Wall clock time and date at job start Mon Mar 30 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30861 * 125.82213 * 2 1 4 4 N 1.40070 * 108.36013 * 180.02562 * 3 2 1 5 5 C 1.46507 * 126.06795 * 179.97438 * 4 3 2 6 6 C 1.35966 * 107.85891 * 0.02562 * 4 3 2 7 7 C 1.35695 * 107.55402 * 359.97438 * 6 4 3 8 8 N 1.40805 * 126.06855 * 180.26489 * 7 6 4 9 9 C 1.46496 * 119.99804 * 359.68978 * 8 7 6 10 10 C 1.52999 * 109.47089 * 179.97438 * 9 8 7 11 11 C 1.53009 * 109.47161 * 300.00338 * 10 9 8 12 12 C 1.53004 * 109.47220 * 60.00232 * 10 9 8 13 13 C 1.52993 * 109.47433 * 180.02562 * 10 9 8 14 14 C 1.50700 * 109.47570 * 179.97438 * 13 10 9 15 15 H 1.08004 * 119.99621 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00289 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00104 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99841 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46885 * 89.99962 * 18 16 14 20 20 H 1.48502 * 109.46935 * 209.99841 * 18 16 14 21 21 H 1.48497 * 109.47204 * 330.00252 * 18 16 14 22 22 H 1.09000 * 109.46860 * 269.95833 * 1 2 3 23 23 H 1.09004 * 109.46802 * 29.95561 * 1 2 3 24 24 H 1.08997 * 109.47496 * 149.95642 * 1 2 3 25 25 H 1.09003 * 109.46861 * 89.98123 * 5 4 3 26 26 H 1.09005 * 109.46747 * 209.97760 * 5 4 3 27 27 H 1.09000 * 109.47344 * 329.97987 * 5 4 3 28 28 H 1.08007 * 126.21906 * 180.02562 * 6 4 3 29 29 H 0.97003 * 120.00134 * 179.68813 * 8 7 6 30 30 H 1.08993 * 109.47523 * 300.00118 * 9 8 7 31 31 H 1.09004 * 109.47190 * 60.00514 * 9 8 7 32 32 H 1.08996 * 109.47208 * 59.99856 * 11 10 9 33 33 H 1.08993 * 109.46849 * 179.97438 * 11 10 9 34 34 H 1.09001 * 109.46664 * 299.99740 * 11 10 9 35 35 H 1.08990 * 109.47055 * 59.99582 * 12 10 9 36 36 H 1.08993 * 109.47022 * 180.02562 * 12 10 9 37 37 H 1.09006 * 109.46521 * 299.99822 * 12 10 9 38 38 H 1.08993 * 109.47272 * 300.00331 * 13 10 9 39 39 H 1.09009 * 109.47056 * 60.00034 * 13 10 9 40 40 H 0.96997 * 120.00279 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0611 0.0000 4 7 3.6090 0.6408 -0.0006 5 6 4.7872 1.5116 -0.0013 6 6 3.6185 -0.7189 -0.0015 7 6 2.3276 -1.1371 -0.0009 8 7 1.8897 -2.4753 0.0037 9 6 2.8677 -3.5660 0.0016 10 6 2.1343 -4.9087 0.0082 11 6 1.2626 -5.0076 1.2618 12 6 1.2510 -5.0135 -1.2367 13 6 3.1557 -6.0478 0.0067 14 6 2.4333 -7.3704 0.0138 15 1 1.3535 -7.3958 0.0185 16 6 3.1507 -8.5478 0.0133 17 7 2.5202 -9.7020 0.0190 18 14 5.0181 -8.5036 0.0044 19 1 5.5195 -8.4886 1.4022 20 1 5.5383 -9.7058 -0.6952 21 1 5.4810 -7.2815 -0.7007 22 1 -0.3633 -0.0007 1.0277 23 1 -0.3633 0.8904 -0.5132 24 1 -0.3634 -0.8895 -0.5145 25 1 5.0797 1.7280 1.0262 26 1 5.6082 1.0115 -0.5152 27 1 4.5503 2.4430 -0.5155 28 1 4.4942 -1.3510 -0.0018 29 1 0.9405 -2.6751 0.0083 30 1 3.4890 -3.4953 -0.8912 31 1 3.4967 -3.4917 0.8888 32 1 0.5350 -4.1961 1.2634 33 1 0.7398 -5.9639 1.2663 34 1 1.8920 -4.9330 2.1487 35 1 1.8718 -4.9430 -2.1297 36 1 0.7281 -5.9698 -1.2317 37 1 0.5232 -4.2019 -1.2351 38 1 3.7769 -5.9776 -0.8861 39 1 3.7847 -5.9730 0.8938 40 1 3.0249 -10.5303 0.0182 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189563767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:13 Heat of formation + Delta-G solvation = 64.794743 kcal Electronic energy + Delta-G solvation = -18572.889952 eV Core-core repulsion = 15809.970927 eV Total energy + Delta-G solvation = -2762.919026 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.95699 -37.69157 -34.50703 -33.18056 -32.06946 -29.77544 -28.63949 -27.51263 -26.46053 -26.00054 -24.57166 -22.35712 -20.29243 -19.85767 -17.93572 -17.06230 -16.76112 -15.49072 -15.11823 -14.76019 -14.20220 -14.07347 -13.76296 -13.56691 -13.27682 -13.05281 -12.64954 -12.63530 -12.39113 -12.21135 -12.08521 -11.94416 -11.25369 -11.07741 -10.97022 -10.63809 -10.58205 -10.39029 -10.00605 -9.75307 -9.59312 -9.43013 -9.03692 -8.95470 -8.52671 -6.78997 -6.02966 -3.99750 1.98045 2.58247 3.08013 3.30377 3.38417 3.41129 3.99679 4.45688 4.59424 4.93420 5.05284 5.07786 5.28291 5.29915 5.36143 5.46970 5.59951 5.62270 5.73020 5.80868 5.85091 6.05851 6.14956 6.21694 6.26502 6.42854 6.55740 6.66072 6.67684 6.95522 7.07645 7.10094 7.12055 7.23560 7.40665 7.67825 7.80278 7.90929 8.23722 8.55538 9.02074 9.59775 11.10022 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.004755 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.475887 B = 5887.110456 C = 6568.609500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.031 3.969 3 N -0.283 5.283 4 N -0.381 5.381 5 C 0.115 3.885 6 C -0.040 4.040 7 C 0.078 3.922 8 N -0.736 5.736 9 C 0.143 3.857 10 C -0.061 4.061 11 C -0.126 4.126 12 C -0.126 4.126 13 C -0.002 4.002 14 C -0.509 4.509 15 H 0.078 0.922 16 C 0.066 3.934 17 N -0.905 5.905 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.167 0.833 29 H 0.397 0.603 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 19.190 -0.140 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.138 4.138 3 N -0.107 5.107 4 N -0.170 5.170 5 C -0.027 4.027 6 C -0.186 4.186 7 C -0.031 4.031 8 N -0.374 5.374 9 C 0.019 3.981 10 C -0.061 4.061 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.040 4.040 14 C -0.547 4.547 15 H 0.096 0.904 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.703 3.297 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.184 0.816 29 H 0.234 0.766 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.590 20.230 -0.144 20.293 hybrid contribution 0.979 -1.163 0.035 1.520 sum 2.569 19.067 -0.109 19.240 Atomic orbital electron populations 1.20069 0.86993 1.02933 1.02607 1.22008 0.96651 0.89550 1.05603 1.77045 0.86917 1.22668 1.24103 1.47847 1.04507 1.04260 1.60413 1.21668 0.83905 0.94428 1.02713 1.21642 0.97970 0.84576 1.14461 1.17671 0.91420 0.86268 1.07694 1.44075 1.08027 0.99715 1.85608 1.21386 0.91096 0.86168 0.99459 1.20618 0.96797 0.93007 0.95670 1.21737 0.98719 1.01195 0.96695 1.21730 0.98652 1.01185 0.96750 1.19590 0.94301 0.93843 0.96228 1.21109 0.95145 0.88350 1.50130 0.90410 1.25006 0.98088 0.95563 0.94834 1.69902 1.35620 0.97374 1.51492 0.86852 0.86816 0.77618 0.78414 1.20431 1.21541 1.19097 0.90912 0.91103 0.90880 0.91443 0.89883 0.89875 0.81606 0.76642 0.93606 0.93611 0.94823 0.91222 0.93651 0.93643 0.91220 0.94838 0.96562 0.97010 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.29 36.01 0.37 -0.35 16 2 C 0.03 0.43 7.22 -82.26 -0.59 -0.16 16 3 N -0.28 -4.17 12.57 33.74 0.42 -3.75 16 4 N -0.38 -4.98 4.04 -67.78 -0.27 -5.26 16 5 C 0.11 0.94 11.48 59.85 0.69 1.63 16 6 C -0.04 -0.55 10.85 -16.63 -0.18 -0.73 16 7 C 0.08 1.15 6.95 -83.89 -0.58 0.57 16 8 N -0.74 -10.76 5.20 -58.80 -0.31 -11.06 16 9 C 0.14 2.31 4.47 -4.04 -0.02 2.29 16 10 C -0.06 -1.11 0.54 -154.51 -0.08 -1.20 16 11 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 12 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 13 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 14 C -0.51 -13.68 8.21 -34.44 -0.28 -13.96 16 15 H 0.08 2.22 5.92 -52.48 -0.31 1.91 16 16 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 18 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.17 2.01 7.85 -52.48 -0.41 1.59 16 29 H 0.40 5.51 5.68 -40.82 -0.23 5.28 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.51 6.86 -51.93 -0.36 0.16 16 33 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 37 H 0.03 0.51 6.86 -51.93 -0.36 0.15 16 38 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.27 7.57 -51.92 -0.39 -0.13 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -31.32 319.14 -6.00 -37.33 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.49 Total: 1.98 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.27 Total: -14.19 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.62 Total: -46.58 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.32 -6.00 -37.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189563767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.124 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds