Wall clock time and date at job start Mon Mar 30 2020 06:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46980 * 2 1 4 4 N 1.46494 * 109.47334 * 179.97438 * 3 2 1 5 5 C 1.34950 * 126.03741 * 124.99557 * 4 3 2 6 6 C 1.35318 * 107.74509 * 180.02562 * 5 4 3 7 7 C 1.50700 * 126.03877 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47269 * 89.99806 * 7 6 5 9 9 C 1.46907 * 111.00226 * 293.95308 * 8 7 6 10 10 C 1.46898 * 111.00206 * 169.99805 * 8 7 6 11 11 H 1.09001 * 109.47392 * 310.00582 * 10 8 7 12 12 C 1.53006 * 109.47006 * 70.00284 * 10 8 7 13 13 C 1.50699 * 109.47309 * 190.00013 * 10 8 7 14 14 H 1.07999 * 120.00019 * 0.02562 * 13 10 8 15 15 C 1.37879 * 119.99908 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99546 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 120.00061 * 359.97438 * 15 13 10 18 18 H 1.48496 * 109.47023 * 90.00536 * 17 15 13 19 19 H 1.48503 * 109.47041 * 210.00292 * 17 15 13 20 20 H 1.48500 * 109.47388 * 329.99951 * 17 15 13 21 21 C 1.39864 * 107.91962 * 0.26409 * 6 5 4 22 22 N 1.30833 * 108.20394 * 359.55855 * 21 6 5 23 23 H 1.09000 * 109.46985 * 60.00439 * 1 2 3 24 24 H 1.09007 * 109.46999 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47451 * 300.00101 * 1 2 3 26 26 H 1.08997 * 109.46858 * 240.00372 * 2 1 3 27 27 H 1.09000 * 109.46985 * 119.99561 * 2 1 3 28 28 H 1.08996 * 109.47111 * 59.99691 * 3 2 1 29 29 H 1.09004 * 109.46812 * 300.00129 * 3 2 1 30 30 H 1.08002 * 126.12636 * 0.02562 * 5 4 3 31 31 H 1.08998 * 109.47373 * 329.99768 * 7 6 5 32 32 H 1.08998 * 109.47000 * 209.99732 * 7 6 5 33 33 H 1.08998 * 109.46867 * 296.04967 * 9 8 7 34 34 H 1.08998 * 109.46750 * 56.04549 * 9 8 7 35 35 H 1.08994 * 109.46944 * 176.04203 * 9 8 7 36 36 H 1.09001 * 109.47002 * 299.99782 * 12 10 8 37 37 H 1.08993 * 109.46955 * 60.00219 * 12 10 8 38 38 H 1.09000 * 109.47050 * 180.02562 * 12 10 8 39 39 H 0.97005 * 119.99945 * 180.02562 * 16 15 13 40 40 H 1.08007 * 125.89729 * 179.73833 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2992 2.0684 -0.8931 6 6 5.5839 1.8244 -0.5449 7 6 6.8084 2.3287 -1.2641 8 7 7.2062 3.6266 -0.7030 9 6 6.1917 4.6527 -0.9788 10 6 8.5223 4.0381 -1.2094 11 1 9.2306 3.2183 -1.0890 12 6 8.4081 4.3996 -2.6918 13 6 9.0058 5.2375 -0.4357 14 1 8.3965 5.6524 0.3536 15 6 10.2260 5.8052 -0.7356 16 7 10.6481 6.8517 -0.0600 17 14 11.2801 5.0872 -2.1004 18 1 10.9380 5.7439 -3.3875 19 1 12.7142 5.3190 -1.7922 20 1 11.0263 3.6279 -2.2062 21 6 5.5744 1.0172 0.5972 22 7 4.3288 0.7926 0.9286 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9687 2.6582 -1.7353 31 1 6.5851 2.4445 -2.3247 32 1 7.6224 1.6144 -1.1402 33 1 6.1182 4.8109 -2.0548 34 1 5.2270 4.3226 -0.5934 35 1 6.4771 5.5856 -0.4929 36 1 8.0584 3.5320 -3.2514 37 1 7.6999 5.2193 -2.8123 38 1 9.3847 4.7045 -3.0677 39 1 11.5064 7.2514 -0.2712 40 1 6.4450 0.6459 1.1176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132283423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:17 Heat of formation + Delta-G solvation = 64.301905 kcal Electronic energy + Delta-G solvation = -18504.275330 eV Core-core repulsion = 15741.334933 eV Total energy + Delta-G solvation = -2762.940397 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.11039 -38.96929 -36.27309 -34.74597 -32.71540 -32.20359 -30.45935 -28.38354 -27.17142 -26.76269 -24.69158 -23.11570 -21.60384 -21.31466 -20.56004 -18.63093 -17.80053 -17.07147 -16.58336 -16.10400 -15.69925 -15.45379 -15.17990 -14.98917 -14.66175 -14.14411 -14.01043 -13.83329 -13.63764 -13.17558 -13.11945 -12.92518 -12.87982 -12.59328 -12.37088 -12.20847 -12.00384 -11.83671 -11.75398 -11.38744 -11.35000 -11.03481 -10.71558 -10.25450 -9.30473 -8.74928 -8.23214 -6.25356 1.01334 1.33059 1.39546 1.49632 1.70455 1.89776 2.36353 3.11548 3.51498 3.63816 3.93830 4.01068 4.12493 4.29022 4.30996 4.45696 4.49063 4.52959 4.57750 4.63564 4.71663 4.72504 4.82015 4.85334 4.96543 5.00207 5.05761 5.12134 5.19928 5.28252 5.30102 5.37279 5.50944 5.69867 5.76775 6.12510 6.22733 6.53238 6.80171 6.81631 6.83865 7.39535 8.94151 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.051919 B = 0.004127 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.176411 B = 6783.199738 C = 6813.826704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.126 3.874 4 N -0.375 5.375 5 C 0.063 3.937 6 C -0.235 4.235 7 C 0.133 3.867 8 N -0.540 5.540 9 C 0.044 3.956 10 C 0.184 3.816 11 H 0.034 0.966 12 C -0.180 4.180 13 C -0.499 4.499 14 H 0.033 0.967 15 C 0.008 3.992 16 N -0.954 5.954 17 Si 0.952 3.048 18 H -0.268 1.268 19 H -0.302 1.302 20 H -0.245 1.245 21 C 0.051 3.949 22 N -0.329 5.329 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.197 0.803 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.721 -13.333 -6.164 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.007 3.993 4 N -0.157 5.157 5 C -0.085 4.085 6 C -0.247 4.247 7 C 0.004 3.996 8 N -0.263 5.263 9 C -0.104 4.104 10 C 0.076 3.924 11 H 0.052 0.948 12 C -0.239 4.239 13 C -0.538 4.538 14 H 0.052 0.948 15 C -0.188 4.188 16 N -0.595 5.595 17 Si 0.779 3.221 18 H -0.194 1.194 19 H -0.230 1.230 20 H -0.169 1.169 21 C -0.134 4.134 22 N -0.151 5.151 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.141 0.859 30 H 0.214 0.786 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -19.523 -13.853 -4.790 24.413 hybrid contribution 1.502 0.830 -1.455 2.250 sum -18.021 -13.022 -6.246 23.094 Atomic orbital electron populations 1.21685 0.92713 1.02886 1.02961 1.21714 0.97679 0.94956 1.02324 1.22097 0.72537 0.99467 1.05241 1.48864 1.07220 1.39066 1.20594 1.22699 0.90438 0.98530 0.96784 1.20036 0.94536 1.08287 1.01807 1.20287 0.93793 0.90526 0.94970 1.62014 1.02324 1.02561 1.59406 1.22138 0.94771 0.94948 0.98565 1.19572 0.88182 0.94610 0.90064 0.94781 1.22687 1.00537 1.01262 0.99406 1.21220 1.03107 1.12152 1.17309 0.94825 1.25803 0.98919 0.95059 0.99041 1.70055 1.21613 1.24277 1.43553 0.85811 0.76486 0.80577 0.79182 1.19409 1.22973 1.16928 1.23967 0.95232 0.98035 0.96209 1.77208 1.01987 1.21029 1.14860 0.91064 0.91773 0.91935 0.92089 0.92618 0.89690 0.85886 0.78610 0.93646 0.90876 0.95016 0.91495 0.94408 0.91788 0.92564 0.94711 0.92705 0.79776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.13 -1.88 6.12 30.60 0.19 -1.69 16 3 C 0.13 1.97 6.51 86.38 0.56 2.53 16 4 N -0.38 -9.06 3.68 -348.07 -1.28 -10.34 16 5 C 0.06 1.51 9.88 83.54 0.83 2.34 16 6 C -0.23 -6.87 4.99 -20.14 -0.10 -6.98 16 7 C 0.13 4.22 5.02 85.56 0.43 4.65 16 8 N -0.54 -21.83 4.69 -906.05 -4.25 -26.08 16 9 C 0.04 1.64 8.58 127.69 1.10 2.74 16 10 C 0.18 8.49 1.90 44.17 0.08 8.57 16 11 H 0.03 1.61 6.99 -2.39 -0.02 1.59 16 12 C -0.18 -7.27 7.92 71.98 0.57 -6.70 16 13 C -0.50 -28.73 8.55 25.60 0.22 -28.51 16 14 H 0.03 2.19 7.35 -2.91 -0.02 2.17 16 15 C 0.01 0.47 5.45 84.65 0.46 0.93 16 16 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 17 Si 0.95 44.94 24.37 68.60 1.67 46.62 16 18 H -0.27 -11.98 6.87 99.48 0.68 -11.30 16 19 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 20 H -0.25 -10.62 6.53 99.48 0.65 -9.97 16 21 C 0.05 1.55 11.96 85.24 1.02 2.57 16 22 N -0.33 -9.90 12.42 -57.03 -0.71 -10.61 16 23 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.12 1.16 8.07 -2.39 -0.02 1.14 16 30 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.05 1.30 7.06 -2.39 -0.02 1.28 16 32 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 33 H 0.03 1.07 6.21 -2.39 -0.01 1.05 16 34 H 0.07 2.17 6.10 -2.39 -0.01 2.15 16 35 H 0.04 1.66 6.86 -2.39 -0.02 1.64 16 36 H 0.06 2.12 6.91 -2.39 -0.02 2.11 16 37 H 0.06 2.25 6.33 -2.39 -0.02 2.24 16 38 H 0.03 1.46 3.27 -2.39 -0.01 1.45 16 39 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 40 H 0.19 5.13 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -71.11 312.77 2.72 -68.39 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.93 Total: 12.42 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 6.07 Total: -20.20 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -5.94 Total: -107.22 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.67 Total: 46.62 kcal Total: -71.11 2.72 -68.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132283423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.691 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds