Wall clock time and date at job start Mon Mar 30 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 H 1.09000 * 109.46980 * 305.00086 * 3 2 1 5 5 C 1.53004 * 109.46949 * 64.99850 * 3 2 1 6 6 N 1.46499 * 109.47233 * 184.99724 * 3 2 1 7 7 N 1.40080 * 126.07222 * 299.97682 * 6 3 2 8 8 C 1.30862 * 108.35921 * 179.77945 * 7 6 3 9 9 C 1.40218 * 108.36578 * 0.37834 * 8 7 6 10 10 N 1.40798 * 126.07149 * 179.88097 * 9 8 7 11 11 C 1.46506 * 119.99576 * 359.69103 * 10 9 8 12 12 H 1.08995 * 109.46882 * 324.99702 * 11 10 9 13 13 C 1.52990 * 109.46922 * 84.99978 * 11 10 9 14 14 C 1.50696 * 109.46918 * 205.00294 * 11 10 9 15 15 H 1.08001 * 119.99729 * 265.53692 * 14 11 10 16 16 C 1.37878 * 120.00291 * 85.53198 * 14 11 10 17 17 N 1.31510 * 119.99640 * 352.89449 * 16 14 11 18 18 Si 1.86803 * 120.00021 * 172.89780 * 16 14 11 19 19 H 1.48501 * 109.47105 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46857 * 299.99922 * 18 16 14 21 21 H 1.48496 * 109.47093 * 59.99790 * 18 16 14 22 22 C 1.35713 * 107.86196 * 359.61519 * 9 8 7 23 23 C 1.50699 * 126.22077 * 180.24319 * 22 9 8 24 24 H 1.09005 * 109.46686 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47140 * 299.99870 * 1 2 3 26 26 H 1.09002 * 109.46685 * 60.00036 * 1 2 3 27 27 H 1.08997 * 109.47763 * 239.99789 * 2 1 3 28 28 H 1.09002 * 109.47204 * 119.99878 * 2 1 3 29 29 H 1.09000 * 109.47170 * 300.00518 * 5 3 2 30 30 H 1.09008 * 109.47048 * 59.99646 * 5 3 2 31 31 H 1.08993 * 109.47082 * 180.02562 * 5 3 2 32 32 H 1.07998 * 125.81558 * 180.24790 * 8 7 6 33 33 H 0.96997 * 120.00419 * 179.69523 * 10 9 8 34 34 H 1.09006 * 109.46820 * 176.31422 * 13 11 10 35 35 H 1.08998 * 109.47431 * 296.31637 * 13 11 10 36 36 H 1.09004 * 109.47341 * 56.31968 * 13 11 10 37 37 H 0.96992 * 120.00662 * 354.56396 * 17 16 14 38 38 H 1.08999 * 109.46834 * 89.97921 * 23 22 9 39 39 H 1.08998 * 109.47299 * 209.98030 * 23 22 9 40 40 H 1.09005 * 109.47613 * 329.98233 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 7 3.5000 1.4443 -0.1203 7 7 4.4019 0.8514 0.7726 8 6 5.6160 1.0577 0.3299 9 6 5.5333 1.7979 -0.8581 10 7 6.6192 2.2272 -1.6447 11 6 7.9900 1.9093 -1.2368 12 1 8.0596 1.9307 -0.1493 13 6 8.3628 0.5150 -1.7444 14 6 8.9364 2.9263 -1.8207 15 1 9.4343 2.7250 -2.7578 16 6 9.1667 4.1137 -1.1589 17 7 8.4588 4.4208 -0.0940 18 14 10.4840 5.2862 -1.7750 19 1 10.5334 6.4815 -0.8952 20 1 11.8026 4.6033 -1.7559 21 1 10.1636 5.7054 -3.1630 22 6 4.2203 2.0222 -1.1182 23 6 3.6623 2.7745 -2.2987 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1252 1.3970 30 1 2.0698 1.5874 2.1492 31 1 1.9981 3.1543 1.3072 32 1 6.5266 0.7176 0.8006 33 1 6.4599 2.7333 -2.4566 34 1 9.4035 0.3049 -1.4978 35 1 7.7202 -0.2276 -1.2715 36 1 8.2303 0.4745 -2.8256 37 1 7.7229 3.8515 0.1801 38 1 3.4851 2.0810 -3.1207 39 1 2.7232 3.2499 -2.0157 40 1 4.3749 3.5368 -2.6137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309688054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:11 Heat of formation + Delta-G solvation = 53.916352 kcal Electronic energy + Delta-G solvation = -18907.555511 eV Core-core repulsion = 16144.164763 eV Total energy + Delta-G solvation = -2763.390748 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49666 -36.52191 -35.28865 -32.34842 -31.83104 -30.49902 -28.99215 -27.65157 -25.57532 -24.65987 -24.26933 -21.95315 -20.84058 -19.22209 -18.80223 -16.93120 -16.24529 -15.29282 -14.88486 -14.73736 -14.00854 -13.77494 -13.59077 -13.28604 -13.19216 -12.83196 -12.50662 -12.33054 -12.19437 -11.89339 -11.79637 -11.66088 -11.49543 -11.02162 -10.97234 -10.87334 -10.82954 -10.74788 -10.21981 -10.07793 -9.94240 -8.96527 -8.57487 -8.50682 -8.47852 -6.43328 -5.89731 -4.22670 2.52075 3.03729 3.40625 3.41978 3.61261 3.80704 4.47085 4.57038 4.83212 4.86770 5.00282 5.18462 5.26018 5.36730 5.45928 5.51971 5.55003 5.64999 5.71589 5.86036 5.88440 5.92420 5.95022 6.14354 6.22124 6.24642 6.36848 6.41131 6.62194 6.71180 6.72585 7.01372 7.27004 7.33487 7.76275 8.01406 8.37783 8.41783 8.74000 8.89862 9.25600 9.57919 10.95399 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.005039 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.922747 B = 5555.809230 C = 5742.627103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.173 3.827 4 H 0.092 0.908 5 C -0.161 4.161 6 N -0.372 5.372 7 N -0.283 5.283 8 C 0.004 3.996 9 C 0.099 3.901 10 N -0.724 5.724 11 C 0.256 3.744 12 H 0.034 0.966 13 C -0.145 4.145 14 C -0.606 4.606 15 H 0.051 0.949 16 C 0.032 3.968 17 N -0.893 5.893 18 Si 1.066 2.934 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.288 1.288 22 C -0.051 4.051 23 C -0.065 4.065 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.171 0.829 33 H 0.382 0.618 34 H 0.047 0.953 35 H 0.026 0.974 36 H 0.038 0.962 37 H 0.279 0.721 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 -5.202 -1.427 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.070 3.930 4 H 0.110 0.890 5 C -0.219 4.219 6 N -0.163 5.163 7 N -0.106 5.106 8 C -0.184 4.184 9 C -0.012 4.012 10 N -0.358 5.358 11 C 0.155 3.845 12 H 0.051 0.949 13 C -0.204 4.204 14 C -0.645 4.645 15 H 0.070 0.930 16 C -0.177 4.177 17 N -0.526 5.526 18 Si 0.894 3.106 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.214 1.214 22 C -0.179 4.179 23 C -0.124 4.124 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.188 0.812 33 H 0.216 0.784 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.372 -4.361 -0.053 14.065 hybrid contribution -0.293 -0.885 -1.290 1.592 sum -13.665 -5.246 -1.343 14.699 Atomic orbital electron populations 1.21802 0.95054 1.01982 1.01964 1.21862 0.95761 0.95920 1.03383 1.21005 0.75753 0.96976 0.99244 0.89022 1.22179 1.01200 1.01147 0.97405 1.47985 1.04455 1.45238 1.18663 1.76952 0.98664 1.19692 1.15272 1.23381 0.95588 1.03019 0.96435 1.17931 0.87932 1.00659 0.94697 1.45863 1.02470 1.61061 1.26403 1.18618 0.79136 0.91324 0.95429 0.94860 1.22150 0.99369 0.98894 0.99984 1.22099 1.27505 1.04167 1.10721 0.93024 1.25898 1.00043 0.97448 0.94324 1.70703 1.18498 1.40072 1.23356 0.83609 0.75415 0.76038 0.75584 1.20824 1.21294 1.21423 1.19986 0.90767 1.10261 0.96872 1.20029 1.00272 0.98510 0.93550 0.92399 0.92211 0.92659 0.91664 0.90757 0.91266 0.91322 0.92229 0.81182 0.78372 0.93440 0.95498 0.94298 0.90952 0.92227 0.92641 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 37.16 0.36 -0.91 16 2 C -0.13 -1.52 5.66 -26.73 -0.15 -1.67 16 3 C 0.17 2.28 3.13 -67.93 -0.21 2.06 16 4 H 0.09 1.07 6.71 -51.93 -0.35 0.72 16 5 C -0.16 -1.95 9.21 37.16 0.34 -1.61 16 6 N -0.37 -6.53 3.31 -50.36 -0.17 -6.70 16 7 N -0.28 -5.60 12.42 30.70 0.38 -5.21 16 8 C 0.00 0.09 11.15 -17.22 -0.19 -0.10 16 9 C 0.10 2.10 6.90 -83.89 -0.58 1.52 16 10 N -0.72 -16.41 5.23 -53.45 -0.28 -16.69 16 11 C 0.26 6.28 2.05 -69.09 -0.14 6.14 16 12 H 0.03 0.89 6.19 -51.93 -0.32 0.57 16 13 C -0.14 -3.13 9.48 37.15 0.35 -2.78 16 14 C -0.61 -16.28 8.49 -34.44 -0.29 -16.57 16 15 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 16 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 17 N -0.89 -26.35 13.56 55.43 0.75 -25.60 16 18 Si 1.07 24.33 29.91 -169.99 -5.08 19.24 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.05 -0.96 6.98 -81.67 -0.57 -1.53 16 23 C -0.07 -0.98 9.78 36.01 0.35 -0.63 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.63 6.56 -51.93 -0.34 0.29 16 30 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.17 3.46 7.46 -52.49 -0.39 3.07 16 33 H 0.38 8.59 7.98 -40.82 -0.33 8.26 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.28 8.37 6.93 -40.82 -0.28 8.08 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.71 7.13 -51.93 -0.37 0.34 16 40 H 0.07 1.16 7.61 -51.93 -0.40 0.76 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -29.94 326.08 -6.86 -36.80 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.55 Total: 8.55 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -0.83 Total: -15.31 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.69 Total: -54.20 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.94 -6.86 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309688054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.718 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds