Wall clock time and date at job start Mon Mar 30 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30861 * 125.82213 * 2 1 4 4 N 1.40070 * 108.36013 * 180.02562 * 3 2 1 5 5 C 1.46507 * 126.06795 * 179.97438 * 4 3 2 6 6 C 1.35966 * 107.85891 * 0.02562 * 4 3 2 7 7 C 1.35695 * 107.55402 * 359.97438 * 6 4 3 8 8 N 1.40805 * 126.06855 * 180.26489 * 7 6 4 9 9 C 1.46496 * 119.99804 * 359.68978 * 8 7 6 10 10 C 1.52999 * 109.47089 * 179.97438 * 9 8 7 11 11 C 1.53009 * 109.47161 * 300.00338 * 10 9 8 12 12 C 1.53004 * 109.47220 * 60.00232 * 10 9 8 13 13 C 1.52993 * 109.47433 * 180.02562 * 10 9 8 14 14 C 1.50700 * 109.47570 * 179.97438 * 13 10 9 15 15 H 1.08004 * 119.99621 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00289 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00104 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99841 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46885 * 89.99962 * 18 16 14 20 20 H 1.48502 * 109.46935 * 209.99841 * 18 16 14 21 21 H 1.48497 * 109.47204 * 330.00252 * 18 16 14 22 22 H 1.09000 * 109.46860 * 269.95833 * 1 2 3 23 23 H 1.09004 * 109.46802 * 29.95561 * 1 2 3 24 24 H 1.08997 * 109.47496 * 149.95642 * 1 2 3 25 25 H 1.09003 * 109.46861 * 89.98123 * 5 4 3 26 26 H 1.09005 * 109.46747 * 209.97760 * 5 4 3 27 27 H 1.09000 * 109.47344 * 329.97987 * 5 4 3 28 28 H 1.08007 * 126.21906 * 180.02562 * 6 4 3 29 29 H 0.97003 * 120.00134 * 179.68813 * 8 7 6 30 30 H 1.08993 * 109.47523 * 300.00118 * 9 8 7 31 31 H 1.09004 * 109.47190 * 60.00514 * 9 8 7 32 32 H 1.08996 * 109.47208 * 59.99856 * 11 10 9 33 33 H 1.08993 * 109.46849 * 179.97438 * 11 10 9 34 34 H 1.09001 * 109.46664 * 299.99740 * 11 10 9 35 35 H 1.08990 * 109.47055 * 59.99582 * 12 10 9 36 36 H 1.08993 * 109.47022 * 180.02562 * 12 10 9 37 37 H 1.09006 * 109.46521 * 299.99822 * 12 10 9 38 38 H 1.08993 * 109.47272 * 300.00331 * 13 10 9 39 39 H 1.09009 * 109.47056 * 60.00034 * 13 10 9 40 40 H 0.96997 * 120.00279 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0611 0.0000 4 7 3.6090 0.6408 -0.0006 5 6 4.7872 1.5116 -0.0013 6 6 3.6185 -0.7189 -0.0015 7 6 2.3276 -1.1371 -0.0009 8 7 1.8897 -2.4753 0.0037 9 6 2.8677 -3.5660 0.0016 10 6 2.1343 -4.9087 0.0082 11 6 1.2626 -5.0076 1.2618 12 6 1.2510 -5.0135 -1.2367 13 6 3.1557 -6.0478 0.0067 14 6 2.4333 -7.3704 0.0138 15 1 1.3535 -7.3958 0.0185 16 6 3.1507 -8.5478 0.0133 17 7 2.5202 -9.7020 0.0190 18 14 5.0181 -8.5036 0.0044 19 1 5.5195 -8.4886 1.4022 20 1 5.5383 -9.7058 -0.6952 21 1 5.4810 -7.2815 -0.7007 22 1 -0.3633 -0.0007 1.0277 23 1 -0.3633 0.8904 -0.5132 24 1 -0.3634 -0.8895 -0.5145 25 1 5.0797 1.7280 1.0262 26 1 5.6082 1.0115 -0.5152 27 1 4.5503 2.4430 -0.5155 28 1 4.4942 -1.3510 -0.0018 29 1 0.9405 -2.6751 0.0083 30 1 3.4890 -3.4953 -0.8912 31 1 3.4967 -3.4917 0.8888 32 1 0.5350 -4.1961 1.2634 33 1 0.7398 -5.9639 1.2663 34 1 1.8920 -4.9330 2.1487 35 1 1.8718 -4.9430 -2.1297 36 1 0.7281 -5.9698 -1.2317 37 1 0.5232 -4.2019 -1.2351 38 1 3.7769 -5.9776 -0.8861 39 1 3.7847 -5.9730 0.8938 40 1 3.0249 -10.5303 0.0182 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189563767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:12 Heat of formation + Delta-G solvation = 45.101493 kcal Electronic energy + Delta-G solvation = -18573.743916 eV Core-core repulsion = 15809.970927 eV Total energy + Delta-G solvation = -2763.772989 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.94903 -39.13659 -35.72349 -34.53725 -33.74426 -30.63030 -30.00430 -29.04229 -27.93626 -27.21898 -25.59276 -24.09215 -21.43062 -20.88246 -19.36139 -18.86011 -18.06367 -16.41473 -16.36413 -16.20118 -15.62720 -15.54750 -15.06497 -14.66857 -14.40644 -14.15196 -14.11823 -14.03860 -13.74628 -13.13207 -13.06504 -12.88858 -12.84051 -12.76845 -12.57785 -12.25288 -12.07717 -11.76264 -11.61318 -11.49286 -11.04821 -10.83009 -10.76744 -10.67759 -9.99934 -8.19607 -7.85575 -6.20065 0.98895 1.38533 1.40440 1.50940 1.73603 2.04187 2.41791 2.87679 3.15911 3.76318 3.99659 4.06761 4.16301 4.25599 4.33571 4.50260 4.53191 4.70217 4.73322 4.82173 4.83400 4.84573 4.86817 4.99880 5.04276 5.08595 5.14223 5.15801 5.36073 5.44051 5.44785 5.57316 5.65737 5.74732 5.80778 6.19168 6.41043 6.61920 6.85990 6.88513 7.15347 7.42593 8.96461 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.004755 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.475887 B = 5887.110456 C = 6568.609500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.021 3.979 3 N -0.309 5.309 4 N -0.383 5.383 5 C 0.104 3.896 6 C -0.040 4.040 7 C 0.054 3.946 8 N -0.734 5.734 9 C 0.158 3.842 10 C -0.057 4.057 11 C -0.120 4.120 12 C -0.120 4.120 13 C -0.001 4.001 14 C -0.504 4.504 15 H 0.046 0.954 16 C 0.002 3.998 17 N -0.955 5.955 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.246 1.246 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.182 0.818 29 H 0.400 0.600 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 21.411 -0.155 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.147 4.147 3 N -0.135 5.135 4 N -0.172 5.172 5 C -0.036 4.036 6 C -0.188 4.188 7 C -0.054 4.054 8 N -0.373 5.373 9 C 0.033 3.967 10 C -0.058 4.058 11 C -0.177 4.177 12 C -0.177 4.177 13 C -0.039 4.039 14 C -0.542 4.542 15 H 0.064 0.936 16 C -0.194 4.194 17 N -0.597 5.597 18 Si 0.764 3.236 19 H -0.197 1.197 20 H -0.217 1.217 21 H -0.170 1.170 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.199 0.801 29 H 0.237 0.763 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.003 22.507 -0.159 22.707 hybrid contribution 0.497 -1.793 0.044 1.861 sum 3.500 20.714 -0.115 21.008 Atomic orbital electron populations 1.20165 0.85239 1.03719 1.03426 1.22452 0.97990 0.89176 1.05060 1.77011 0.87937 1.23355 1.25203 1.48284 1.04984 1.04590 1.59308 1.22032 0.83029 0.94477 1.04060 1.22012 0.98329 0.85232 1.13203 1.17866 0.92085 0.86195 1.09230 1.43851 1.07768 0.99449 1.86226 1.21082 0.90909 0.84979 0.99703 1.20508 0.96081 0.93134 0.96040 1.21652 0.99027 1.00599 0.96465 1.21647 0.98961 1.00605 0.96513 1.19555 0.95006 0.93147 0.96204 1.21420 0.94137 0.90431 1.48200 0.93588 1.25903 1.03246 0.95219 0.95026 1.70060 1.37608 0.98186 1.53827 0.85824 0.80747 0.78204 0.78860 1.19653 1.21719 1.16962 0.90006 0.90399 0.90012 0.90155 0.87624 0.89107 0.80079 0.76301 0.93418 0.93384 0.91970 0.94299 0.93703 0.93710 0.94290 0.91962 0.96446 0.96616 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.29 71.24 0.73 -0.56 16 2 C 0.02 0.56 7.22 43.19 0.31 0.87 16 3 N -0.31 -8.59 12.57 -47.15 -0.59 -9.18 16 4 N -0.38 -9.11 4.04 -368.37 -1.49 -10.60 16 5 C 0.10 1.43 11.48 127.77 1.47 2.90 16 6 C -0.04 -1.01 10.85 83.46 0.91 -0.10 16 7 C 0.05 1.47 6.95 37.59 0.26 1.73 16 8 N -0.73 -19.54 5.20 -339.94 -1.77 -21.30 16 9 C 0.16 4.68 4.47 86.38 0.39 5.06 16 10 C -0.06 -2.03 0.54 -52.18 -0.03 -2.06 16 11 C -0.12 -4.18 8.05 71.99 0.58 -3.60 16 12 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 13 C 0.00 -0.06 3.11 29.85 0.09 0.04 16 14 C -0.50 -27.47 8.21 25.60 0.21 -27.26 16 15 H 0.05 2.75 5.92 -2.91 -0.02 2.73 16 16 C 0.00 0.10 5.47 84.66 0.46 0.57 16 17 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 18 Si 0.94 43.64 27.47 68.60 1.88 45.52 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 21 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.08 1.41 7.69 -2.39 -0.02 1.39 16 25 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.18 3.81 7.85 -2.91 -0.02 3.79 16 29 H 0.40 10.01 5.68 -92.71 -0.53 9.48 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.06 1.78 6.86 -2.39 -0.02 1.77 16 33 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 37 H 0.06 1.78 6.86 -2.38 -0.02 1.77 16 38 H 0.02 0.76 7.20 -2.39 -0.02 0.75 16 39 H 0.02 0.68 7.57 -2.38 -0.02 0.66 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -67.93 319.14 4.73 -63.20 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.43 Total: 17.30 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 5.96 Total: -26.02 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -3.55 Total: -100.01 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -67.93 4.73 -63.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189563767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.305 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds