Wall clock time and date at job start Mon Mar 30 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 H 1.09000 * 109.46980 * 305.00086 * 3 2 1 5 5 C 1.53004 * 109.46949 * 64.99850 * 3 2 1 6 6 N 1.46499 * 109.47233 * 184.99724 * 3 2 1 7 7 N 1.40080 * 126.07222 * 299.97682 * 6 3 2 8 8 C 1.30862 * 108.35921 * 179.77945 * 7 6 3 9 9 C 1.40218 * 108.36578 * 0.37834 * 8 7 6 10 10 N 1.40798 * 126.07149 * 179.88097 * 9 8 7 11 11 C 1.46506 * 119.99576 * 359.69103 * 10 9 8 12 12 H 1.08995 * 109.46882 * 324.99702 * 11 10 9 13 13 C 1.52990 * 109.46922 * 84.99978 * 11 10 9 14 14 C 1.50696 * 109.46918 * 205.00294 * 11 10 9 15 15 H 1.08001 * 119.99729 * 265.53692 * 14 11 10 16 16 C 1.37878 * 120.00291 * 85.53198 * 14 11 10 17 17 N 1.31510 * 119.99640 * 352.89449 * 16 14 11 18 18 Si 1.86803 * 120.00021 * 172.89780 * 16 14 11 19 19 H 1.48501 * 109.47105 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46857 * 299.99922 * 18 16 14 21 21 H 1.48496 * 109.47093 * 59.99790 * 18 16 14 22 22 C 1.35713 * 107.86196 * 359.61519 * 9 8 7 23 23 C 1.50699 * 126.22077 * 180.24319 * 22 9 8 24 24 H 1.09005 * 109.46686 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47140 * 299.99870 * 1 2 3 26 26 H 1.09002 * 109.46685 * 60.00036 * 1 2 3 27 27 H 1.08997 * 109.47763 * 239.99789 * 2 1 3 28 28 H 1.09002 * 109.47204 * 119.99878 * 2 1 3 29 29 H 1.09000 * 109.47170 * 300.00518 * 5 3 2 30 30 H 1.09008 * 109.47048 * 59.99646 * 5 3 2 31 31 H 1.08993 * 109.47082 * 180.02562 * 5 3 2 32 32 H 1.07998 * 125.81558 * 180.24790 * 8 7 6 33 33 H 0.96997 * 120.00419 * 179.69523 * 10 9 8 34 34 H 1.09006 * 109.46820 * 176.31422 * 13 11 10 35 35 H 1.08998 * 109.47431 * 296.31637 * 13 11 10 36 36 H 1.09004 * 109.47341 * 56.31968 * 13 11 10 37 37 H 0.96992 * 120.00662 * 354.56396 * 17 16 14 38 38 H 1.08999 * 109.46834 * 89.97921 * 23 22 9 39 39 H 1.08998 * 109.47299 * 209.98030 * 23 22 9 40 40 H 1.09005 * 109.47613 * 329.98233 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 7 3.5000 1.4443 -0.1203 7 7 4.4019 0.8514 0.7726 8 6 5.6160 1.0577 0.3299 9 6 5.5333 1.7979 -0.8581 10 7 6.6192 2.2272 -1.6447 11 6 7.9900 1.9093 -1.2368 12 1 8.0596 1.9307 -0.1493 13 6 8.3628 0.5150 -1.7444 14 6 8.9364 2.9263 -1.8207 15 1 9.4343 2.7250 -2.7578 16 6 9.1667 4.1137 -1.1589 17 7 8.4588 4.4208 -0.0940 18 14 10.4840 5.2862 -1.7750 19 1 10.5334 6.4815 -0.8952 20 1 11.8026 4.6033 -1.7559 21 1 10.1636 5.7054 -3.1630 22 6 4.2203 2.0222 -1.1182 23 6 3.6623 2.7745 -2.2987 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1252 1.3970 30 1 2.0698 1.5874 2.1492 31 1 1.9981 3.1543 1.3072 32 1 6.5266 0.7176 0.8006 33 1 6.4599 2.7333 -2.4566 34 1 9.4035 0.3049 -1.4978 35 1 7.7202 -0.2276 -1.2715 36 1 8.2303 0.4745 -2.8256 37 1 7.7229 3.8515 0.1801 38 1 3.4851 2.0810 -3.1207 39 1 2.7232 3.2499 -2.0157 40 1 4.3749 3.5368 -2.6137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309688054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:11 Heat of formation + Delta-G solvation = 36.059269 kcal Electronic energy + Delta-G solvation = -18908.329852 eV Core-core repulsion = 16144.164763 eV Total energy + Delta-G solvation = -2764.165089 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.99770 -37.89798 -36.85251 -34.19734 -33.26379 -31.92639 -30.34431 -28.99496 -27.12432 -26.49983 -25.47216 -23.40769 -22.43506 -20.72963 -20.22259 -18.84053 -17.69656 -16.74673 -16.17140 -15.97908 -15.71319 -15.49926 -15.11086 -14.93531 -14.47834 -13.96217 -13.85811 -13.62909 -13.35057 -13.14497 -13.12515 -12.88473 -12.76698 -12.70324 -12.59219 -12.37569 -12.13728 -11.95591 -11.87235 -11.74757 -11.40142 -10.77948 -10.62063 -10.41453 -9.95203 -8.61002 -7.56770 -6.40426 1.00817 1.56858 1.62186 1.71700 1.83008 2.17301 2.58714 2.96210 3.46965 3.64783 3.89225 3.94678 4.03926 4.17269 4.29342 4.42149 4.49014 4.56953 4.62627 4.68531 4.74009 4.77175 4.86803 4.87401 4.94727 5.03031 5.08574 5.10539 5.15116 5.21777 5.32761 5.41502 5.42846 5.65894 5.96388 6.24097 6.39103 6.58085 6.83743 7.09608 7.47952 7.51346 8.77029 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.005039 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.922747 B = 5555.809230 C = 5742.627103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.158 3.842 4 H 0.118 0.882 5 C -0.156 4.156 6 N -0.361 5.361 7 N -0.296 5.296 8 C -0.019 4.019 9 C 0.060 3.940 10 N -0.728 5.728 11 C 0.261 3.739 12 H 0.001 0.999 13 C -0.133 4.133 14 C -0.614 4.614 15 H 0.051 0.949 16 C -0.015 4.015 17 N -0.923 5.923 18 Si 1.113 2.887 19 H -0.290 1.290 20 H -0.271 1.271 21 H -0.269 1.269 22 C -0.036 4.036 23 C -0.064 4.064 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.162 0.838 33 H 0.382 0.618 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.502 -5.006 -2.787 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.057 3.943 4 H 0.136 0.864 5 C -0.214 4.214 6 N -0.152 5.152 7 N -0.120 5.120 8 C -0.205 4.205 9 C -0.049 4.049 10 N -0.363 5.363 11 C 0.158 3.842 12 H 0.019 0.981 13 C -0.192 4.192 14 C -0.653 4.653 15 H 0.069 0.931 16 C -0.217 4.217 17 N -0.559 5.559 18 Si 0.935 3.065 19 H -0.215 1.215 20 H -0.196 1.196 21 H -0.194 1.194 22 C -0.165 4.165 23 C -0.123 4.123 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.179 0.821 33 H 0.216 0.784 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.400 -4.205 -1.405 16.025 hybrid contribution 0.149 -1.012 -0.856 1.334 sum -15.251 -5.216 -2.261 16.276 Atomic orbital electron populations 1.21774 0.92068 1.03044 1.03228 1.21793 0.98191 0.94270 1.01995 1.21579 0.73083 0.98677 1.00927 0.86420 1.22153 1.03482 0.99771 0.95952 1.48523 1.05997 1.43264 1.17371 1.76908 0.98572 1.20495 1.16011 1.23345 0.95965 1.04192 0.97016 1.18119 0.88714 1.02705 0.95370 1.45258 1.02122 1.62231 1.26733 1.18412 0.79987 0.92330 0.93485 0.98097 1.21998 0.99604 0.97475 1.00143 1.22404 1.27821 1.04549 1.10521 0.93069 1.27254 1.01341 0.99303 0.93817 1.70830 1.19360 1.40482 1.25200 0.82989 0.73723 0.73990 0.75749 1.21548 1.19612 1.19441 1.20615 0.90217 1.08307 0.97355 1.20165 1.01118 0.98484 0.92507 0.91568 0.91114 0.91158 0.92754 0.92533 0.87521 0.93131 0.93439 0.82073 0.78413 0.93192 0.94652 0.93744 0.92674 0.90043 0.89752 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.67 71.98 0.70 -1.21 16 2 C -0.12 -2.61 5.66 30.60 0.17 -2.44 16 3 C 0.16 3.76 3.13 44.99 0.14 3.90 16 4 H 0.12 2.24 6.71 -2.39 -0.02 2.22 16 5 C -0.16 -3.41 9.21 71.98 0.66 -2.75 16 6 N -0.36 -12.32 3.31 -313.23 -1.04 -13.35 16 7 N -0.30 -11.89 12.42 -56.78 -0.71 -12.59 16 8 C -0.02 -0.81 11.15 85.32 0.95 0.14 16 9 C 0.06 2.62 6.90 37.59 0.26 2.88 16 10 N -0.73 -33.76 5.23 -323.03 -1.69 -35.45 16 11 C 0.26 13.15 2.05 44.24 0.09 13.24 16 12 H 0.00 0.06 6.19 -2.39 -0.01 0.05 16 13 C -0.13 -5.81 9.48 71.98 0.68 -5.13 16 14 C -0.61 -33.42 8.49 25.60 0.22 -33.20 16 15 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 16 C -0.02 -0.85 5.45 84.66 0.46 -0.39 16 17 N -0.92 -56.07 13.56 21.45 0.29 -55.78 16 18 Si 1.11 48.93 29.91 68.60 2.05 50.98 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 C -0.04 -1.30 6.98 41.33 0.29 -1.01 16 23 C -0.06 -1.77 9.78 71.24 0.70 -1.08 16 24 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.07 0.80 6.56 -2.39 -0.02 0.79 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 1.54 6.56 -2.39 -0.02 1.52 16 30 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.16 7.09 7.46 -2.91 -0.02 7.06 16 33 H 0.38 17.41 7.98 -92.71 -0.74 16.67 16 34 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.26 16.50 6.93 -92.71 -0.64 15.86 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 1.84 7.13 -2.39 -0.02 1.82 16 40 H 0.06 1.95 7.61 -2.38 -0.02 1.94 16 Total: -1.00 -66.36 326.08 4.63 -61.73 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.40 Total: 31.53 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 5.32 Total: -27.05 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -3.14 Total: -117.18 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Total: -66.36 4.63 -61.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309688054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.787 kcal (2) G-P(sol) polarization free energy of solvation -66.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds