Wall clock time and date at job start Mon Mar 30 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 N 1.46906 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99910 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46763 * 180.02562 * 5 4 3 7 7 N 1.30496 * 125.65380 * 89.97884 * 6 5 4 8 8 C 1.34130 * 109.26014 * 180.02562 * 7 6 5 9 9 C 1.34674 * 108.01710 * 359.97438 * 8 7 6 10 10 N 1.35054 * 125.64688 * 270.28804 * 6 5 4 11 11 C 1.46496 * 126.39961 * 359.97438 * 10 6 5 12 12 C 1.53001 * 109.46973 * 85.14741 * 11 10 6 13 13 C 1.53004 * 109.46805 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46755 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99946 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99855 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00241 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 120.00075 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47072 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46894 * 120.00250 * 18 16 14 21 21 H 1.48504 * 109.46840 * 240.00147 * 18 16 14 22 22 H 1.08996 * 109.47401 * 300.00646 * 1 2 3 23 23 H 1.09005 * 109.46266 * 59.99985 * 1 2 3 24 24 H 1.08991 * 109.47202 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47401 * 239.99354 * 2 1 3 26 26 H 1.09003 * 109.47085 * 119.99606 * 2 1 3 27 27 H 1.08998 * 109.47588 * 59.99939 * 3 2 1 28 28 H 1.08996 * 109.47073 * 299.99576 * 3 2 1 29 29 H 1.00898 * 110.99653 * 303.95862 * 4 3 2 30 30 H 1.08996 * 109.47123 * 60.00255 * 5 4 3 31 31 H 1.09002 * 109.46871 * 299.99737 * 5 4 3 32 32 H 1.07997 * 125.98942 * 179.97438 * 8 7 6 33 33 H 1.08002 * 126.58669 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.47200 * 205.15089 * 11 10 6 35 35 H 1.09002 * 109.47024 * 325.14755 * 11 10 6 36 36 H 1.09006 * 109.46811 * 299.99901 * 12 11 10 37 37 H 1.08990 * 109.46920 * 59.99860 * 12 11 10 38 38 H 1.08996 * 109.46528 * 299.99531 * 13 12 11 39 39 H 1.09002 * 109.47416 * 59.99876 * 13 12 11 40 40 H 0.97001 * 120.00487 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0355 2.8139 0.0000 6 6 5.5420 2.7736 0.0000 7 7 6.3023 2.7524 -1.0603 8 6 7.5886 2.7178 -0.6817 9 6 7.6268 2.7180 0.6645 10 7 6.3286 2.7475 1.0975 11 6 5.8770 2.7537 2.4911 12 6 5.5649 1.3224 2.9324 13 6 5.0926 1.3290 4.3877 14 6 4.7857 -0.0809 4.8226 15 1 4.9142 -0.8996 4.1300 16 6 4.3409 -0.3255 6.1044 17 7 4.1840 0.6715 6.9475 18 14 3.9598 -2.0731 6.6433 19 1 4.2161 -3.0056 5.5164 20 1 4.8266 -2.4367 7.7930 21 1 2.5343 -2.1662 7.0491 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.8703 0.9164 0.7822 30 1 3.6857 3.3377 0.8895 31 1 3.6864 3.3367 -0.8905 32 1 8.4438 2.6938 -1.3409 33 1 8.5116 2.6942 1.2834 34 1 6.6615 3.1667 3.1254 35 1 4.9790 3.3652 2.5793 36 1 4.7804 0.9096 2.2981 37 1 6.4628 0.7110 2.8442 38 1 5.8768 1.7420 5.0222 39 1 4.1945 1.9404 4.4756 40 1 3.8714 0.4994 7.8495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051005063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:29 Heat of formation + Delta-G solvation = 34.855124 kcal Electronic energy + Delta-G solvation = -18449.846450 eV Core-core repulsion = 15685.629145 eV Total energy + Delta-G solvation = -2764.217305 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.85261 -36.77845 -35.35657 -33.17356 -33.06429 -30.96704 -29.67721 -26.98032 -26.22726 -23.71842 -23.52490 -21.40963 -21.10944 -20.67305 -19.28607 -17.05688 -16.17342 -16.05532 -15.36323 -14.80234 -14.75062 -14.55049 -14.10334 -13.93117 -13.34856 -13.31406 -12.87114 -12.54493 -12.16975 -12.05313 -12.01772 -11.71547 -11.54588 -11.06514 -11.00415 -10.93101 -10.69319 -10.65991 -10.04024 -9.86570 -9.65829 -9.38780 -9.06045 -8.50915 -8.42273 -8.13623 -6.14622 -4.17955 2.26207 3.06585 3.22653 3.31003 3.32929 3.35244 4.30257 4.35502 4.61197 4.95768 5.00213 5.02154 5.12897 5.22226 5.33269 5.37338 5.45751 5.57703 5.59861 5.65291 5.69376 5.71779 5.82155 5.97789 6.06287 6.16406 6.23995 6.31550 6.42864 6.59890 6.73514 6.98501 7.00785 7.39507 7.44813 7.47499 7.54734 7.82826 8.23434 8.36656 8.88311 9.47663 10.96558 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.006564 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.141136 B = 4264.610859 C = 5899.661871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 N -0.685 5.685 5 C 0.148 3.852 6 C 0.204 3.796 7 N -0.482 5.482 8 C -0.039 4.039 9 C -0.053 4.053 10 N -0.444 5.444 11 C 0.095 3.905 12 C -0.121 4.121 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.347 0.653 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 4.152 -11.342 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.069 4.069 4 N -0.320 5.320 5 C 0.018 3.982 6 C -0.059 4.059 7 N -0.201 5.201 8 C -0.188 4.188 9 C -0.187 4.187 10 N -0.126 5.126 11 C -0.026 4.026 12 C -0.159 4.159 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.183 0.817 33 H 0.188 0.812 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.414 4.140 -12.491 13.235 hybrid contribution 0.108 -0.693 2.301 2.406 sum -1.306 3.447 -10.190 10.837 Atomic orbital electron populations 1.21711 0.95603 1.01733 1.01652 1.21507 0.95520 0.96296 1.02983 1.21999 0.86925 0.97469 1.00535 1.60534 1.07630 1.12766 1.51028 1.20101 0.84993 0.91123 1.02018 1.22902 0.94778 1.06613 0.81601 1.70167 1.02007 1.19472 1.28451 1.22214 0.94788 1.09111 0.92704 1.22717 0.87366 1.11861 0.96800 1.45700 1.06376 1.52413 1.08081 1.22296 1.01281 1.01325 0.77728 1.22088 1.01050 0.91877 1.00908 1.19053 0.96459 0.97780 0.87953 1.21185 1.44692 0.92863 0.97353 0.92509 1.25003 0.95401 0.97149 0.96689 1.69953 1.46526 1.30838 1.05984 0.86532 0.78051 0.84731 0.78731 1.19630 1.20895 1.20886 0.92676 0.92872 0.92593 0.91201 0.91563 0.94920 0.91014 0.83180 0.93698 0.88361 0.81723 0.81201 0.89074 0.89632 0.92849 0.92277 0.96239 0.96389 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.13 -1.51 6.19 -26.73 -0.17 -1.68 16 3 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 4 N -0.69 -9.97 6.49 -115.06 -0.75 -10.72 16 5 C 0.15 2.09 5.99 -4.98 -0.03 2.06 16 6 C 0.20 3.30 7.42 -155.41 -1.15 2.15 16 7 N -0.48 -8.35 11.25 -10.81 -0.12 -8.47 16 8 C -0.04 -0.59 11.87 -17.81 -0.21 -0.80 16 9 C -0.05 -0.76 11.58 -16.56 -0.19 -0.95 16 10 N -0.44 -6.92 2.75 -113.90 -0.31 -7.23 16 11 C 0.10 1.48 5.89 -4.04 -0.02 1.45 16 12 C -0.12 -2.27 5.48 -26.73 -0.15 -2.42 16 13 C 0.03 0.59 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 18 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.35 5.54 6.34 -39.29 -0.25 5.29 16 30 H 0.05 0.59 7.18 -51.93 -0.37 0.22 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.26 7.21 -51.93 -0.37 0.88 16 36 H 0.05 1.00 5.76 -51.93 -0.30 0.70 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -30.15 330.54 -9.36 -39.51 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.76 Total: 3.93 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.12 Total: -12.98 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.45 Total: -51.41 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.15 -9.36 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051005063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.367 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds