Wall clock time and date at job start Mon Mar 30 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 N 1.46906 * 109.47378 * 119.99833 * 2 1 3 5 5 C 1.46900 * 110.99927 * 85.00135 * 4 2 1 6 6 C 1.50697 * 109.47124 * 179.97438 * 5 4 2 7 7 C 1.34668 * 125.98768 * 95.00261 * 6 5 4 8 8 N 1.36886 * 106.81692 * 179.97438 * 7 6 5 9 9 C 1.46499 * 126.39666 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47435 * 89.99923 * 9 8 7 11 11 C 1.52999 * 109.47641 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47176 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99603 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00169 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99873 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46868 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47503 * 119.99708 * 16 14 12 19 19 H 1.48499 * 109.47133 * 240.00384 * 16 14 12 20 20 C 1.35044 * 107.20438 * 359.97438 * 8 7 6 21 21 N 1.30496 * 108.69901 * 359.76315 * 20 8 7 22 22 H 1.08992 * 109.47715 * 60.00117 * 1 2 3 23 23 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46998 * 299.99586 * 1 2 3 25 25 H 1.09000 * 109.47250 * 239.99959 * 2 1 3 26 26 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47045 * 299.99984 * 3 2 1 28 28 H 1.09000 * 109.47140 * 59.99892 * 3 2 1 29 29 H 1.00900 * 110.99964 * 321.04966 * 4 2 1 30 30 H 1.08997 * 109.47355 * 300.00567 * 5 4 2 31 31 H 1.09003 * 109.47178 * 60.00051 * 5 4 2 32 32 H 1.08000 * 126.59060 * 359.94127 * 7 6 5 33 33 H 1.08997 * 109.46933 * 210.00578 * 9 8 7 34 34 H 1.09005 * 109.46960 * 329.99832 * 9 8 7 35 35 H 1.09005 * 109.47291 * 300.00456 * 10 9 8 36 36 H 1.09003 * 109.46991 * 59.99480 * 10 9 8 37 37 H 1.08992 * 109.47060 * 300.00333 * 11 10 9 38 38 H 1.09000 * 109.46772 * 60.00427 * 11 10 9 39 39 H 0.97006 * 119.99444 * 180.02562 * 15 14 12 40 40 H 1.08002 * 125.64558 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 -2.1437 0.9807 6 6 2.5886 -2.8185 2.2295 7 6 1.8281 -3.3558 3.2024 8 7 2.6857 -3.8598 4.1427 9 6 2.3113 -4.5396 5.3852 10 6 2.1925 -6.0431 5.1282 11 6 1.8022 -6.7532 6.4260 12 6 1.6859 -8.2343 6.1728 13 1 1.8722 -8.6296 5.1852 14 6 1.3416 -9.0846 7.2021 15 7 1.1141 -8.6031 8.4047 16 14 1.1981 -10.9204 6.8886 17 1 1.5011 -11.2042 5.4627 18 1 2.1614 -11.6473 7.7540 19 1 -0.1829 -11.3693 7.1994 20 6 3.9413 -3.6133 3.7111 21 7 3.8755 -2.9951 2.5638 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6765 1.9563 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.4496 -0.4722 2.0023 30 1 1.0872 -2.5187 0.7425 31 1 2.7589 -2.3575 0.1531 32 1 0.7489 -3.3832 3.2347 33 1 3.0746 -4.3595 6.1421 34 1 1.3538 -4.1542 5.7360 35 1 1.4292 -6.2232 4.3712 36 1 3.1499 -6.4284 4.7774 37 1 2.5658 -6.5732 7.1825 38 1 0.8448 -6.3680 6.7770 39 1 0.8723 -9.2015 9.1289 40 1 4.8495 -3.8859 4.2282 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232747315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:35 Heat of formation + Delta-G solvation = 35.640266 kcal Electronic energy + Delta-G solvation = -17588.225463 eV Core-core repulsion = 14824.042204 eV Total energy + Delta-G solvation = -2764.183259 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.81602 -37.50404 -35.35824 -33.25110 -32.11666 -30.84805 -28.94766 -27.33557 -26.96314 -24.77525 -23.45520 -21.08680 -20.94646 -20.35758 -19.92395 -17.03909 -16.14657 -15.71132 -15.36246 -14.82779 -14.65917 -14.47355 -14.26246 -13.67213 -13.61768 -13.50790 -12.75339 -12.50460 -12.43222 -12.19333 -12.09873 -11.70732 -11.58511 -11.42068 -11.03587 -11.01587 -10.96672 -10.66532 -9.99232 -9.84722 -9.60316 -9.35278 -9.03284 -8.50639 -8.47551 -8.15570 -6.12237 -4.15313 2.29468 3.11598 3.24264 3.25990 3.32289 3.36639 4.26160 4.37018 4.65818 4.74411 4.89446 5.01343 5.09947 5.14051 5.24388 5.32291 5.36449 5.41341 5.52031 5.59174 5.60956 5.65974 5.74588 5.78417 5.91877 5.99377 6.10794 6.21890 6.49398 6.62622 6.81515 6.87008 7.04378 7.31014 7.48108 7.48881 7.58646 7.85550 8.26890 8.35109 8.91055 9.49942 10.99002 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.043473 B = 0.003079 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.926720 B = 9091.014555 C = 9275.229359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 C -0.139 4.139 4 N -0.678 5.678 5 C 0.149 3.851 6 C -0.008 4.008 7 C -0.047 4.047 8 N -0.447 5.447 9 C 0.099 3.901 10 C -0.122 4.122 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.180 3.820 21 N -0.485 5.485 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.340 0.660 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 15.809 -12.600 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.033 4.033 3 C -0.197 4.197 4 N -0.309 5.309 5 C 0.020 3.980 6 C -0.138 4.138 7 C -0.183 4.183 8 N -0.127 5.127 9 C -0.022 4.022 10 C -0.161 4.161 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.103 4.103 21 N -0.203 5.203 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.158 0.842 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.184 0.816 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.804 16.031 -12.899 20.591 hybrid contribution -1.812 -1.669 0.636 2.544 sum -1.009 14.362 -12.263 18.912 Atomic orbital electron populations 1.22536 0.97519 1.01905 1.02311 1.21566 0.92329 0.95675 0.93709 1.21756 1.01876 0.94933 1.01094 1.60577 1.57378 1.07521 1.05391 1.20013 0.98257 0.86111 0.93633 1.20312 0.89604 1.05721 0.98186 1.22446 0.96964 1.06224 0.92659 1.45790 1.07027 1.41662 1.18205 1.22293 1.02329 0.94875 0.82751 1.22042 1.01580 0.90357 1.02089 1.19057 0.96856 0.94951 0.90494 1.21209 1.47105 0.91983 0.95798 0.92576 1.25020 0.95212 0.99051 0.95110 1.69964 1.47377 1.35144 1.00875 0.86510 0.77749 0.85223 0.78405 1.19697 1.20880 1.20920 1.24919 0.88670 1.02458 0.94242 1.70112 1.20607 1.17478 1.12099 0.92170 0.92691 0.92459 0.90535 0.91958 0.92747 0.92859 0.84198 0.94330 0.90130 0.81632 0.89080 0.89453 0.92636 0.92480 0.96227 0.96321 0.92901 0.78234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.16 37.15 0.34 -1.03 16 2 C 0.08 0.68 3.20 -67.71 -0.22 0.46 16 3 C -0.14 -1.13 9.52 37.16 0.35 -0.77 16 4 N -0.68 -7.41 6.24 -108.00 -0.67 -8.09 16 5 C 0.15 1.78 6.02 -4.98 -0.03 1.75 16 6 C -0.01 -0.12 6.60 -82.85 -0.55 -0.66 16 7 C -0.05 -0.67 11.49 -16.56 -0.19 -0.86 16 8 N -0.45 -6.66 2.75 -118.58 -0.33 -6.99 16 9 C 0.10 1.49 6.15 -4.05 -0.02 1.47 16 10 C -0.12 -2.32 5.48 -26.73 -0.15 -2.47 16 11 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 12 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.18 2.71 12.56 -90.38 -1.14 1.57 16 21 N -0.48 -8.01 11.25 -10.88 -0.12 -8.13 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.42 7.45 -51.93 -0.39 0.04 16 24 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 25 H 0.08 0.68 7.80 -51.93 -0.40 0.27 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.34 3.58 8.46 -39.29 -0.33 3.25 16 30 H 0.04 0.40 7.44 -51.93 -0.39 0.02 16 31 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 32 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.20 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -30.63 335.03 -9.47 -40.10 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.97 Total: 0.38 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -2.15 Total: -13.20 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.39 Total: -48.51 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.63 -9.47 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232747315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.738 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds