Wall clock time and date at job start Mon Mar 30 2020 06:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46758 * 2 1 4 4 H 1.08997 * 109.47082 * 54.99810 * 3 2 1 5 5 C 1.53003 * 109.46990 * 294.99807 * 3 2 1 6 6 N 1.46493 * 109.46942 * 175.00357 * 3 2 1 7 7 N 1.40078 * 126.07576 * 59.68663 * 6 3 2 8 8 C 1.30859 * 108.36266 * 180.26336 * 7 6 3 9 9 C 1.40223 * 108.36578 * 0.02562 * 8 7 6 10 10 N 1.40793 * 126.06580 * 179.97438 * 9 8 7 11 11 C 1.46499 * 120.00596 * 0.02562 * 10 9 8 12 12 H 1.09005 * 109.46863 * 325.00331 * 11 10 9 13 13 C 1.53004 * 109.47150 * 84.99699 * 11 10 9 14 14 C 1.50694 * 109.47502 * 204.99843 * 11 10 9 15 15 H 1.08000 * 119.99901 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00349 * 179.97438 * 14 11 10 17 17 N 1.31522 * 119.99686 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00459 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47080 * 59.99829 * 18 16 14 20 20 H 1.48502 * 109.47169 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47120 * 300.00391 * 18 16 14 22 22 C 1.35701 * 107.86344 * 359.97438 * 9 8 7 23 23 C 1.50702 * 126.22420 * 180.02562 * 22 9 8 24 24 H 1.09003 * 109.47229 * 299.99542 * 1 2 3 25 25 H 1.08994 * 109.47115 * 60.00157 * 1 2 3 26 26 H 1.09008 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46885 * 239.99926 * 2 1 3 28 28 H 1.08994 * 109.47115 * 119.99843 * 2 1 3 29 29 H 1.09008 * 109.46867 * 180.02562 * 5 3 2 30 30 H 1.08994 * 109.47572 * 300.00600 * 5 3 2 31 31 H 1.09002 * 109.47189 * 60.00792 * 5 3 2 32 32 H 1.07998 * 125.81477 * 179.97438 * 8 7 6 33 33 H 0.97005 * 120.00045 * 179.97438 * 10 9 8 34 34 H 1.09002 * 109.47257 * 180.02562 * 13 11 10 35 35 H 1.08998 * 109.47111 * 300.00376 * 13 11 10 36 36 H 1.08998 * 109.46859 * 60.00175 * 13 11 10 37 37 H 0.97005 * 119.99849 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.46848 * 269.95427 * 23 22 9 39 39 H 1.08995 * 109.46809 * 29.95607 * 23 22 9 40 40 H 1.08998 * 109.47197 * 149.95845 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 7 3.4999 1.4443 0.1203 7 7 4.4016 0.8458 -0.7690 8 6 5.6157 1.0533 -0.3271 9 6 5.5329 1.7921 0.8618 10 7 6.6188 2.2194 1.6495 11 6 7.9892 1.8959 1.2453 12 1 8.0069 0.9121 0.7762 13 6 8.4883 2.9447 0.2493 14 6 8.8828 1.8901 2.4586 15 1 8.4712 2.1063 3.4334 16 6 10.2259 1.6089 2.3244 17 7 10.7272 1.3461 1.1372 18 14 11.3335 1.6010 3.8286 19 1 10.8486 0.5830 4.7950 20 1 12.7226 1.2731 3.4187 21 1 11.3097 2.9412 4.4678 22 6 4.2203 2.0220 1.1184 23 6 3.6625 2.7799 2.2955 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 1.9989 3.1541 -1.3076 30 1 2.0697 1.5875 -2.1492 31 1 0.5488 2.1252 -1.3969 32 1 6.5263 0.7128 -0.7975 33 1 6.4596 2.7288 2.4596 34 1 9.5078 2.7038 -0.0518 35 1 7.8419 2.9489 -0.6283 36 1 8.4705 3.9285 0.7183 37 1 11.6722 1.1486 1.0427 38 1 3.4798 2.0893 3.1188 39 1 4.3777 3.5396 2.6104 40 1 2.7263 3.2588 2.0086 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309688052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:10 Heat of formation + Delta-G solvation = 61.354162 kcal Electronic energy + Delta-G solvation = -18675.300758 eV Core-core repulsion = 15912.232538 eV Total energy + Delta-G solvation = -2763.068220 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56677 -36.52985 -35.16300 -32.57031 -31.90899 -30.43520 -28.75365 -27.59801 -25.65008 -25.07039 -24.43886 -21.93950 -20.66724 -19.31130 -18.69558 -16.55254 -16.34175 -15.22699 -14.93378 -14.77809 -14.58466 -13.88535 -13.53702 -13.26380 -12.93446 -12.61647 -12.50379 -12.26027 -12.12805 -11.91033 -11.80964 -11.62180 -11.50474 -11.11626 -10.95162 -10.92494 -10.84861 -10.63199 -10.19925 -10.09701 -9.98119 -9.12509 -8.88258 -8.55613 -8.38996 -6.09314 -5.98094 -4.12435 2.45846 2.98174 3.29900 3.34643 3.36810 3.73329 4.36228 4.53828 4.81779 4.92218 4.97419 5.15511 5.21700 5.26974 5.32190 5.41107 5.46962 5.60978 5.66265 5.83321 5.85189 5.87790 5.91457 6.10761 6.15512 6.20753 6.32564 6.62327 6.85551 7.07413 7.15185 7.25808 7.56970 7.70009 7.80429 7.99170 8.22443 8.35321 8.62696 8.93394 9.18388 9.55064 11.00304 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.041954 B = 0.004471 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.229765 B = 6260.935686 C = 6433.257309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.173 3.827 4 H 0.092 0.908 5 C -0.161 4.161 6 N -0.374 5.374 7 N -0.282 5.282 8 C 0.010 3.990 9 C 0.101 3.899 10 N -0.729 5.729 11 C 0.282 3.718 12 H 0.031 0.969 13 C -0.151 4.151 14 C -0.524 4.524 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.049 4.049 23 C -0.066 4.066 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.177 0.823 33 H 0.384 0.616 34 H 0.085 0.915 35 H 0.009 0.991 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.292 1.016 -1.304 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.070 3.930 4 H 0.110 0.890 5 C -0.219 4.219 6 N -0.165 5.165 7 N -0.105 5.105 8 C -0.179 4.179 9 C -0.010 4.010 10 N -0.362 5.362 11 C 0.178 3.822 12 H 0.049 0.951 13 C -0.210 4.210 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.176 4.176 23 C -0.125 4.125 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.194 0.806 33 H 0.217 0.783 34 H 0.104 0.896 35 H 0.028 0.972 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.732 0.377 -2.410 17.899 hybrid contribution 1.231 0.548 1.687 2.159 sum -16.502 0.925 -0.723 16.543 Atomic orbital electron populations 1.21804 0.95042 1.02045 1.01912 1.21869 0.95769 0.95861 1.03534 1.21009 0.75641 0.97090 0.99214 0.88986 1.22178 1.01261 1.01006 0.97451 1.48007 1.04554 1.45063 1.18855 1.76994 0.98649 1.19310 1.15514 1.23531 0.95748 1.02252 0.96355 1.17703 0.87495 1.01266 0.94554 1.44686 1.03159 1.61919 1.26432 1.18453 0.76302 0.93618 0.93783 0.95126 1.22195 1.02556 0.98949 0.97291 1.21217 0.93168 1.48457 0.93465 0.92372 1.24866 0.97855 0.94956 0.96092 1.69881 1.13697 1.47185 1.21894 0.86555 0.79475 0.78491 0.82835 1.20272 1.21226 1.20279 1.19966 0.90706 1.10147 0.96824 1.20044 1.00206 0.98506 0.93700 0.92659 0.92251 0.92356 0.90687 0.91550 0.92326 0.91288 0.91228 0.80574 0.78285 0.89600 0.97162 0.95563 0.92714 0.91957 0.90912 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.84 16 2 C -0.13 -1.46 5.66 -26.73 -0.15 -1.61 16 3 C 0.17 2.11 3.13 -67.93 -0.21 1.90 16 4 H 0.09 0.97 6.72 -51.93 -0.35 0.62 16 5 C -0.16 -1.75 9.21 37.16 0.34 -1.41 16 6 N -0.37 -6.16 3.31 -50.36 -0.17 -6.33 16 7 N -0.28 -5.35 12.42 30.70 0.38 -4.97 16 8 C 0.01 0.20 11.15 -17.22 -0.19 0.01 16 9 C 0.10 2.04 6.90 -83.90 -0.58 1.46 16 10 N -0.73 -15.83 5.30 -53.45 -0.28 -16.11 16 11 C 0.28 7.05 2.57 -69.08 -0.18 6.87 16 12 H 0.03 0.84 7.16 -51.93 -0.37 0.47 16 13 C -0.15 -3.70 9.28 37.16 0.34 -3.35 16 14 C -0.52 -14.11 8.73 -34.44 -0.30 -14.41 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 18 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.05 -0.85 6.98 -81.66 -0.57 -1.42 16 23 C -0.07 -0.89 9.77 36.01 0.35 -0.53 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 26 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 32 H 0.18 3.56 7.45 -52.49 -0.39 3.17 16 33 H 0.38 7.85 7.93 -40.82 -0.32 7.53 16 34 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 40 H 0.06 0.63 7.14 -51.93 -0.37 0.26 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -29.16 324.10 -7.00 -36.16 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.54 Total: 6.37 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.88 Total: -11.69 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.56 Total: -51.64 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.16 -7.00 -36.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309688052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.514 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds