Wall clock time and date at job start Mon Mar 30 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 N 1.46906 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99910 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46763 * 180.02562 * 5 4 3 7 7 N 1.30496 * 125.65380 * 89.97884 * 6 5 4 8 8 C 1.34130 * 109.26014 * 180.02562 * 7 6 5 9 9 C 1.34674 * 108.01710 * 359.97438 * 8 7 6 10 10 N 1.35054 * 125.64688 * 270.28804 * 6 5 4 11 11 C 1.46496 * 126.39961 * 359.97438 * 10 6 5 12 12 C 1.53001 * 109.46973 * 85.14741 * 11 10 6 13 13 C 1.53004 * 109.46805 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46755 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99946 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99855 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00241 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 120.00075 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47072 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46894 * 120.00250 * 18 16 14 21 21 H 1.48504 * 109.46840 * 240.00147 * 18 16 14 22 22 H 1.08996 * 109.47401 * 300.00646 * 1 2 3 23 23 H 1.09005 * 109.46266 * 59.99985 * 1 2 3 24 24 H 1.08991 * 109.47202 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47401 * 239.99354 * 2 1 3 26 26 H 1.09003 * 109.47085 * 119.99606 * 2 1 3 27 27 H 1.08998 * 109.47588 * 59.99939 * 3 2 1 28 28 H 1.08996 * 109.47073 * 299.99576 * 3 2 1 29 29 H 1.00898 * 110.99653 * 303.95862 * 4 3 2 30 30 H 1.08996 * 109.47123 * 60.00255 * 5 4 3 31 31 H 1.09002 * 109.46871 * 299.99737 * 5 4 3 32 32 H 1.07997 * 125.98942 * 179.97438 * 8 7 6 33 33 H 1.08002 * 126.58669 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.47200 * 205.15089 * 11 10 6 35 35 H 1.09002 * 109.47024 * 325.14755 * 11 10 6 36 36 H 1.09006 * 109.46811 * 299.99901 * 12 11 10 37 37 H 1.08990 * 109.46920 * 59.99860 * 12 11 10 38 38 H 1.08996 * 109.46528 * 299.99531 * 13 12 11 39 39 H 1.09002 * 109.47416 * 59.99876 * 13 12 11 40 40 H 0.97001 * 120.00487 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0355 2.8139 0.0000 6 6 5.5420 2.7736 0.0000 7 7 6.3023 2.7524 -1.0603 8 6 7.5886 2.7178 -0.6817 9 6 7.6268 2.7180 0.6645 10 7 6.3286 2.7475 1.0975 11 6 5.8770 2.7537 2.4911 12 6 5.5649 1.3224 2.9324 13 6 5.0926 1.3290 4.3877 14 6 4.7857 -0.0809 4.8226 15 1 4.9142 -0.8996 4.1300 16 6 4.3409 -0.3255 6.1044 17 7 4.1840 0.6715 6.9475 18 14 3.9598 -2.0731 6.6433 19 1 4.2161 -3.0056 5.5164 20 1 4.8266 -2.4367 7.7930 21 1 2.5343 -2.1662 7.0491 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.8703 0.9164 0.7822 30 1 3.6857 3.3377 0.8895 31 1 3.6864 3.3367 -0.8905 32 1 8.4438 2.6938 -1.3409 33 1 8.5116 2.6942 1.2834 34 1 6.6615 3.1667 3.1254 35 1 4.9790 3.3652 2.5793 36 1 4.7804 0.9096 2.2981 37 1 6.4628 0.7110 2.8442 38 1 5.8768 1.7420 5.0222 39 1 4.1945 1.9404 4.4756 40 1 3.8714 0.4994 7.8495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051005063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:28 Heat of formation + Delta-G solvation = 17.546085 kcal Electronic energy + Delta-G solvation = -18450.597026 eV Core-core repulsion = 15685.629145 eV Total energy + Delta-G solvation = -2764.967881 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.03407 -37.84345 -36.86947 -34.94020 -34.11476 -32.63481 -30.77637 -28.64111 -27.31851 -25.35064 -24.64611 -22.59324 -22.36005 -22.08850 -20.50361 -18.67951 -17.81149 -17.13789 -16.60458 -16.46196 -16.09280 -15.77231 -15.25961 -15.18659 -14.66442 -14.33695 -14.27538 -13.88171 -13.83784 -13.34494 -13.10638 -12.96325 -12.80138 -12.76275 -12.51012 -12.48800 -11.90200 -11.71164 -11.64961 -11.60653 -11.33940 -10.91112 -10.59422 -10.46267 -9.54040 -9.28030 -8.24308 -6.34180 1.08697 1.37175 1.39439 1.50902 1.87319 2.16111 2.38351 3.10330 3.21494 3.48021 3.73762 3.85953 4.04203 4.08157 4.15443 4.27483 4.37127 4.41240 4.52562 4.58764 4.66783 4.69087 4.79153 4.85302 4.86330 4.91207 5.03723 5.20681 5.29372 5.38849 5.40509 5.44614 5.62401 5.77748 5.88381 5.93882 6.16699 6.24678 6.28226 6.81301 7.18688 7.35512 8.87142 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.006564 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.141136 B = 4264.610859 C = 5899.661871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.061 3.939 4 N -0.694 5.694 5 C 0.149 3.851 6 C 0.191 3.809 7 N -0.511 5.511 8 C -0.052 4.052 9 C -0.054 4.054 10 N -0.449 5.449 11 C 0.106 3.894 12 C -0.104 4.104 13 C 0.031 3.969 14 C -0.541 4.541 15 H 0.055 0.945 16 C 0.007 3.993 17 N -0.928 5.928 18 Si 0.956 3.044 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.031 0.969 28 H 0.087 0.913 29 H 0.336 0.664 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.190 0.810 33 H 0.199 0.801 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 3.903 -11.941 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.068 4.068 4 N -0.328 5.328 5 C 0.019 3.981 6 C -0.071 4.071 7 N -0.231 5.231 8 C -0.200 4.200 9 C -0.188 4.188 10 N -0.130 5.130 11 C -0.015 4.015 12 C -0.142 4.142 13 C -0.007 4.007 14 C -0.579 4.579 15 H 0.073 0.927 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.781 3.219 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.203 1.203 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.105 0.895 29 H 0.156 0.844 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.207 0.793 33 H 0.216 0.784 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.372 3.894 -13.115 13.749 hybrid contribution 0.128 -0.602 2.448 2.524 sum -1.244 3.292 -10.667 11.232 Atomic orbital electron populations 1.21687 0.94056 1.02325 1.02249 1.21489 0.96858 0.95876 1.01904 1.22065 0.85790 0.97793 1.01139 1.60584 1.08781 1.12971 1.50424 1.20171 0.84128 0.91036 1.02794 1.23245 0.95564 1.06652 0.81647 1.70161 1.03221 1.20416 1.29259 1.22712 0.94817 1.08862 0.93564 1.23246 0.87704 1.10692 0.97126 1.45702 1.06899 1.52713 1.07715 1.22086 1.02341 0.99005 0.78114 1.21784 1.00436 0.94243 0.97773 1.18897 0.95191 0.95872 0.90691 1.21607 1.44374 0.94310 0.97581 0.92677 1.25824 0.95322 1.01076 0.96893 1.70056 1.47503 1.32884 1.06401 0.85535 0.77971 0.80039 0.78374 1.18990 1.20405 1.20329 0.92910 0.91416 0.92048 0.91388 0.93491 0.95080 0.89497 0.84430 0.92911 0.87484 0.79334 0.78447 0.87631 0.88764 0.92978 0.92932 0.97945 0.98005 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.91 71.98 0.71 -2.08 16 2 C -0.12 -2.91 6.19 30.60 0.19 -2.72 16 3 C 0.06 1.45 5.69 86.30 0.49 1.95 16 4 N -0.69 -19.79 6.49 -517.93 -3.36 -23.15 16 5 C 0.15 4.06 5.99 85.56 0.51 4.57 16 6 C 0.19 5.99 7.42 138.13 1.02 7.01 16 7 N -0.51 -17.10 11.25 -188.12 -2.12 -19.22 16 8 C -0.05 -1.46 11.87 83.52 0.99 -0.47 16 9 C -0.05 -1.44 11.58 83.09 0.96 -0.48 16 10 N -0.45 -13.28 2.75 -514.28 -1.41 -14.70 16 11 C 0.11 3.16 5.89 86.38 0.51 3.67 16 12 C -0.10 -3.86 5.48 30.60 0.17 -3.69 16 13 C 0.03 1.49 4.97 29.85 0.15 1.64 16 14 C -0.54 -29.14 9.11 25.60 0.23 -28.90 16 15 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 16 C 0.01 0.40 5.46 84.65 0.46 0.86 16 17 N -0.93 -53.76 13.29 21.44 0.28 -53.48 16 18 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 29 H 0.34 10.69 6.34 -89.70 -0.57 10.12 16 30 H 0.05 1.34 7.18 -2.39 -0.02 1.32 16 31 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.19 4.15 8.06 -2.91 -0.02 4.12 16 33 H 0.20 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.09 2.65 7.21 -2.39 -0.02 2.63 16 36 H 0.05 1.95 5.76 -2.38 -0.01 1.94 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -63.52 330.54 2.25 -61.26 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.43 Total: 23.04 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 6.40 Total: -18.65 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -6.61 Total: -110.55 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -63.52 2.25 -61.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051005063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.809 kcal (2) G-P(sol) polarization free energy of solvation -63.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds