Wall clock time and date at job start Mon Mar 30 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47082 * 2 1 4 4 C 1.50696 * 109.47154 * 239.99650 * 2 1 3 5 5 C 1.39876 * 126.03983 * 286.17910 * 4 2 1 6 6 N 1.30841 * 108.20057 * 179.97438 * 5 4 2 7 7 N 1.40083 * 108.20773 * 359.97438 * 6 5 4 8 8 C 1.46501 * 126.04035 * 180.02562 * 7 6 5 9 9 C 1.34949 * 107.92493 * 359.76087 * 7 6 5 10 10 N 1.46905 * 109.46921 * 119.99887 * 2 1 3 11 11 C 1.46901 * 111.00114 * 302.99499 * 10 2 1 12 12 C 1.46905 * 110.99969 * 179.04363 * 10 2 1 13 13 C 1.52992 * 109.47134 * 190.00032 * 12 10 2 14 14 C 1.53001 * 109.46995 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47193 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99957 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00371 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00044 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00483 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47103 * 59.99780 * 19 17 15 21 21 H 1.48497 * 109.47369 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46652 * 300.00039 * 19 17 15 23 23 H 1.09004 * 109.47191 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46839 * 300.00055 * 1 2 3 25 25 H 1.08998 * 109.47045 * 60.00088 * 1 2 3 26 26 H 1.08000 * 125.90074 * 359.97438 * 5 4 2 27 27 H 1.08996 * 109.46639 * 89.97789 * 8 7 6 28 28 H 1.08995 * 109.47162 * 209.97625 * 8 7 6 29 29 H 1.08996 * 109.46993 * 329.98139 * 8 7 6 30 30 H 1.08001 * 126.12827 * 180.23374 * 9 7 6 31 31 H 1.09001 * 109.46957 * 302.15043 * 11 10 2 32 32 H 1.09004 * 109.46792 * 62.14000 * 11 10 2 33 33 H 1.09000 * 109.47310 * 182.14647 * 11 10 2 34 34 H 1.09004 * 109.46922 * 69.99754 * 12 10 2 35 35 H 1.09000 * 109.46726 * 310.00156 * 12 10 2 36 36 H 1.09004 * 109.47078 * 299.99334 * 13 12 10 37 37 H 1.08995 * 109.47648 * 59.99480 * 13 12 10 38 38 H 1.09003 * 109.46914 * 299.99273 * 14 13 12 39 39 H 1.08994 * 109.47366 * 59.99639 * 14 13 12 40 40 H 0.96997 * 120.00512 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.0096 -2.0917 -1.4501 6 7 2.5295 -2.3268 -2.6275 7 7 2.8996 -1.1009 -3.1953 8 6 3.5195 -0.9117 -4.5091 9 6 2.5790 -0.1244 -2.3208 10 7 2.0197 -0.6925 1.1995 11 6 1.4910 -0.0690 2.4201 12 6 3.4880 -0.7320 1.2221 13 6 3.9559 -1.6659 2.3399 14 6 5.4852 -1.7065 2.3638 15 6 5.9462 -2.6259 3.4653 16 1 5.2209 -3.1305 4.0865 17 6 7.2937 -2.8230 3.6801 18 7 8.1770 -2.2090 2.9234 19 14 7.8652 -3.9621 5.0459 20 1 7.3368 -5.3287 4.8042 21 1 9.3494 -4.0025 5.0683 22 1 7.3634 -3.4609 6.3507 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6286 -2.8355 -0.7660 27 1 2.7423 -0.7820 -5.2622 28 1 4.1552 -0.0265 -4.4869 29 1 4.1222 -1.7857 -4.7558 30 1 2.7337 0.9348 -2.4641 31 1 1.7775 0.9824 2.4443 32 1 0.4040 -0.1495 2.4276 33 1 1.8992 -0.5771 3.2937 34 1 3.8757 0.2711 1.4004 35 1 3.8563 -1.0989 0.2641 36 1 3.5876 -1.2989 3.2980 37 1 3.5682 -2.6688 2.1617 38 1 5.8539 -2.0732 1.4059 39 1 5.8726 -0.7034 2.5424 40 1 9.1250 -2.3473 3.0747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180371241.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:47 Heat of formation + Delta-G solvation = 73.085290 kcal Electronic energy + Delta-G solvation = -18506.546113 eV Core-core repulsion = 15743.986593 eV Total energy + Delta-G solvation = -2762.559521 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14034 -37.79483 -34.04562 -33.08944 -32.02281 -30.53964 -29.03702 -27.33705 -26.14346 -25.22540 -22.67828 -21.49995 -20.86874 -19.77765 -19.39398 -16.79211 -16.19115 -15.64047 -15.23011 -14.88638 -14.37094 -14.16463 -14.12799 -13.86967 -12.97526 -12.84966 -12.69067 -12.57990 -12.23135 -12.06211 -11.71236 -11.56367 -11.38376 -11.17494 -10.97302 -10.70507 -10.50266 -10.42171 -10.28203 -9.49601 -9.27704 -9.24085 -8.98224 -8.27233 -8.23653 -7.92183 -5.92865 -3.94556 1.98687 2.61630 2.97465 3.38247 3.41924 3.45002 4.25161 4.52182 4.58592 4.87501 5.03697 5.09604 5.28859 5.34466 5.37911 5.42789 5.49698 5.56211 5.73218 5.79015 5.84266 5.97336 5.98899 6.10913 6.18410 6.27547 6.36993 6.49149 6.80620 6.84332 6.92551 7.06970 7.24090 7.52835 7.55157 7.76922 7.85701 7.93518 8.08508 8.52111 9.12681 9.68959 11.18693 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.021228 B = 0.004961 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.711021 B = 5642.655480 C = 6559.223036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.158 3.842 3 H 0.038 0.962 4 C -0.220 4.220 5 C 0.080 3.920 6 N -0.303 5.303 7 N -0.381 5.381 8 C 0.105 3.895 9 C 0.050 3.950 10 N -0.534 5.534 11 C 0.021 3.979 12 C 0.060 3.940 13 C -0.104 4.104 14 C 0.023 3.977 15 C -0.516 4.516 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.184 0.816 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.168 0.832 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.014 0.986 39 H 0.011 0.989 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.142 7.110 -11.577 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.049 3.951 3 H 0.056 0.944 4 C -0.232 4.232 5 C -0.107 4.107 6 N -0.124 5.124 7 N -0.164 5.164 8 C -0.037 4.037 9 C -0.096 4.096 10 N -0.259 5.259 11 C -0.127 4.127 12 C -0.067 4.067 13 C -0.142 4.142 14 C -0.015 4.015 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.201 0.799 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.185 0.815 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.030 0.970 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.727 5.779 -12.645 19.538 hybrid contribution 0.675 0.948 1.303 1.747 sum -13.052 6.727 -11.342 18.555 Atomic orbital electron populations 1.21857 0.94313 1.02507 1.00953 1.19775 0.94472 0.93767 0.87106 0.94408 1.19885 1.11872 0.93941 0.97515 1.23735 0.97454 0.96083 0.93393 1.77385 1.20462 1.03264 1.11311 1.48387 1.48351 1.04320 1.15309 1.21780 0.97899 1.03728 0.80284 1.22220 1.00859 0.95217 0.91289 1.62073 1.10166 1.52703 1.00943 1.22452 1.00059 0.96655 0.93530 1.22240 0.84954 0.98503 1.01027 1.21640 0.99165 0.97905 0.95440 1.19051 0.88721 0.96763 0.96926 1.21232 0.91558 1.26691 1.15977 0.92741 1.25024 0.96963 0.96124 0.96391 1.69962 1.01257 1.43271 1.39283 0.86671 0.77380 0.81454 0.82575 1.20227 1.21366 1.20274 0.91760 0.92565 0.92802 0.79879 0.91179 0.89725 0.89357 0.81469 0.96262 0.91727 0.90647 0.95886 0.91152 0.93547 0.92706 0.96807 0.97015 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.84 37.16 0.33 -1.16 16 2 C 0.16 2.06 2.50 -68.86 -0.17 1.89 16 3 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 4 C -0.22 -3.03 3.45 -105.05 -0.36 -3.40 16 5 C 0.08 1.21 11.44 -17.36 -0.20 1.01 16 6 N -0.30 -4.80 12.58 30.63 0.39 -4.41 16 7 N -0.38 -4.95 4.01 -68.17 -0.27 -5.23 16 8 C 0.10 0.88 11.47 59.85 0.69 1.56 16 9 C 0.05 0.62 11.39 -17.22 -0.20 0.42 16 10 N -0.53 -8.15 4.47 -236.28 -1.06 -9.21 16 11 C 0.02 0.29 8.91 60.07 0.53 0.82 16 12 C 0.06 1.11 4.78 -3.83 -0.02 1.09 16 13 C -0.10 -2.25 5.09 -26.73 -0.14 -2.39 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 16 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 19 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.55 6.40 -51.93 -0.33 0.22 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.18 2.64 8.06 -52.49 -0.42 2.21 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.74 6.37 -51.93 -0.33 0.41 16 33 H 0.07 1.11 6.22 -51.93 -0.32 0.79 16 34 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.07 1.39 6.49 -51.93 -0.34 1.05 16 36 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -33.44 326.23 -7.09 -40.53 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.69 Total: -3.21 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.08 Total: -13.56 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.21 Total: -45.89 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.44 -7.09 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180371241.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.617 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds