Wall clock time and date at job start Mon Mar 30 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 N 1.46906 * 109.47378 * 119.99833 * 2 1 3 5 5 C 1.46900 * 110.99927 * 85.00135 * 4 2 1 6 6 C 1.50697 * 109.47124 * 179.97438 * 5 4 2 7 7 C 1.34668 * 125.98768 * 95.00261 * 6 5 4 8 8 N 1.36886 * 106.81692 * 179.97438 * 7 6 5 9 9 C 1.46499 * 126.39666 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47435 * 89.99923 * 9 8 7 11 11 C 1.52999 * 109.47641 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47176 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99603 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00169 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99873 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46868 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47503 * 119.99708 * 16 14 12 19 19 H 1.48499 * 109.47133 * 240.00384 * 16 14 12 20 20 C 1.35044 * 107.20438 * 359.97438 * 8 7 6 21 21 N 1.30496 * 108.69901 * 359.76315 * 20 8 7 22 22 H 1.08992 * 109.47715 * 60.00117 * 1 2 3 23 23 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46998 * 299.99586 * 1 2 3 25 25 H 1.09000 * 109.47250 * 239.99959 * 2 1 3 26 26 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47045 * 299.99984 * 3 2 1 28 28 H 1.09000 * 109.47140 * 59.99892 * 3 2 1 29 29 H 1.00900 * 110.99964 * 321.04966 * 4 2 1 30 30 H 1.08997 * 109.47355 * 300.00567 * 5 4 2 31 31 H 1.09003 * 109.47178 * 60.00051 * 5 4 2 32 32 H 1.08000 * 126.59060 * 359.94127 * 7 6 5 33 33 H 1.08997 * 109.46933 * 210.00578 * 9 8 7 34 34 H 1.09005 * 109.46960 * 329.99832 * 9 8 7 35 35 H 1.09005 * 109.47291 * 300.00456 * 10 9 8 36 36 H 1.09003 * 109.46991 * 59.99480 * 10 9 8 37 37 H 1.08992 * 109.47060 * 300.00333 * 11 10 9 38 38 H 1.09000 * 109.46772 * 60.00427 * 11 10 9 39 39 H 0.97006 * 119.99444 * 180.02562 * 15 14 12 40 40 H 1.08002 * 125.64558 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 -2.1437 0.9807 6 6 2.5886 -2.8185 2.2295 7 6 1.8281 -3.3558 3.2024 8 7 2.6857 -3.8598 4.1427 9 6 2.3113 -4.5396 5.3852 10 6 2.1925 -6.0431 5.1282 11 6 1.8022 -6.7532 6.4260 12 6 1.6859 -8.2343 6.1728 13 1 1.8722 -8.6296 5.1852 14 6 1.3416 -9.0846 7.2021 15 7 1.1141 -8.6031 8.4047 16 14 1.1981 -10.9204 6.8886 17 1 1.5011 -11.2042 5.4627 18 1 2.1614 -11.6473 7.7540 19 1 -0.1829 -11.3693 7.1994 20 6 3.9413 -3.6133 3.7111 21 7 3.8755 -2.9951 2.5638 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6765 1.9563 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.4496 -0.4722 2.0023 30 1 1.0872 -2.5187 0.7425 31 1 2.7589 -2.3575 0.1531 32 1 0.7489 -3.3832 3.2347 33 1 3.0746 -4.3595 6.1421 34 1 1.3538 -4.1542 5.7360 35 1 1.4292 -6.2232 4.3712 36 1 3.1499 -6.4284 4.7774 37 1 2.5658 -6.5732 7.1825 38 1 0.8448 -6.3680 6.7770 39 1 0.8723 -9.2015 9.1289 40 1 4.8495 -3.8859 4.2282 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232747315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:35 Heat of formation + Delta-G solvation = 18.602111 kcal Electronic energy + Delta-G solvation = -17588.964292 eV Core-core repulsion = 14824.042204 eV Total energy + Delta-G solvation = -2764.922088 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.95023 -38.29360 -36.83384 -34.98533 -33.24208 -32.32828 -29.99371 -28.58093 -27.94479 -25.96986 -24.98093 -22.54452 -21.80282 -21.63916 -21.00302 -18.69547 -17.71341 -16.61877 -16.53271 -16.24291 -15.93191 -15.77667 -15.37954 -14.75287 -14.55755 -14.39755 -14.35904 -13.84173 -13.47553 -13.28743 -13.17089 -12.95921 -12.74605 -12.69895 -12.55713 -12.37314 -12.09236 -11.71982 -11.68822 -11.58774 -11.32168 -10.81855 -10.58804 -10.38913 -9.40731 -9.16883 -8.24105 -6.34245 1.17061 1.37872 1.39490 1.51436 1.96075 2.14609 2.38920 3.10114 3.42719 3.70188 3.82908 4.03238 4.04678 4.16690 4.22285 4.35797 4.40073 4.43627 4.49015 4.64606 4.74091 4.81194 4.86000 4.92495 5.00604 5.03436 5.09003 5.10968 5.30877 5.43102 5.46062 5.46654 5.66841 5.80132 5.83187 6.18824 6.19946 6.33483 6.53593 6.81875 7.22114 7.35300 8.87349 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.043473 B = 0.003079 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.926720 B = 9091.014555 C = 9275.229359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 C -0.135 4.135 4 N -0.688 5.688 5 C 0.155 3.845 6 C -0.018 4.018 7 C -0.053 4.053 8 N -0.450 5.450 9 C 0.112 3.888 10 C -0.105 4.105 11 C 0.028 3.972 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.960 3.040 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.173 3.827 21 N -0.516 5.516 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.341 0.659 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.188 0.812 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.004 0.996 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 15.980 -13.423 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 C -0.193 4.193 4 N -0.320 5.320 5 C 0.025 3.975 6 C -0.148 4.148 7 C -0.188 4.188 8 N -0.131 5.131 9 C -0.009 4.009 10 C -0.144 4.144 11 C -0.010 4.010 12 C -0.582 4.582 13 H 0.072 0.928 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.110 4.110 21 N -0.235 5.235 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.160 0.840 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.205 0.795 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 0.311 16.219 -13.745 21.262 hybrid contribution -1.642 -1.681 0.865 2.504 sum -1.331 14.538 -12.880 19.468 Atomic orbital electron populations 1.22458 0.96236 1.01958 1.02962 1.21621 0.93342 0.95664 0.92709 1.21730 1.00979 0.94705 1.01904 1.60551 1.58081 1.07012 1.06364 1.19974 0.98658 0.86717 0.92130 1.20754 0.89183 1.05736 0.99091 1.22849 0.97962 1.05737 0.92244 1.45757 1.07223 1.41862 1.18228 1.22057 1.03605 0.92105 0.83175 1.21735 1.00827 0.92779 0.99036 1.18926 0.95493 0.94072 0.92493 1.21658 1.46848 0.93943 0.95765 0.92765 1.25881 0.94899 1.03768 0.94908 1.70067 1.48275 1.36830 1.01738 0.85475 0.77910 0.79632 0.78511 1.19034 1.20305 1.20314 1.25424 0.89472 1.01993 0.94089 1.70120 1.21799 1.18557 1.12993 0.91034 0.92918 0.92276 0.90744 0.93302 0.91091 0.92887 0.84017 0.92741 0.91117 0.79539 0.87664 0.88295 0.93227 0.92946 0.97803 0.97966 0.92662 0.76112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.16 71.98 0.66 -1.65 16 2 C 0.08 1.23 3.20 44.91 0.14 1.38 16 3 C -0.14 -2.03 9.52 71.98 0.69 -1.34 16 4 N -0.69 -14.37 6.24 -495.59 -3.09 -17.46 16 5 C 0.15 3.54 6.02 85.56 0.52 4.06 16 6 C -0.02 -0.51 6.60 41.39 0.27 -0.24 16 7 C -0.05 -1.42 11.49 83.09 0.95 -0.46 16 8 N -0.45 -12.72 2.75 -529.08 -1.46 -14.18 16 9 C 0.11 3.21 6.15 86.38 0.53 3.74 16 10 C -0.11 -3.92 5.48 30.59 0.17 -3.75 16 11 C 0.03 1.34 4.97 29.85 0.15 1.49 16 12 C -0.54 -29.80 9.11 25.60 0.23 -29.57 16 13 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 16 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.17 4.99 12.56 180.26 2.26 7.26 16 21 N -0.52 -16.65 11.25 -188.32 -2.12 -18.77 16 22 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 23 H 0.05 0.71 7.45 -2.38 -0.02 0.69 16 24 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 25 H 0.07 1.24 7.80 -2.39 -0.02 1.22 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.34 6.81 8.46 -89.69 -0.76 6.05 16 30 H 0.05 1.05 7.44 -2.39 -0.02 1.03 16 31 H 0.07 1.74 8.06 -2.39 -0.02 1.72 16 32 H 0.19 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 40 H 0.22 5.05 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -64.67 335.03 2.92 -61.75 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.23 Total: 15.86 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 7.04 Total: -18.42 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -6.38 Total: -104.47 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -64.67 2.92 -61.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232747315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.356 kcal (2) G-P(sol) polarization free energy of solvation -64.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds