Wall clock time and date at job start Mon Mar 30 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47310 * 2 1 4 4 H 1.08998 * 109.47333 * 54.99919 * 3 2 1 5 5 C 1.53007 * 109.47024 * 295.00197 * 3 2 1 6 6 N 1.46497 * 109.47273 * 175.00123 * 3 2 1 7 7 N 1.40075 * 126.07142 * 60.02725 * 6 3 2 8 8 C 1.30860 * 108.36213 * 179.73673 * 7 6 3 9 9 C 1.40224 * 108.36573 * 0.37966 * 8 7 6 10 10 N 1.40793 * 126.07130 * 179.88210 * 9 8 7 11 11 C 1.46499 * 119.99930 * 359.68379 * 10 9 8 12 12 H 1.09005 * 109.47241 * 35.00624 * 11 10 9 13 13 C 1.52997 * 109.47413 * 275.00102 * 11 10 9 14 14 C 1.50707 * 109.46794 * 154.99943 * 11 10 9 15 15 H 1.07999 * 120.00178 * 5.42180 * 14 11 10 16 16 C 1.37881 * 119.99627 * 185.13979 * 14 11 10 17 17 N 1.31519 * 120.00111 * 355.41602 * 16 14 11 18 18 Si 1.86803 * 119.99804 * 175.41031 * 16 14 11 19 19 H 1.48493 * 109.46982 * 95.00177 * 18 16 14 20 20 H 1.48501 * 109.46763 * 215.00369 * 18 16 14 21 21 H 1.48498 * 109.46977 * 335.00111 * 18 16 14 22 22 C 1.35711 * 107.85884 * 359.61170 * 9 8 7 23 23 C 1.50708 * 126.22243 * 180.20542 * 22 9 8 24 24 H 1.08997 * 109.47480 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46951 * 300.00026 * 1 2 3 26 26 H 1.09004 * 109.47523 * 59.99815 * 1 2 3 27 27 H 1.09005 * 109.46951 * 239.99974 * 2 1 3 28 28 H 1.09002 * 109.47059 * 120.00420 * 2 1 3 29 29 H 1.08998 * 109.46740 * 299.99478 * 5 3 2 30 30 H 1.08993 * 109.47248 * 60.00000 * 5 3 2 31 31 H 1.09002 * 109.46887 * 179.97438 * 5 3 2 32 32 H 1.07995 * 125.82399 * 180.24061 * 8 7 6 33 33 H 0.97003 * 120.00325 * 179.68635 * 10 9 8 34 34 H 1.09001 * 109.47235 * 174.94472 * 13 11 10 35 35 H 1.08999 * 109.47299 * 294.94972 * 13 11 10 36 36 H 1.09000 * 109.46862 * 54.94240 * 13 11 10 37 37 H 0.96998 * 119.99658 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46649 * 90.02920 * 23 22 9 39 39 H 1.08990 * 109.46909 * 210.02942 * 23 22 9 40 40 H 1.09001 * 109.47042 * 330.03222 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 7 3.5000 1.4441 0.1203 7 7 4.4019 0.8512 -0.7725 8 6 5.6164 1.0664 -0.3354 9 6 5.5333 1.7976 0.8582 10 7 6.6193 2.2281 1.6440 11 6 7.9900 1.9100 1.2362 12 1 8.0595 1.9301 0.1486 13 6 8.3633 0.5164 1.7455 14 6 8.9364 2.9279 1.8189 15 1 8.5680 3.6791 2.5017 16 6 10.2737 2.8965 1.4845 17 7 10.7402 1.9258 0.7297 18 14 11.4228 4.2329 2.1035 19 1 12.0878 3.7756 3.3500 20 1 12.4504 4.5196 1.0706 21 1 10.6434 5.4659 2.3820 22 6 4.2204 2.0220 1.1183 23 6 3.6623 2.7744 2.2988 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0699 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3969 31 1 1.9982 3.1543 -1.3072 32 1 6.5275 0.7351 -0.8113 33 1 6.4601 2.7352 2.4554 34 1 9.3482 0.2429 1.3670 35 1 8.3811 0.5205 2.8354 36 1 7.6263 -0.2072 1.3970 37 1 11.6811 1.9036 0.4949 38 1 3.5704 3.8307 2.0460 39 1 2.6806 2.3749 2.5531 40 1 4.3323 2.6617 3.1512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309688057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:13 Heat of formation + Delta-G solvation = 60.617174 kcal Electronic energy + Delta-G solvation = -18674.323070 eV Core-core repulsion = 15911.222891 eV Total energy + Delta-G solvation = -2763.100179 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56707 -36.53073 -35.15286 -32.55242 -31.90528 -30.45107 -28.77693 -27.59857 -25.65369 -25.06689 -24.44091 -21.94107 -20.66346 -19.31326 -18.69329 -16.57157 -16.35192 -15.22896 -14.87578 -14.76956 -14.61820 -13.93539 -13.49348 -13.30799 -12.86390 -12.61260 -12.47880 -12.29819 -12.15950 -11.87215 -11.84002 -11.67612 -11.40205 -11.16836 -10.97414 -10.93716 -10.83727 -10.61500 -10.23595 -10.09325 -9.97951 -9.10750 -8.89700 -8.55652 -8.39370 -6.10342 -5.97979 -4.12102 2.45900 2.98121 3.28128 3.35350 3.38842 3.73298 4.36571 4.53863 4.81147 4.92155 4.97487 5.15381 5.21485 5.26674 5.31931 5.41124 5.47121 5.61211 5.66786 5.83343 5.84534 5.87522 5.91442 6.10296 6.15609 6.20855 6.32500 6.62303 6.85126 7.05258 7.14966 7.25465 7.56029 7.69863 7.81488 7.94348 8.20661 8.35111 8.62784 8.93946 9.18375 9.55093 11.00353 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.044123 B = 0.004460 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.433814 B = 6276.240097 C = 6452.776949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.173 3.827 4 H 0.092 0.908 5 C -0.161 4.161 6 N -0.374 5.374 7 N -0.282 5.282 8 C 0.010 3.990 9 C 0.101 3.899 10 N -0.729 5.729 11 C 0.281 3.719 12 H 0.033 0.967 13 C -0.147 4.147 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.049 4.049 23 C -0.066 4.066 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.177 0.823 33 H 0.384 0.616 34 H 0.078 0.922 35 H 0.027 0.973 36 H 0.010 0.990 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.450 -1.001 -0.034 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.070 3.930 4 H 0.110 0.890 5 C -0.219 4.219 6 N -0.165 5.165 7 N -0.105 5.105 8 C -0.179 4.179 9 C -0.010 4.010 10 N -0.362 5.362 11 C 0.178 3.822 12 H 0.051 0.949 13 C -0.206 4.206 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.176 4.176 23 C -0.125 4.125 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.194 0.806 33 H 0.217 0.783 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.899 -1.652 -1.137 18.011 hybrid contribution 1.279 1.187 1.252 2.148 sum -16.620 -0.465 0.115 16.626 Atomic orbital electron populations 1.21803 0.95039 1.02036 1.01930 1.21872 0.95775 0.95899 1.03506 1.21010 0.75640 0.97048 0.99257 0.88987 1.22173 1.01253 1.01046 0.97404 1.48005 1.04551 1.45134 1.18778 1.76994 0.98630 1.19456 1.15392 1.23531 0.95730 1.02437 0.96191 1.17704 0.87488 1.01320 0.94507 1.44687 1.03122 1.61895 1.26485 1.18472 0.76400 0.92034 0.95332 0.94913 1.22176 1.01160 0.98064 0.99212 1.21241 0.92813 1.13996 1.28233 0.92327 1.24871 0.97962 0.95820 0.95123 1.69919 1.14606 1.31067 1.36976 0.86498 0.80491 0.82090 0.78404 1.20769 1.21118 1.19886 1.19968 0.90702 1.10155 0.96813 1.20046 1.00068 0.98361 0.93984 0.92363 0.92674 0.92224 0.90684 0.91590 0.91282 0.91237 0.92285 0.80573 0.78303 0.90314 0.95381 0.97085 0.92797 0.91948 0.92562 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.13 -1.45 5.66 -26.74 -0.15 -1.60 16 3 C 0.17 2.11 3.13 -67.93 -0.21 1.89 16 4 H 0.09 0.97 6.72 -51.93 -0.35 0.62 16 5 C -0.16 -1.76 9.21 37.16 0.34 -1.42 16 6 N -0.37 -6.16 3.31 -50.36 -0.17 -6.32 16 7 N -0.28 -5.34 12.42 30.70 0.38 -4.96 16 8 C 0.01 0.20 11.15 -17.22 -0.19 0.01 16 9 C 0.10 2.04 6.90 -83.90 -0.58 1.46 16 10 N -0.73 -15.80 5.30 -53.45 -0.28 -16.08 16 11 C 0.28 7.01 2.52 -69.08 -0.17 6.84 16 12 H 0.03 0.90 7.15 -51.93 -0.37 0.53 16 13 C -0.15 -3.58 9.27 37.16 0.34 -3.24 16 14 C -0.52 -14.09 8.67 -34.44 -0.30 -14.39 16 15 H 0.06 1.55 7.72 -52.49 -0.41 1.14 16 16 C 0.06 1.75 5.36 -17.82 -0.10 1.66 16 17 N -0.89 -24.90 11.58 55.43 0.64 -24.25 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.05 -0.85 6.98 -81.66 -0.57 -1.42 16 23 C -0.07 -0.89 9.78 36.01 0.35 -0.53 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.57 6.56 -51.93 -0.34 0.23 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.18 3.56 7.44 -52.49 -0.39 3.17 16 33 H 0.38 7.83 7.91 -40.82 -0.32 7.51 16 34 H 0.08 2.07 6.45 -51.93 -0.33 1.74 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.63 7.13 -51.93 -0.37 0.25 16 40 H 0.07 0.97 7.61 -51.93 -0.40 0.57 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -29.22 324.62 -6.99 -36.22 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.56 Total: 6.15 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.88 Total: -11.58 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.57 Total: -51.62 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.22 -6.99 -36.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309688057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.832 kcal (2) G-P(sol) polarization free energy of solvation -29.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds