Wall clock time and date at job start Mon Mar 30 2020 06:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47427 * 2 1 4 4 H 1.09005 * 109.47044 * 55.00267 * 3 2 1 5 5 C 1.53006 * 109.47170 * 295.00671 * 3 2 1 6 6 N 1.46499 * 109.47508 * 175.00491 * 3 2 1 7 7 N 1.40067 * 125.97360 * 60.02285 * 6 3 2 8 8 C 1.31224 * 108.17197 * 180.02562 * 7 6 3 9 9 N 1.39986 * 125.97220 * 180.02562 * 8 7 6 10 10 C 1.46500 * 119.99474 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47670 * 34.99900 * 10 9 8 12 12 C 1.53003 * 109.47115 * 274.99626 * 10 9 8 13 13 C 1.50704 * 109.47173 * 155.00118 * 10 9 8 14 14 H 1.07995 * 119.99869 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99845 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00438 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 119.99765 * 179.97438 * 15 13 10 18 18 H 1.48508 * 109.46806 * 60.00099 * 17 15 13 19 19 H 1.48493 * 109.47139 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47038 * 300.00606 * 17 15 13 21 21 C 1.40427 * 108.04654 * 0.02562 * 8 7 6 22 22 C 1.34961 * 125.96923 * 240.02897 * 6 3 2 23 23 C 1.50697 * 126.07018 * 359.97438 * 22 6 3 24 24 H 1.08997 * 109.47286 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47049 * 299.99501 * 1 2 3 26 26 H 1.08997 * 109.47669 * 59.99646 * 1 2 3 27 27 H 1.09006 * 109.46505 * 239.99962 * 2 1 3 28 28 H 1.09000 * 109.47069 * 120.00789 * 2 1 3 29 29 H 1.09005 * 109.46807 * 299.99741 * 5 3 2 30 30 H 1.08996 * 109.47078 * 59.99538 * 5 3 2 31 31 H 1.09002 * 109.47135 * 180.02562 * 5 3 2 32 32 H 0.96999 * 120.00359 * 359.97438 * 9 8 7 33 33 H 1.08999 * 109.47296 * 179.97438 * 12 10 9 34 34 H 1.08999 * 109.47076 * 300.00638 * 12 10 9 35 35 H 1.09005 * 109.46620 * 60.00238 * 12 10 9 36 36 H 0.96994 * 120.00085 * 180.02562 * 16 15 13 37 37 H 1.08004 * 126.06673 * 179.97438 * 21 8 7 38 38 H 1.08997 * 109.47543 * 269.97714 * 23 22 6 39 39 H 1.08997 * 109.47499 * 29.98146 * 23 22 6 40 40 H 1.09008 * 109.46789 * 149.97682 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6352 2.1265 -1.3073 6 7 3.5001 1.4442 0.1203 7 7 4.4000 0.8505 -0.7739 8 6 5.6169 1.0620 -0.3307 9 7 6.8007 0.6296 -0.9401 10 6 8.0951 0.9410 -0.3288 11 1 7.9989 0.9198 0.7568 12 6 8.5475 2.3333 -0.7736 13 6 9.1144 -0.0807 -0.7627 14 1 8.8266 -0.8821 -1.4270 15 6 10.4143 0.0076 -0.3116 16 7 10.7649 0.9838 0.4970 17 14 11.6775 -1.2593 -0.8490 18 1 11.8083 -1.2313 -2.3280 19 1 12.9896 -0.9436 -0.2295 20 1 11.2386 -2.6103 -0.4164 21 6 5.5238 1.7978 0.8617 22 6 4.2131 2.0180 1.1121 23 6 3.6489 2.7698 2.2900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5140 0.8899 29 1 2.0698 1.5875 -2.1492 30 1 0.5489 2.1252 -1.3968 31 1 1.9990 3.1541 -1.3075 32 1 6.7639 0.1239 -1.7670 33 1 9.5104 2.5652 -0.3184 34 1 8.6437 2.3545 -1.8591 35 1 7.8103 3.0723 -0.4597 36 1 11.6794 1.0461 0.8140 37 1 6.3520 2.1296 1.4704 38 1 3.5568 3.8259 2.0368 39 1 2.6666 2.3692 2.5401 40 1 4.3153 2.6580 3.1454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309712307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:20 Heat of formation + Delta-G solvation = 61.826338 kcal Electronic energy + Delta-G solvation = -18610.624563 eV Core-core repulsion = 15847.576818 eV Total energy + Delta-G solvation = -2763.047745 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56045 -36.55451 -35.22301 -32.73965 -31.50441 -30.58200 -28.73721 -27.56089 -26.34377 -25.17530 -24.32493 -21.44385 -20.66466 -19.31269 -18.89512 -16.43964 -16.33828 -15.19372 -14.94603 -14.77559 -14.50127 -13.73175 -13.59115 -13.43240 -12.87162 -12.72900 -12.56447 -12.38347 -12.14546 -11.97549 -11.76861 -11.70307 -11.39303 -11.12620 -10.99325 -10.86902 -10.79367 -10.63542 -10.22766 -10.13860 -9.59609 -9.27291 -8.92950 -8.42450 -7.87412 -6.57873 -6.06854 -4.13643 2.52624 2.98667 3.30963 3.35027 3.38086 3.89580 4.33750 4.51967 4.76105 4.83246 4.94796 5.08794 5.18757 5.25888 5.30255 5.32459 5.44677 5.60497 5.64047 5.76667 5.86022 5.92623 5.96258 6.05918 6.23601 6.34210 6.48641 6.60766 6.85852 7.07021 7.13018 7.24173 7.60663 7.73618 7.79338 7.95837 8.13417 8.28185 8.77726 8.90840 9.20549 9.53938 10.99281 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.035479 B = 0.004560 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.013876 B = 6139.054751 C = 6472.791738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.171 3.829 4 H 0.091 0.909 5 C -0.159 4.159 6 N -0.380 5.380 7 N -0.376 5.376 8 C 0.354 3.646 9 N -0.705 5.705 10 C 0.284 3.716 11 H 0.036 0.964 12 C -0.151 4.151 13 C -0.526 4.526 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.888 5.888 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.296 4.296 22 C 0.086 3.914 23 C -0.088 4.088 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.391 0.609 33 H 0.088 0.912 34 H 0.027 0.973 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.140 0.860 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.398 2.991 2.000 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.068 3.932 4 H 0.109 0.891 5 C -0.217 4.217 6 N -0.164 5.164 7 N -0.210 5.210 8 C 0.095 3.905 9 N -0.342 5.342 10 C 0.181 3.819 11 H 0.054 0.946 12 C -0.210 4.210 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.329 4.329 22 C -0.040 4.040 23 C -0.146 4.146 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.224 0.776 33 H 0.106 0.894 34 H 0.046 0.954 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.158 0.842 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.908 2.633 1.347 18.150 hybrid contribution 1.309 -0.450 0.062 1.386 sum -16.599 2.183 1.410 16.801 Atomic orbital electron populations 1.21806 0.95123 1.02032 1.01838 1.21844 0.95593 0.95860 1.03648 1.21027 0.75828 0.97170 0.99170 0.89143 1.22142 1.01082 1.00884 0.97598 1.48000 1.04692 1.44981 1.18687 1.77343 0.97119 1.29482 1.17100 1.19493 0.87489 0.92237 0.91293 1.44649 1.01342 1.60543 1.27666 1.18569 0.77305 0.92494 0.93503 0.94597 1.22192 1.01875 0.97568 0.99374 1.21210 0.94042 1.11201 1.30013 0.92173 1.24852 0.98154 0.95823 0.94845 1.69874 1.18813 1.31087 1.32868 0.86520 0.80226 0.81575 0.78855 1.20200 1.21193 1.20225 1.20859 0.95310 1.14328 1.02364 1.20778 0.91872 0.98721 0.92660 1.20380 1.00756 0.99034 0.94460 0.92369 0.92753 0.92246 0.90530 0.91672 0.91135 0.91339 0.92455 0.77632 0.89366 0.95423 0.96944 0.92664 0.84185 0.90820 0.91855 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.87 16 2 C -0.13 -1.51 5.66 -26.74 -0.15 -1.66 16 3 C 0.17 2.10 3.11 -67.93 -0.21 1.89 16 4 H 0.09 0.90 6.65 -51.93 -0.35 0.56 16 5 C -0.16 -1.80 9.21 37.16 0.34 -1.46 16 6 N -0.38 -6.39 3.28 -50.71 -0.17 -6.56 16 7 N -0.38 -7.72 12.44 31.41 0.39 -7.32 16 8 C 0.35 7.81 8.14 -154.55 -1.26 6.56 16 9 N -0.70 -16.43 5.28 -54.70 -0.29 -16.71 16 10 C 0.28 7.29 2.56 -69.08 -0.18 7.12 16 11 H 0.04 1.00 7.14 -51.93 -0.37 0.63 16 12 C -0.15 -3.76 9.28 37.16 0.34 -3.41 16 13 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 17 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.30 -6.00 9.83 -39.82 -0.39 -6.39 16 22 C 0.09 1.45 6.92 -82.28 -0.57 0.88 16 23 C -0.09 -1.01 9.94 36.00 0.36 -0.65 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.58 6.56 -51.93 -0.34 0.24 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.39 8.82 8.67 -40.82 -0.35 8.46 16 33 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.14 2.88 7.45 -52.48 -0.39 2.49 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.59 7.08 -51.93 -0.37 0.23 16 40 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -29.99 325.17 -7.90 -37.89 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.59 Total: 6.98 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.75 Total: -10.99 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.56 Total: -54.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.99 -7.90 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309712307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.717 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds