Wall clock time and date at job start Mon Mar 30 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47298 * 2 1 4 4 N 1.30503 * 125.64757 * 270.16998 * 3 2 1 5 5 C 1.34132 * 109.25579 * 180.29064 * 4 3 2 6 6 C 1.50695 * 125.98946 * 179.72401 * 5 4 3 7 7 H 1.09000 * 109.47329 * 185.00313 * 6 5 4 8 8 C 1.53000 * 109.47429 * 305.00619 * 6 5 4 9 9 N 1.46900 * 109.46898 * 65.00852 * 6 5 4 10 10 C 1.34669 * 108.01768 * 359.73289 * 5 4 3 11 11 N 1.35042 * 125.65478 * 90.00104 * 3 2 1 12 12 C 1.46500 * 126.39313 * 359.97438 * 11 3 2 13 13 C 1.52997 * 109.47473 * 84.71557 * 12 11 3 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99923 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00006 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46794 * 89.99626 * 19 17 15 21 21 H 1.48502 * 109.47140 * 209.99610 * 19 17 15 22 22 H 1.48501 * 109.46982 * 329.99723 * 19 17 15 23 23 H 1.08999 * 109.47028 * 59.99954 * 1 2 3 24 24 H 1.08999 * 109.47361 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47047 * 300.00344 * 1 2 3 26 26 H 1.08998 * 109.47047 * 239.99656 * 2 1 3 27 27 H 1.08999 * 109.47028 * 120.00046 * 2 1 3 28 28 H 1.09002 * 109.46809 * 299.99890 * 8 6 5 29 29 H 1.09002 * 109.47081 * 60.00107 * 8 6 5 30 30 H 1.09003 * 109.47061 * 180.02562 * 8 6 5 31 31 H 1.00897 * 111.00470 * 56.04628 * 9 6 5 32 32 H 1.00900 * 110.99810 * 179.97438 * 9 6 5 33 33 H 1.07997 * 126.59117 * 179.97438 * 10 5 4 34 34 H 1.09002 * 109.47129 * 324.71300 * 12 11 3 35 35 H 1.08998 * 109.46845 * 204.72107 * 12 11 3 36 36 H 1.09002 * 109.47153 * 59.99757 * 13 12 11 37 37 H 1.09001 * 109.46832 * 299.99948 * 13 12 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 39 39 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 40 40 H 0.97000 * 119.99684 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1389 -1.0605 5 6 2.7190 3.3496 -0.6820 6 6 3.1219 4.4731 -1.6019 7 1 3.5160 5.3013 -1.0129 8 6 4.1983 3.9784 -2.5702 9 7 1.9502 4.9272 -2.3626 10 6 2.7338 3.3849 0.6642 11 7 2.2948 2.1629 1.0973 12 6 2.1438 1.7374 2.4910 13 6 3.4030 0.9907 2.9356 14 6 3.2449 0.5458 4.3909 15 6 4.4851 -0.1901 4.8287 16 1 5.3041 -0.3265 4.1380 17 6 4.5744 -0.6885 6.1111 18 7 5.6564 -1.3312 6.4929 19 14 3.1579 -0.4521 7.3058 20 1 2.2186 -1.5966 7.1924 21 1 3.6861 -0.3806 8.6919 22 1 2.4431 0.8089 6.9828 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.0677 3.6415 -2.0057 29 1 3.8042 3.1502 -3.1592 30 1 4.4900 4.7913 -3.2353 31 1 1.2005 5.1987 -1.7442 32 1 2.1945 5.6813 -2.9870 33 1 3.0346 4.2173 1.2830 34 1 1.2804 1.0776 2.5779 35 1 1.9975 2.6124 3.1242 36 1 4.2663 1.6505 2.8486 37 1 3.5492 0.1157 2.3023 38 1 3.0985 1.4206 5.0245 39 1 2.3818 -0.1140 4.4774 40 1 5.7193 -1.6815 7.3953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304218461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:13 Heat of formation + Delta-G solvation = 11.222943 kcal Electronic energy + Delta-G solvation = -18352.891266 eV Core-core repulsion = 15587.649193 eV Total energy + Delta-G solvation = -2765.242073 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.09464 -37.47353 -36.34241 -34.73334 -34.46987 -32.79138 -30.09713 -29.46135 -28.58888 -25.31074 -24.82831 -23.27154 -22.14203 -20.95505 -20.42129 -18.95276 -17.59484 -16.76159 -16.44502 -16.24482 -16.07414 -15.83287 -15.29016 -15.11327 -14.84483 -14.51122 -14.27880 -13.93686 -13.50196 -13.27468 -13.05430 -12.80916 -12.72707 -12.65023 -12.41514 -12.30127 -12.06103 -11.92198 -11.83353 -11.60675 -11.41979 -10.78109 -10.76240 -10.37842 -9.52541 -9.17177 -8.30540 -6.36586 1.12038 1.37752 1.39834 1.51094 1.91737 2.14449 2.35862 3.05230 3.43741 3.67135 3.80441 3.86433 4.04556 4.06701 4.23965 4.32927 4.35800 4.39921 4.47387 4.56741 4.67883 4.73614 4.80087 4.92769 4.97533 4.98417 5.02012 5.12061 5.29621 5.36211 5.39892 5.42590 5.55404 5.62088 5.85190 6.22555 6.27657 6.36954 6.71144 6.72044 7.26799 7.28360 8.86626 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.028116 B = 0.004492 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.624785 B = 6232.106597 C = 6646.743177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 C 0.195 3.805 4 N -0.499 5.499 5 C -0.014 4.014 6 C 0.177 3.823 7 H 0.060 0.940 8 C -0.132 4.132 9 N -0.845 5.845 10 C -0.061 4.061 11 N -0.448 5.448 12 C 0.107 3.893 13 C -0.103 4.103 14 C -0.006 4.006 15 C -0.537 4.537 16 H 0.023 0.977 17 C 0.002 3.998 18 N -0.954 5.954 19 Si 0.955 3.045 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.238 1.238 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.343 0.657 32 H 0.351 0.649 33 H 0.191 0.809 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.030 0.970 39 H 0.031 0.969 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 11.529 -12.502 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 C -0.068 4.068 4 N -0.218 5.218 5 C -0.144 4.144 6 C 0.065 3.935 7 H 0.078 0.922 8 C -0.190 4.190 9 N -0.377 5.377 10 C -0.196 4.196 11 N -0.129 5.129 12 C -0.014 4.014 13 C -0.142 4.142 14 C -0.044 4.044 15 C -0.575 4.575 16 H 0.042 0.958 17 C -0.195 4.195 18 N -0.595 5.595 19 Si 0.778 3.222 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.161 1.161 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.166 0.834 33 H 0.208 0.792 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.656 10.417 -13.330 20.544 hybrid contribution 0.582 0.837 2.035 2.276 sum -11.075 11.253 -11.295 19.413 Atomic orbital electron populations 1.21651 0.92657 1.03185 1.01825 1.20072 0.97486 0.86458 1.04174 1.23674 1.04382 0.97349 0.81395 1.70059 1.18526 1.04393 1.28813 1.20804 1.07025 0.95063 0.91534 1.19467 0.90784 0.91471 0.91735 0.92228 1.21655 0.96903 1.01552 0.98876 1.58542 1.09550 1.44924 1.24720 1.22879 1.09433 0.90934 0.96333 1.45573 1.47825 1.11592 1.07915 1.22118 0.99550 1.01689 0.78081 1.21623 0.96237 0.98895 0.97411 1.19440 0.95598 0.96334 0.92987 1.21448 1.02511 1.35708 0.97847 0.95822 1.26103 0.98902 0.94023 1.00451 1.70087 1.30418 1.39203 1.19753 0.85587 0.78959 0.80583 0.77077 1.18921 1.21418 1.16058 0.92860 0.89860 0.92827 0.89022 0.90018 0.93197 0.93477 0.90828 0.84417 0.83441 0.79219 0.87578 0.87326 0.93641 0.93330 0.95160 0.95062 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.89 71.98 0.71 -2.05 16 2 C -0.04 -1.08 6.09 29.85 0.18 -0.89 16 3 C 0.19 5.90 7.16 138.13 0.99 6.88 16 4 N -0.50 -16.37 11.23 -176.29 -1.98 -18.35 16 5 C -0.01 -0.41 5.87 41.39 0.24 -0.16 16 6 C 0.18 3.96 3.85 44.17 0.17 4.13 16 7 H 0.06 1.10 8.11 -2.39 -0.02 1.08 16 8 C -0.13 -2.97 9.46 71.98 0.68 -2.29 16 9 N -0.84 -16.81 9.24 -171.81 -1.59 -18.40 16 10 C -0.06 -1.66 11.46 83.09 0.95 -0.71 16 11 N -0.45 -12.79 2.75 -514.30 -1.41 -14.21 16 12 C 0.11 2.88 5.67 86.38 0.49 3.37 16 13 C -0.10 -3.72 5.48 30.59 0.17 -3.55 16 14 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 15 C -0.54 -30.16 9.66 25.60 0.25 -29.91 16 16 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 17 C 0.00 0.10 5.47 84.65 0.46 0.57 16 18 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 19 Si 0.96 42.01 27.47 68.60 1.88 43.89 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.24 -9.29 6.54 99.48 0.65 -8.63 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 2.05 7.34 -2.39 -0.02 2.04 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.34 6.36 8.99 -89.70 -0.81 5.55 16 32 H 0.35 5.11 9.04 -89.69 -0.81 4.30 16 33 H 0.19 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.11 2.50 7.94 -2.39 -0.02 2.48 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.86 7.64 -2.39 -0.02 1.84 16 38 H 0.03 1.22 7.20 -2.39 -0.02 1.21 16 39 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -70.32 330.94 1.97 -68.35 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.65 Total: 22.49 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 5.42 Total: -24.74 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -4.68 Total: -109.99 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.88 Total: 43.89 kcal Total: -70.32 1.97 -68.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304218461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.576 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds