Wall clock time and date at job start Mon Mar 30 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47310 * 2 1 4 4 H 1.08998 * 109.47333 * 54.99919 * 3 2 1 5 5 C 1.53007 * 109.47024 * 295.00197 * 3 2 1 6 6 N 1.46497 * 109.47273 * 175.00123 * 3 2 1 7 7 N 1.40075 * 126.07142 * 60.02725 * 6 3 2 8 8 C 1.30860 * 108.36213 * 179.73673 * 7 6 3 9 9 C 1.40224 * 108.36573 * 0.37966 * 8 7 6 10 10 N 1.40793 * 126.07130 * 179.88210 * 9 8 7 11 11 C 1.46499 * 119.99930 * 359.68379 * 10 9 8 12 12 H 1.09005 * 109.47241 * 35.00624 * 11 10 9 13 13 C 1.52997 * 109.47413 * 275.00102 * 11 10 9 14 14 C 1.50707 * 109.46794 * 154.99943 * 11 10 9 15 15 H 1.07999 * 120.00178 * 5.42180 * 14 11 10 16 16 C 1.37881 * 119.99627 * 185.13979 * 14 11 10 17 17 N 1.31519 * 120.00111 * 355.41602 * 16 14 11 18 18 Si 1.86803 * 119.99804 * 175.41031 * 16 14 11 19 19 H 1.48493 * 109.46982 * 95.00177 * 18 16 14 20 20 H 1.48501 * 109.46763 * 215.00369 * 18 16 14 21 21 H 1.48498 * 109.46977 * 335.00111 * 18 16 14 22 22 C 1.35711 * 107.85884 * 359.61170 * 9 8 7 23 23 C 1.50708 * 126.22243 * 180.20542 * 22 9 8 24 24 H 1.08997 * 109.47480 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46951 * 300.00026 * 1 2 3 26 26 H 1.09004 * 109.47523 * 59.99815 * 1 2 3 27 27 H 1.09005 * 109.46951 * 239.99974 * 2 1 3 28 28 H 1.09002 * 109.47059 * 120.00420 * 2 1 3 29 29 H 1.08998 * 109.46740 * 299.99478 * 5 3 2 30 30 H 1.08993 * 109.47248 * 60.00000 * 5 3 2 31 31 H 1.09002 * 109.46887 * 179.97438 * 5 3 2 32 32 H 1.07995 * 125.82399 * 180.24061 * 8 7 6 33 33 H 0.97003 * 120.00325 * 179.68635 * 10 9 8 34 34 H 1.09001 * 109.47235 * 174.94472 * 13 11 10 35 35 H 1.08999 * 109.47299 * 294.94972 * 13 11 10 36 36 H 1.09000 * 109.46862 * 54.94240 * 13 11 10 37 37 H 0.96998 * 119.99658 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46649 * 90.02920 * 23 22 9 39 39 H 1.08990 * 109.46909 * 210.02942 * 23 22 9 40 40 H 1.09001 * 109.47042 * 330.03222 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 7 3.5000 1.4441 0.1203 7 7 4.4019 0.8512 -0.7725 8 6 5.6164 1.0664 -0.3354 9 6 5.5333 1.7976 0.8582 10 7 6.6193 2.2281 1.6440 11 6 7.9900 1.9100 1.2362 12 1 8.0595 1.9301 0.1486 13 6 8.3633 0.5164 1.7455 14 6 8.9364 2.9279 1.8189 15 1 8.5680 3.6791 2.5017 16 6 10.2737 2.8965 1.4845 17 7 10.7402 1.9258 0.7297 18 14 11.4228 4.2329 2.1035 19 1 12.0878 3.7756 3.3500 20 1 12.4504 4.5196 1.0706 21 1 10.6434 5.4659 2.3820 22 6 4.2204 2.0220 1.1183 23 6 3.6623 2.7744 2.2988 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0699 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3969 31 1 1.9982 3.1543 -1.3072 32 1 6.5275 0.7351 -0.8113 33 1 6.4601 2.7352 2.4554 34 1 9.3482 0.2429 1.3670 35 1 8.3811 0.5205 2.8354 36 1 7.6263 -0.2072 1.3970 37 1 11.6811 1.9036 0.4949 38 1 3.5704 3.8307 2.0460 39 1 2.6806 2.3749 2.5531 40 1 4.3323 2.6617 3.1512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309688057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:13 Heat of formation + Delta-G solvation = 43.429806 kcal Electronic energy + Delta-G solvation = -18675.068370 eV Core-core repulsion = 15911.222891 eV Total energy + Delta-G solvation = -2763.845479 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.98667 -37.79127 -36.73494 -34.38810 -33.22898 -31.77010 -30.15634 -28.91845 -27.36492 -26.81176 -25.45681 -23.30669 -22.27331 -20.74283 -20.05630 -18.48751 -17.69203 -16.72046 -16.48041 -16.11965 -15.86247 -15.36546 -14.95812 -14.47810 -14.32723 -13.84666 -13.76764 -13.53599 -13.41270 -13.16030 -13.02470 -12.97692 -12.83176 -12.68860 -12.59151 -12.34979 -12.23307 -11.99851 -11.92569 -11.73194 -11.36635 -10.96886 -10.78979 -10.38235 -9.92717 -8.14338 -7.59788 -6.25776 1.03386 1.44207 1.45433 1.56120 1.73633 2.17510 2.42792 3.17834 3.20491 3.63049 3.92254 3.97715 4.08065 4.22441 4.33939 4.45918 4.53825 4.65928 4.72688 4.79911 4.83920 4.84169 4.96042 5.05051 5.08117 5.13102 5.13973 5.20408 5.22798 5.35893 5.44476 5.47595 5.62763 5.78078 5.91989 6.18206 6.41948 6.66590 6.88496 7.05504 7.43544 7.55802 8.93830 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.044123 B = 0.004460 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.433814 B = 6276.240097 C = 6452.776949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.121 0.879 5 C -0.155 4.155 6 N -0.362 5.362 7 N -0.297 5.297 8 C -0.016 4.016 9 C 0.059 3.941 10 N -0.732 5.732 11 C 0.291 3.709 12 H -0.001 1.001 13 C -0.131 4.131 14 C -0.541 4.541 15 H 0.061 0.939 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.964 3.036 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.268 1.268 22 C -0.025 4.025 23 C -0.067 4.067 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.161 0.839 33 H 0.390 0.610 34 H 0.055 0.945 35 H 0.027 0.973 36 H 0.017 0.983 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.984 0.214 1.211 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.058 3.942 4 H 0.139 0.861 5 C -0.213 4.213 6 N -0.152 5.152 7 N -0.121 5.121 8 C -0.203 4.203 9 C -0.050 4.050 10 N -0.367 5.367 11 C 0.186 3.814 12 H 0.017 0.983 13 C -0.190 4.190 14 C -0.579 4.579 15 H 0.079 0.921 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.789 3.211 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.155 4.155 23 C -0.126 4.126 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.179 0.821 33 H 0.224 0.776 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.490 -0.448 0.092 20.495 hybrid contribution 1.880 0.782 0.829 2.198 sum -18.611 0.334 0.921 18.636 Atomic orbital electron populations 1.21773 0.92102 1.02966 1.03276 1.21813 0.98185 0.94562 1.01963 1.21586 0.72972 0.98487 1.01161 0.86090 1.22146 1.03424 0.99939 0.95795 1.48569 1.06077 1.43033 1.17539 1.76953 0.98510 1.20321 1.16294 1.23415 0.95955 1.03855 0.97037 1.17919 0.88399 1.03539 0.95098 1.44254 1.02181 1.63069 1.27160 1.18096 0.78201 0.91903 0.93191 0.98317 1.21972 0.99956 0.98249 0.98828 1.21564 0.93517 1.14449 1.28375 0.92078 1.25695 0.99544 0.97849 0.95317 1.70051 1.14936 1.32591 1.37958 0.85455 0.78307 0.79428 0.77874 1.20073 1.21010 1.19211 1.20638 0.89893 1.07797 0.97141 1.20230 1.01500 0.98762 0.92061 0.91780 0.91061 0.91066 0.92646 0.92829 0.93222 0.87666 0.92994 0.82144 0.77620 0.92624 0.95374 0.96365 0.92755 0.90351 0.89412 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.67 71.98 0.70 -1.05 16 2 C -0.13 -2.51 5.66 30.59 0.17 -2.34 16 3 C 0.16 3.41 3.13 44.99 0.14 3.55 16 4 H 0.12 1.96 6.72 -2.39 -0.02 1.95 16 5 C -0.16 -3.00 9.21 71.98 0.66 -2.34 16 6 N -0.36 -11.46 3.31 -313.24 -1.04 -12.50 16 7 N -0.30 -11.44 12.42 -56.78 -0.71 -12.15 16 8 C -0.02 -0.68 11.15 85.32 0.95 0.27 16 9 C 0.06 2.44 6.90 37.60 0.26 2.70 16 10 N -0.73 -32.23 5.30 -323.01 -1.71 -33.94 16 11 C 0.29 15.04 2.52 44.25 0.11 15.16 16 12 H 0.00 -0.06 7.15 -2.38 -0.02 -0.07 16 13 C -0.13 -6.60 9.27 71.98 0.67 -5.93 16 14 C -0.54 -29.51 8.67 25.60 0.22 -29.28 16 15 H 0.06 3.22 7.72 -2.91 -0.02 3.20 16 16 C 0.02 0.86 5.36 84.66 0.45 1.31 16 17 N -0.92 -52.70 11.58 21.45 0.25 -52.45 16 18 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 C -0.03 -0.84 6.98 41.33 0.29 -0.55 16 23 C -0.07 -1.57 9.78 71.24 0.70 -0.88 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.07 0.72 6.57 -2.39 -0.02 0.70 16 27 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.29 6.56 -2.39 -0.02 1.27 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.16 7.10 7.44 -2.91 -0.02 7.08 16 33 H 0.39 15.86 7.91 -92.71 -0.73 15.13 16 34 H 0.05 3.04 6.45 -2.39 -0.02 3.03 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.52 7.13 -2.39 -0.02 1.50 16 40 H 0.07 1.78 7.61 -2.39 -0.02 1.76 16 Total: -1.00 -64.71 324.62 4.43 -60.29 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.28 Total: 24.96 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 5.32 Total: -19.39 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -3.21 Total: -111.04 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -64.71 4.43 -60.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309688057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.716 kcal (2) G-P(sol) polarization free energy of solvation -64.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds