Wall clock time and date at job start Mon Mar 30 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47298 * 2 1 4 4 N 1.30503 * 125.64757 * 270.16998 * 3 2 1 5 5 C 1.34132 * 109.25579 * 180.29064 * 4 3 2 6 6 C 1.50695 * 125.98946 * 179.72401 * 5 4 3 7 7 H 1.09000 * 109.47329 * 185.00313 * 6 5 4 8 8 C 1.53000 * 109.47429 * 305.00619 * 6 5 4 9 9 N 1.46900 * 109.46898 * 65.00852 * 6 5 4 10 10 C 1.34669 * 108.01768 * 359.73289 * 5 4 3 11 11 N 1.35042 * 125.65478 * 90.00104 * 3 2 1 12 12 C 1.46500 * 126.39313 * 359.97438 * 11 3 2 13 13 C 1.52997 * 109.47473 * 84.71557 * 12 11 3 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99923 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00006 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46794 * 89.99626 * 19 17 15 21 21 H 1.48502 * 109.47140 * 209.99610 * 19 17 15 22 22 H 1.48501 * 109.46982 * 329.99723 * 19 17 15 23 23 H 1.08999 * 109.47028 * 59.99954 * 1 2 3 24 24 H 1.08999 * 109.47361 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47047 * 300.00344 * 1 2 3 26 26 H 1.08998 * 109.47047 * 239.99656 * 2 1 3 27 27 H 1.08999 * 109.47028 * 120.00046 * 2 1 3 28 28 H 1.09002 * 109.46809 * 299.99890 * 8 6 5 29 29 H 1.09002 * 109.47081 * 60.00107 * 8 6 5 30 30 H 1.09003 * 109.47061 * 180.02562 * 8 6 5 31 31 H 1.00897 * 111.00470 * 56.04628 * 9 6 5 32 32 H 1.00900 * 110.99810 * 179.97438 * 9 6 5 33 33 H 1.07997 * 126.59117 * 179.97438 * 10 5 4 34 34 H 1.09002 * 109.47129 * 324.71300 * 12 11 3 35 35 H 1.08998 * 109.46845 * 204.72107 * 12 11 3 36 36 H 1.09002 * 109.47153 * 59.99757 * 13 12 11 37 37 H 1.09001 * 109.46832 * 299.99948 * 13 12 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 39 39 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 40 40 H 0.97000 * 119.99684 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1389 -1.0605 5 6 2.7190 3.3496 -0.6820 6 6 3.1219 4.4731 -1.6019 7 1 3.5160 5.3013 -1.0129 8 6 4.1983 3.9784 -2.5702 9 7 1.9502 4.9272 -2.3626 10 6 2.7338 3.3849 0.6642 11 7 2.2948 2.1629 1.0973 12 6 2.1438 1.7374 2.4910 13 6 3.4030 0.9907 2.9356 14 6 3.2449 0.5458 4.3909 15 6 4.4851 -0.1901 4.8287 16 1 5.3041 -0.3265 4.1380 17 6 4.5744 -0.6885 6.1111 18 7 5.6564 -1.3312 6.4929 19 14 3.1579 -0.4521 7.3058 20 1 2.2186 -1.5966 7.1924 21 1 3.6861 -0.3806 8.6919 22 1 2.4431 0.8089 6.9828 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.0677 3.6415 -2.0057 29 1 3.8042 3.1502 -3.1592 30 1 4.4900 4.7913 -3.2353 31 1 1.2005 5.1987 -1.7442 32 1 2.1945 5.6813 -2.9870 33 1 3.0346 4.2173 1.2830 34 1 1.2804 1.0776 2.5779 35 1 1.9975 2.6124 3.1242 36 1 4.2663 1.6505 2.8486 37 1 3.5492 0.1157 2.3023 38 1 3.0985 1.4206 5.0245 39 1 2.3818 -0.1140 4.4774 40 1 5.7193 -1.6815 7.3953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304218461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:13 Heat of formation + Delta-G solvation = 31.891981 kcal Electronic energy + Delta-G solvation = -18351.994989 eV Core-core repulsion = 15587.649193 eV Total energy + Delta-G solvation = -2764.345796 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.97626 -36.37356 -34.98817 -33.50345 -32.92295 -31.15275 -29.16659 -28.28360 -27.10287 -24.07385 -23.51393 -22.16383 -20.45178 -19.89816 -19.28672 -16.99389 -16.39102 -15.71488 -15.40806 -14.92330 -14.76068 -14.33058 -14.18757 -13.95849 -13.61057 -13.22550 -12.83552 -12.48395 -12.14587 -12.03158 -11.89332 -11.80311 -11.56300 -11.39928 -11.23887 -11.06973 -10.92212 -10.25463 -10.10159 -9.90581 -9.59794 -9.36840 -9.10929 -8.70865 -8.64527 -8.07268 -6.14004 -4.13734 2.24317 3.04007 3.22122 3.25843 3.30265 3.31310 4.34919 4.45112 4.56460 4.88151 4.90080 5.07913 5.18021 5.19747 5.28243 5.30978 5.39268 5.41886 5.59041 5.61242 5.75483 5.84714 5.88827 5.91472 6.09332 6.13867 6.19318 6.32003 6.35018 6.61370 6.61926 6.90440 7.07725 7.12446 7.20180 7.38253 7.47976 7.65751 8.39102 8.42162 8.90129 9.46957 10.99316 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.028116 B = 0.004492 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.624785 B = 6232.106597 C = 6646.743177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C 0.208 3.792 4 N -0.470 5.470 5 C -0.001 4.001 6 C 0.178 3.822 7 H 0.040 0.960 8 C -0.136 4.136 9 N -0.837 5.837 10 C -0.054 4.054 11 N -0.444 5.444 12 C 0.096 3.904 13 C -0.115 4.115 14 C -0.009 4.009 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.339 0.661 32 H 0.337 0.663 33 H 0.167 0.833 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 10.036 -12.923 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.055 4.055 4 N -0.188 5.188 5 C -0.132 4.132 6 C 0.066 3.934 7 H 0.058 0.942 8 C -0.194 4.194 9 N -0.368 5.368 10 C -0.189 4.189 11 N -0.124 5.124 12 C -0.025 4.025 13 C -0.153 4.153 14 C -0.047 4.047 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.184 0.816 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.033 0.967 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.251 8.895 -13.712 18.781 hybrid contribution -0.288 1.320 2.272 2.643 sum -9.539 10.215 -11.441 18.062 Atomic orbital electron populations 1.21711 0.94299 1.02025 1.02152 1.19977 0.96123 0.87668 1.04293 1.23213 1.04438 0.96534 0.81304 1.70060 1.17514 1.03284 1.27936 1.20279 1.07386 0.94892 0.90640 1.19397 0.90466 0.91727 0.91769 0.94199 1.21710 0.97286 1.01591 0.98857 1.58617 1.09739 1.43981 1.24418 1.22407 1.09929 0.90546 0.96007 1.45547 1.47527 1.11302 1.08021 1.22263 1.01439 1.00925 0.77920 1.21861 0.94566 0.99279 0.99594 1.19516 0.97993 0.96394 0.90837 1.21052 1.01561 1.35219 0.98380 0.91006 1.25030 0.95707 0.94509 0.98124 1.69909 1.27541 1.37420 1.18995 0.86776 0.82842 0.79126 0.80503 1.20165 1.21260 1.19097 0.92093 0.91763 0.93044 0.88983 0.89848 0.92446 0.91070 0.93202 0.84856 0.85061 0.81597 0.89369 0.89447 0.91987 0.91907 0.96418 0.96741 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.04 -0.54 6.09 -27.89 -0.17 -0.71 16 3 C 0.21 3.24 7.16 -155.41 -1.11 2.13 16 4 N -0.47 -7.81 11.23 -7.07 -0.08 -7.89 16 5 C 0.00 -0.02 5.87 -82.85 -0.49 -0.50 16 6 C 0.18 2.13 3.85 -68.87 -0.26 1.87 16 7 H 0.04 0.42 8.11 -51.93 -0.42 0.00 16 8 C -0.14 -1.60 9.46 37.16 0.35 -1.25 16 9 N -0.84 -9.02 9.24 -5.66 -0.05 -9.07 16 10 C -0.05 -0.77 11.46 -16.56 -0.19 -0.96 16 11 N -0.44 -6.71 2.75 -113.91 -0.31 -7.02 16 12 C 0.10 1.42 5.67 -4.04 -0.02 1.40 16 13 C -0.11 -2.12 5.48 -26.73 -0.15 -2.27 16 14 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 15 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 19 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.08 1.09 7.34 -51.93 -0.38 0.70 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.34 3.43 8.99 -39.29 -0.35 3.08 16 32 H 0.34 2.78 9.04 -39.29 -0.36 2.43 16 33 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.09 1.19 7.94 -51.93 -0.41 0.78 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.20 7.64 -51.93 -0.40 0.80 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -31.79 330.94 -8.47 -40.26 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.90 Total: 3.85 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.22 Total: -14.85 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.33 Total: -50.49 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.79 -8.47 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304218461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.151 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds