137 12 C 0.120 3.880 13 C -0.587 4.587 14 H 0.042 0.958 15 C -0.179 4.179 16 N -0.576 5.576 17 Si 0.771 3.229 18 H -0.173 1.173 19 H -0.202 1.202 20 H -0.172 1.172 21 C -0.057 4.057 22 C -0.142 4.142 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.212 0.788 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.467 -6.441 -1.645 20.570 hybrid contribution 0.132 0.712 0.951 1.195 sum -19.335 -5.729 -0.695 20.178 Atomic orbital electron populations 1.21708 0.94757 1.02121 1.02018 1.21466 0.96186 0.95839 1.02255 1.22029 0.86665 0.97494 1.00532 1.60401 1.07947 1.13204 1.50429 1.19479 0.89649 0.89769 0.94116 0.89806 1.22407 1.01786 1.01705 0.96956 1.19851 1.00086 0.91571 1.14043 1.23863 0.90259 1.00637 0.98399 1.77250 1.24441 0.91777 1.24077 1.48725 1.12787 1.05984 1.46240 1.19642 0.86034 0.89190 0.93133 1.21252 1.14062 1.30204 0.93137 0.95828 1.25840 0.94279 0.94438 1.03331 1.70033 1.18297 1.33294 1.35975 0.85680 0.78608 0.80356 0.78209 1.17290 1.20209 1.17210 1.21390 0.86747 0.98407 0.99167 1.20471 1.02150 0.88461 1.03121 0.92389 0.92633 0.92114 0.92134 0.91878 0.94576 0.91508 0.83780 0.93376 0.92796 0.91007 0.78777 0.94011 0.91658 0.91717 0.90763 0.91319 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.12 -1.75 6.19 30.59 0.19 -1.56 16 3 C 0.06 1.03 5.48 86.30 0.47 1.51 16 4 N -0.69 -14.65 5.69 -495.42 -2.82 -17.47 16 5 C 0.18 4.45 2.72 44.17 0.12 4.58 16 6 H 0.08 1.92 7.15 -2.39 -0.02 1.90 16 7 C -0.17 -3.84 9.14 71.98 0.66 -3.18 16 8 C -0.24 -8.32 5.24 -20.14 -0.11 -8.42 16 9 C 0.05 2.00 11.39 85.23 0.97 2.97 16 10 N -0.35 -16.57 12.58 -57.02 -0.72 -17.28 16 11 N -0.36 -16.71 3.60 -338.42 -1.22 -17.93 16 12 C 0.24 11.84 5.07 85.63 0.43 12.28 16 13 C -0.55 -32.15 9.94 25.60 0.25 -31.89 16 14 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 15 C 0.02 1.19 5.47 84.66 0.46 1.65 16 16 N -0.94 -57.74 13.96 21.45 0.30 -57.44 16 17 Si 0.95 41.77 27.47 68.60 1.88 43.65 16 18 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.25 -10.27 6.54 99.48 0.65 -9.61 16 21 C 0.07 2.81 6.93 41.41 0.29 3.10 16 22 C -0.08 -2.57 9.90 71.24 0.71 -1.86 16 23 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.05 0.65 8.14 -2.38 -0.02 0.64 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.04 0.55 7.43 -2.39 -0.02 0.53 16 29 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 30 H 0.34 6.78 8.47 -89.69 -0.76 6.02 16 31 H 0.05 1.17 8.13 -2.39 -0.02 1.16 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 34 H 0.20 6.02 7.99 -2.91 -0.02 6.00 16 35 H 0.04 2.09 7.20 -2.38 -0.02 2.07 16 36 H 0.07 2.87 6.48 -2.39 -0.02 2.85 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.07 2.09 7.08 -2.39 -0.02 2.07 16 40 H 0.11 2.44 7.38 -2.39 -0.02 2.42 16 Total: -1.00 -70.29 327.61 2.79 -67.50 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.19 Total: 20.87 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 5.16 Total: -21.90 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.45 Total: -110.12 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.65 kcal Total: -70.29 2.79 -67.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040932873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.903 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds