Wall clock time and date at job start Mon Mar 30 2020 06:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47082 * 2 1 4 4 C 1.50696 * 109.47154 * 239.99650 * 2 1 3 5 5 C 1.39876 * 126.03983 * 286.17910 * 4 2 1 6 6 N 1.30841 * 108.20057 * 179.97438 * 5 4 2 7 7 N 1.40083 * 108.20773 * 359.97438 * 6 5 4 8 8 C 1.46501 * 126.04035 * 180.02562 * 7 6 5 9 9 C 1.34949 * 107.92493 * 359.76087 * 7 6 5 10 10 N 1.46905 * 109.46921 * 119.99887 * 2 1 3 11 11 C 1.46901 * 111.00114 * 302.99499 * 10 2 1 12 12 C 1.46905 * 110.99969 * 179.04363 * 10 2 1 13 13 C 1.52992 * 109.47134 * 190.00032 * 12 10 2 14 14 C 1.53001 * 109.46995 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47193 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99957 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00371 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00044 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00483 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47103 * 59.99780 * 19 17 15 21 21 H 1.48497 * 109.47369 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46652 * 300.00039 * 19 17 15 23 23 H 1.09004 * 109.47191 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46839 * 300.00055 * 1 2 3 25 25 H 1.08998 * 109.47045 * 60.00088 * 1 2 3 26 26 H 1.08000 * 125.90074 * 359.97438 * 5 4 2 27 27 H 1.08996 * 109.46639 * 89.97789 * 8 7 6 28 28 H 1.08995 * 109.47162 * 209.97625 * 8 7 6 29 29 H 1.08996 * 109.46993 * 329.98139 * 8 7 6 30 30 H 1.08001 * 126.12827 * 180.23374 * 9 7 6 31 31 H 1.09001 * 109.46957 * 302.15043 * 11 10 2 32 32 H 1.09004 * 109.46792 * 62.14000 * 11 10 2 33 33 H 1.09000 * 109.47310 * 182.14647 * 11 10 2 34 34 H 1.09004 * 109.46922 * 69.99754 * 12 10 2 35 35 H 1.09000 * 109.46726 * 310.00156 * 12 10 2 36 36 H 1.09004 * 109.47078 * 299.99334 * 13 12 10 37 37 H 1.08995 * 109.47648 * 59.99480 * 13 12 10 38 38 H 1.09003 * 109.46914 * 299.99273 * 14 13 12 39 39 H 1.08994 * 109.47366 * 59.99639 * 14 13 12 40 40 H 0.96997 * 120.00512 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.0096 -2.0917 -1.4501 6 7 2.5295 -2.3268 -2.6275 7 7 2.8996 -1.1009 -3.1953 8 6 3.5195 -0.9117 -4.5091 9 6 2.5790 -0.1244 -2.3208 10 7 2.0197 -0.6925 1.1995 11 6 1.4910 -0.0690 2.4201 12 6 3.4880 -0.7320 1.2221 13 6 3.9559 -1.6659 2.3399 14 6 5.4852 -1.7065 2.3638 15 6 5.9462 -2.6259 3.4653 16 1 5.2209 -3.1305 4.0865 17 6 7.2937 -2.8230 3.6801 18 7 8.1770 -2.2090 2.9234 19 14 7.8652 -3.9621 5.0459 20 1 7.3368 -5.3287 4.8042 21 1 9.3494 -4.0025 5.0683 22 1 7.3634 -3.4609 6.3507 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6286 -2.8355 -0.7660 27 1 2.7423 -0.7820 -5.2622 28 1 4.1552 -0.0265 -4.4869 29 1 4.1222 -1.7857 -4.7558 30 1 2.7337 0.9348 -2.4641 31 1 1.7775 0.9824 2.4443 32 1 0.4040 -0.1495 2.4276 33 1 1.8992 -0.5771 3.2937 34 1 3.8757 0.2711 1.4004 35 1 3.8563 -1.0989 0.2641 36 1 3.5876 -1.2989 3.2980 37 1 3.5682 -2.6688 2.1617 38 1 5.8539 -2.0732 1.4059 39 1 5.8726 -0.7034 2.5424 40 1 9.1250 -2.3473 3.0747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180371241.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:46 Heat of formation + Delta-G solvation = 51.228045 kcal Electronic energy + Delta-G solvation = -18507.493914 eV Core-core repulsion = 15743.986593 eV Total energy + Delta-G solvation = -2763.507322 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15249 -39.02151 -35.90829 -34.31738 -33.57782 -31.95051 -30.17037 -28.61474 -27.45740 -26.55277 -24.36273 -22.74768 -21.90233 -21.50270 -20.45741 -18.47792 -17.73188 -16.84135 -16.52054 -16.20673 -15.93747 -15.45092 -15.30048 -15.11792 -14.29280 -14.19128 -13.76788 -13.60428 -13.53757 -13.41392 -13.16950 -12.84481 -12.70453 -12.61285 -12.45433 -12.35544 -12.14146 -12.04284 -11.42221 -11.35633 -11.30930 -11.04700 -10.54444 -10.30227 -9.23944 -9.13262 -8.19756 -6.31102 1.00159 1.39367 1.43346 1.51076 1.76146 1.89547 2.41260 3.09235 3.13071 3.69589 4.03816 4.14366 4.28190 4.34303 4.40358 4.43348 4.45822 4.55078 4.68843 4.69305 4.74597 4.77692 4.90289 4.91683 4.99334 5.08181 5.12567 5.21405 5.24424 5.29477 5.46991 5.54171 5.74487 5.76274 5.86254 6.17058 6.20657 6.30835 6.38312 6.80994 6.85556 7.38116 8.92264 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.021228 B = 0.004961 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.711021 B = 5642.655480 C = 6559.223036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.160 3.840 3 H 0.046 0.954 4 C -0.239 4.239 5 C 0.064 3.936 6 N -0.343 5.343 7 N -0.383 5.383 8 C 0.095 3.905 9 C 0.057 3.943 10 N -0.540 5.540 11 C 0.021 3.979 12 C 0.079 3.921 13 C -0.088 4.088 14 C 0.029 3.971 15 C -0.542 4.542 16 H 0.060 0.940 17 C -0.001 4.001 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.264 1.264 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.179 0.821 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.204 0.796 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.047 0.953 38 H -0.018 1.018 39 H -0.011 1.011 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 7.902 -11.341 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.051 3.949 3 H 0.063 0.937 4 C -0.251 4.251 5 C -0.122 4.122 6 N -0.165 5.165 7 N -0.166 5.166 8 C -0.045 4.045 9 C -0.091 4.091 10 N -0.264 5.264 11 C -0.127 4.127 12 C -0.049 4.049 13 C -0.126 4.126 14 C -0.009 4.009 15 C -0.580 4.580 16 H 0.078 0.922 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.189 1.189 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.196 0.804 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.221 0.779 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.001 0.999 39 H 0.007 0.993 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.745 6.570 -12.419 20.367 hybrid contribution 0.996 0.745 1.140 1.687 sum -13.749 7.315 -11.280 19.229 Atomic orbital electron populations 1.21801 0.92309 1.02433 1.02284 1.19865 0.95911 0.93543 0.85570 0.93651 1.20069 1.13005 0.93443 0.98545 1.23787 0.97941 0.96976 0.93480 1.77292 1.21822 1.05347 1.12046 1.48766 1.47687 1.03614 1.16492 1.22144 0.98829 1.04689 0.78874 1.22792 0.99175 0.96624 0.90463 1.62006 1.07618 1.54110 1.02690 1.22504 1.01486 0.96643 0.92073 1.21840 0.87477 0.97026 0.98590 1.21390 0.95365 0.98557 0.97292 1.18934 0.92269 0.94840 0.94830 1.21665 0.92281 1.27334 1.16724 0.92199 1.26010 0.97040 0.97746 0.99091 1.70102 1.01712 1.44704 1.41086 0.85486 0.76997 0.79190 0.79299 1.19274 1.20715 1.18889 0.92530 0.91311 0.91350 0.80442 0.89050 0.87084 0.89877 0.77921 0.95545 0.89147 0.92096 0.96355 0.92774 0.92782 0.93377 0.99912 0.99299 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.84 71.98 0.64 -1.85 16 2 C 0.16 3.89 2.50 44.17 0.11 4.00 16 3 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 4 C -0.24 -6.37 3.45 -20.14 -0.07 -6.44 16 5 C 0.06 1.96 11.44 85.24 0.98 2.94 16 6 N -0.34 -11.00 12.58 -57.02 -0.72 -11.72 16 7 N -0.38 -9.57 4.01 -369.57 -1.48 -11.06 16 8 C 0.09 1.42 11.47 127.77 1.47 2.89 16 9 C 0.06 1.30 11.39 83.54 0.95 2.25 16 10 N -0.54 -15.95 4.47 -901.45 -4.03 -19.98 16 11 C 0.02 0.52 8.91 127.69 1.14 1.66 16 12 C 0.08 2.93 4.78 86.30 0.41 3.34 16 13 C -0.09 -3.90 5.09 30.59 0.16 -3.75 16 14 C 0.03 1.62 4.97 29.85 0.15 1.76 16 15 C -0.54 -32.26 9.11 25.60 0.23 -32.03 16 16 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 18 N -0.94 -58.87 13.29 21.45 0.28 -58.59 16 19 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.07 1.13 6.40 -2.38 -0.02 1.11 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.18 5.37 8.06 -2.91 -0.02 5.35 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.20 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.84 6.37 -2.38 -0.02 1.82 16 33 H 0.06 1.72 6.22 -2.39 -0.01 1.71 16 34 H 0.02 0.69 8.12 -2.38 -0.02 0.67 16 35 H 0.05 2.19 6.49 -2.39 -0.02 2.18 16 36 H 0.05 2.29 6.43 -2.39 -0.02 2.28 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.26 15.53 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -73.30 326.23 3.69 -69.61 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.99 Total: 8.99 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 6.62 Total: -24.84 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -5.94 Total: -101.34 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.30 3.69 -69.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180371241.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.835 kcal (2) G-P(sol) polarization free energy of solvation -73.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds