Wall clock time and date at job start Mon Mar 30 2020 06:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46980 * 2 1 4 4 N 1.46494 * 109.47334 * 179.97438 * 3 2 1 5 5 C 1.34950 * 126.03741 * 124.99557 * 4 3 2 6 6 C 1.35318 * 107.74509 * 180.02562 * 5 4 3 7 7 C 1.50700 * 126.03877 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47269 * 89.99806 * 7 6 5 9 9 C 1.46907 * 111.00226 * 293.95308 * 8 7 6 10 10 C 1.46898 * 111.00206 * 169.99805 * 8 7 6 11 11 H 1.09001 * 109.47392 * 310.00582 * 10 8 7 12 12 C 1.53006 * 109.47006 * 70.00284 * 10 8 7 13 13 C 1.50699 * 109.47309 * 190.00013 * 10 8 7 14 14 H 1.07999 * 120.00019 * 0.02562 * 13 10 8 15 15 C 1.37879 * 119.99908 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99546 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 120.00061 * 359.97438 * 15 13 10 18 18 H 1.48496 * 109.47023 * 90.00536 * 17 15 13 19 19 H 1.48503 * 109.47041 * 210.00292 * 17 15 13 20 20 H 1.48500 * 109.47388 * 329.99951 * 17 15 13 21 21 C 1.39864 * 107.91962 * 0.26409 * 6 5 4 22 22 N 1.30833 * 108.20394 * 359.55855 * 21 6 5 23 23 H 1.09000 * 109.46985 * 60.00439 * 1 2 3 24 24 H 1.09007 * 109.46999 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47451 * 300.00101 * 1 2 3 26 26 H 1.08997 * 109.46858 * 240.00372 * 2 1 3 27 27 H 1.09000 * 109.46985 * 119.99561 * 2 1 3 28 28 H 1.08996 * 109.47111 * 59.99691 * 3 2 1 29 29 H 1.09004 * 109.46812 * 300.00129 * 3 2 1 30 30 H 1.08002 * 126.12636 * 0.02562 * 5 4 3 31 31 H 1.08998 * 109.47373 * 329.99768 * 7 6 5 32 32 H 1.08998 * 109.47000 * 209.99732 * 7 6 5 33 33 H 1.08998 * 109.46867 * 296.04967 * 9 8 7 34 34 H 1.08998 * 109.46750 * 56.04549 * 9 8 7 35 35 H 1.08994 * 109.46944 * 176.04203 * 9 8 7 36 36 H 1.09001 * 109.47002 * 299.99782 * 12 10 8 37 37 H 1.08993 * 109.46955 * 60.00219 * 12 10 8 38 38 H 1.09000 * 109.47050 * 180.02562 * 12 10 8 39 39 H 0.97005 * 119.99945 * 180.02562 * 16 15 13 40 40 H 1.08007 * 125.89729 * 179.73833 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2992 2.0684 -0.8931 6 6 5.5839 1.8244 -0.5449 7 6 6.8084 2.3287 -1.2641 8 7 7.2062 3.6266 -0.7030 9 6 6.1917 4.6527 -0.9788 10 6 8.5223 4.0381 -1.2094 11 1 9.2306 3.2183 -1.0890 12 6 8.4081 4.3996 -2.6918 13 6 9.0058 5.2375 -0.4357 14 1 8.3965 5.6524 0.3536 15 6 10.2260 5.8052 -0.7356 16 7 10.6481 6.8517 -0.0600 17 14 11.2801 5.0872 -2.1004 18 1 10.9380 5.7439 -3.3875 19 1 12.7142 5.3190 -1.7922 20 1 11.0263 3.6279 -2.2062 21 6 5.5744 1.0172 0.5972 22 7 4.3288 0.7926 0.9286 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9687 2.6582 -1.7353 31 1 6.5851 2.4445 -2.3247 32 1 7.6224 1.6144 -1.1402 33 1 6.1182 4.8109 -2.0548 34 1 5.2270 4.3226 -0.5934 35 1 6.4771 5.5856 -0.4929 36 1 8.0584 3.5320 -3.2514 37 1 7.6999 5.2193 -2.8123 38 1 9.3847 4.7045 -3.0677 39 1 11.5064 7.2514 -0.2712 40 1 6.4450 0.6459 1.1176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132283423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:17 Heat of formation + Delta-G solvation = 86.509833 kcal Electronic energy + Delta-G solvation = -18503.312322 eV Core-core repulsion = 15741.334933 eV Total energy + Delta-G solvation = -2761.977389 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02472 -37.35393 -35.48468 -32.79479 -31.56181 -30.82337 -28.95627 -27.25707 -25.64358 -25.19935 -23.14824 -22.36653 -20.56244 -19.93229 -19.09213 -16.82437 -16.51854 -15.71294 -15.34060 -14.71382 -14.43645 -14.16542 -13.97105 -13.45377 -13.26099 -13.07531 -12.62240 -12.45603 -12.29229 -12.17075 -11.98427 -11.68091 -11.39427 -11.20517 -11.13826 -10.96034 -10.80697 -10.25587 -10.18877 -9.96373 -9.49271 -9.18420 -9.01022 -8.54092 -8.14784 -7.19692 -6.01520 -3.98885 2.07815 2.62444 3.08094 3.28696 3.39185 3.41665 4.34606 4.43825 4.58312 4.80444 4.96143 5.01310 5.11160 5.16560 5.27957 5.32564 5.36772 5.54490 5.64230 5.72256 5.80253 5.94073 6.09848 6.11800 6.17932 6.27260 6.32902 6.34839 6.49585 6.59544 6.78303 6.90040 6.93753 7.19160 7.25708 7.70444 7.92187 8.03834 8.17585 8.73696 9.07666 9.61050 11.11870 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.051919 B = 0.004127 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.176411 B = 6783.199738 C = 6813.826704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.137 3.863 4 N -0.379 5.379 5 C 0.050 3.950 6 C -0.209 4.209 7 C 0.125 3.875 8 N -0.519 5.519 9 C 0.035 3.965 10 C 0.181 3.819 11 H 0.039 0.961 12 C -0.186 4.186 13 C -0.498 4.498 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.886 3.114 18 H -0.282 1.282 19 H -0.298 1.298 20 H -0.268 1.268 21 C 0.066 3.934 22 N -0.304 5.304 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.166 0.834 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.015 0.985 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.028 0.972 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.263 0.737 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.106 -11.925 -3.783 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.015 3.985 4 N -0.162 5.162 5 C -0.096 4.096 6 C -0.221 4.221 7 C -0.004 4.004 8 N -0.242 5.242 9 C -0.114 4.114 10 C 0.073 3.927 11 H 0.057 0.943 12 C -0.245 4.245 13 C -0.536 4.536 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.541 5.541 17 Si 0.717 3.283 18 H -0.209 1.209 19 H -0.225 1.225 20 H -0.193 1.193 21 C -0.120 4.120 22 N -0.125 5.125 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.183 0.817 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.862 -12.412 -2.415 21.885 hybrid contribution 1.158 0.393 -2.305 2.610 sum -16.704 -12.020 -4.720 21.113 Atomic orbital electron populations 1.21717 0.94694 1.02322 1.02063 1.21797 0.96093 0.95790 1.03680 1.21684 0.74769 0.98549 1.03453 1.48508 1.05895 1.40265 1.21543 1.22273 0.91079 0.99595 0.96625 1.20097 0.94138 1.06792 1.01078 1.20348 0.93096 0.92821 0.94142 1.62150 1.03078 1.00711 1.58213 1.22264 0.94403 0.96782 0.97928 1.19794 0.86668 0.97054 0.89201 0.94312 1.22830 1.00869 0.99802 1.01011 1.20959 1.03607 1.10860 1.18198 0.90087 1.24925 0.97380 0.94751 0.96277 1.69887 1.20845 1.22220 1.41131 0.86885 0.79031 0.80126 0.82236 1.20898 1.22527 1.19286 1.23773 0.94836 0.97625 0.95804 1.77249 1.01702 1.19948 1.13632 0.92506 0.92104 0.92315 0.91558 0.90426 0.90103 0.89068 0.81706 0.95332 0.90759 0.96640 0.93617 0.90696 0.95333 0.92477 0.93812 0.92726 0.80160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.14 -1.12 6.12 -26.73 -0.16 -1.29 16 3 C 0.14 1.26 6.51 -4.04 -0.03 1.23 16 4 N -0.38 -5.02 3.68 -61.37 -0.23 -5.24 16 5 C 0.05 0.68 9.88 -17.22 -0.17 0.51 16 6 C -0.21 -3.27 4.99 -105.05 -0.52 -3.80 16 7 C 0.13 2.14 5.02 -4.98 -0.02 2.12 16 8 N -0.52 -10.76 4.69 -237.73 -1.12 -11.88 16 9 C 0.03 0.67 8.58 60.07 0.52 1.18 16 10 C 0.18 4.26 1.90 -68.86 -0.13 4.13 16 11 H 0.04 0.95 6.99 -51.93 -0.36 0.58 16 12 C -0.19 -4.03 7.92 37.16 0.29 -3.74 16 13 C -0.50 -13.98 8.55 -34.44 -0.29 -14.28 16 14 H 0.08 2.50 7.35 -52.49 -0.39 2.12 16 15 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 16 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 17 Si 0.89 21.97 24.37 -169.99 -4.14 17.83 16 18 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 19 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 21 C 0.07 1.03 11.96 -17.37 -0.21 0.82 16 22 N -0.30 -4.71 12.42 30.62 0.38 -4.33 16 23 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 30 H 0.17 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.03 0.47 7.06 -51.93 -0.37 0.10 16 32 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.02 0.28 6.21 -51.93 -0.32 -0.05 16 34 H 0.05 0.78 6.10 -51.93 -0.32 0.47 16 35 H 0.07 1.62 6.86 -51.93 -0.36 1.26 16 36 H 0.03 0.53 6.91 -51.93 -0.36 0.17 16 37 H 0.06 1.21 6.33 -51.93 -0.33 0.88 16 38 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.18 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -32.00 312.77 -6.44 -38.44 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -6.36 Total: -0.80 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.46 Total: -11.79 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.19 Total: -48.39 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.00 -6.44 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132283423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.947 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds