Wall clock time and date at job start Mon Mar 30 2020 06:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47427 * 2 1 4 4 H 1.09005 * 109.47044 * 55.00267 * 3 2 1 5 5 C 1.53006 * 109.47170 * 295.00671 * 3 2 1 6 6 N 1.46499 * 109.47508 * 175.00491 * 3 2 1 7 7 N 1.40067 * 125.97360 * 60.02285 * 6 3 2 8 8 C 1.31224 * 108.17197 * 180.02562 * 7 6 3 9 9 N 1.39986 * 125.97220 * 180.02562 * 8 7 6 10 10 C 1.46500 * 119.99474 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47670 * 34.99900 * 10 9 8 12 12 C 1.53003 * 109.47115 * 274.99626 * 10 9 8 13 13 C 1.50704 * 109.47173 * 155.00118 * 10 9 8 14 14 H 1.07995 * 119.99869 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99845 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00438 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 119.99765 * 179.97438 * 15 13 10 18 18 H 1.48508 * 109.46806 * 60.00099 * 17 15 13 19 19 H 1.48493 * 109.47139 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47038 * 300.00606 * 17 15 13 21 21 C 1.40427 * 108.04654 * 0.02562 * 8 7 6 22 22 C 1.34961 * 125.96923 * 240.02897 * 6 3 2 23 23 C 1.50697 * 126.07018 * 359.97438 * 22 6 3 24 24 H 1.08997 * 109.47286 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47049 * 299.99501 * 1 2 3 26 26 H 1.08997 * 109.47669 * 59.99646 * 1 2 3 27 27 H 1.09006 * 109.46505 * 239.99962 * 2 1 3 28 28 H 1.09000 * 109.47069 * 120.00789 * 2 1 3 29 29 H 1.09005 * 109.46807 * 299.99741 * 5 3 2 30 30 H 1.08996 * 109.47078 * 59.99538 * 5 3 2 31 31 H 1.09002 * 109.47135 * 180.02562 * 5 3 2 32 32 H 0.96999 * 120.00359 * 359.97438 * 9 8 7 33 33 H 1.08999 * 109.47296 * 179.97438 * 12 10 9 34 34 H 1.08999 * 109.47076 * 300.00638 * 12 10 9 35 35 H 1.09005 * 109.46620 * 60.00238 * 12 10 9 36 36 H 0.96994 * 120.00085 * 180.02562 * 16 15 13 37 37 H 1.08004 * 126.06673 * 179.97438 * 21 8 7 38 38 H 1.08997 * 109.47543 * 269.97714 * 23 22 6 39 39 H 1.08997 * 109.47499 * 29.98146 * 23 22 6 40 40 H 1.09008 * 109.46789 * 149.97682 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6352 2.1265 -1.3073 6 7 3.5001 1.4442 0.1203 7 7 4.4000 0.8505 -0.7739 8 6 5.6169 1.0620 -0.3307 9 7 6.8007 0.6296 -0.9401 10 6 8.0951 0.9410 -0.3288 11 1 7.9989 0.9198 0.7568 12 6 8.5475 2.3333 -0.7736 13 6 9.1144 -0.0807 -0.7627 14 1 8.8266 -0.8821 -1.4270 15 6 10.4143 0.0076 -0.3116 16 7 10.7649 0.9838 0.4970 17 14 11.6775 -1.2593 -0.8490 18 1 11.8083 -1.2313 -2.3280 19 1 12.9896 -0.9436 -0.2295 20 1 11.2386 -2.6103 -0.4164 21 6 5.5238 1.7978 0.8617 22 6 4.2131 2.0180 1.1121 23 6 3.6489 2.7698 2.2900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5140 0.8899 29 1 2.0698 1.5875 -2.1492 30 1 0.5489 2.1252 -1.3968 31 1 1.9990 3.1541 -1.3075 32 1 6.7639 0.1239 -1.7670 33 1 9.5104 2.5652 -0.3184 34 1 8.6437 2.3545 -1.8591 35 1 7.8103 3.0723 -0.4597 36 1 11.6794 1.0461 0.8140 37 1 6.3520 2.1296 1.4704 38 1 3.5568 3.8259 2.0368 39 1 2.6666 2.3692 2.5401 40 1 4.3153 2.6580 3.1454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309712307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:20 Heat of formation + Delta-G solvation = 44.548141 kcal Electronic energy + Delta-G solvation = -18611.373802 eV Core-core repulsion = 15847.576818 eV Total energy + Delta-G solvation = -2763.796984 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.99871 -37.94726 -36.76859 -34.54291 -32.97494 -31.75311 -30.25676 -28.98618 -27.64772 -27.26159 -25.29558 -23.07543 -22.08809 -20.81629 -20.32858 -18.40365 -17.68826 -16.76842 -16.43155 -16.16322 -15.85715 -15.35150 -14.87544 -14.58904 -14.33177 -14.05034 -13.78351 -13.58451 -13.39249 -13.28259 -12.99148 -12.92527 -12.86469 -12.67527 -12.62022 -12.38206 -12.23585 -12.09501 -11.90056 -11.68873 -11.13557 -11.07376 -10.79471 -10.47773 -9.35456 -8.29495 -8.14083 -6.30743 1.13792 1.43800 1.45681 1.53270 1.69301 2.25292 2.40900 2.97953 3.14309 3.63745 3.86694 3.92089 4.11848 4.29346 4.41217 4.47610 4.57953 4.65103 4.76672 4.78374 4.84071 4.90642 4.99324 5.02908 5.08714 5.11531 5.13763 5.14862 5.23606 5.33352 5.42356 5.45029 5.58215 5.75283 5.90988 6.12850 6.41109 6.50256 6.78740 7.11043 7.33896 7.50644 8.89905 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.035479 B = 0.004560 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.013876 B = 6139.054751 C = 6472.791738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.157 3.843 4 H 0.129 0.871 5 C -0.154 4.154 6 N -0.371 5.371 7 N -0.395 5.395 8 C 0.328 3.672 9 N -0.713 5.713 10 C 0.296 3.704 11 H 0.006 0.994 12 C -0.135 4.135 13 C -0.549 4.549 14 H 0.058 0.942 15 C 0.021 3.979 16 N -0.912 5.912 17 Si 0.967 3.033 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.274 1.274 21 C -0.341 4.341 22 C 0.109 3.891 23 C -0.086 4.086 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.390 0.610 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.019 0.981 36 H 0.267 0.733 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.695 3.355 2.596 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.056 3.944 4 H 0.146 0.854 5 C -0.211 4.211 6 N -0.155 5.155 7 N -0.230 5.230 8 C 0.070 3.930 9 N -0.351 5.351 10 C 0.192 3.808 11 H 0.024 0.976 12 C -0.194 4.194 13 C -0.587 4.587 14 H 0.076 0.924 15 C -0.179 4.179 16 N -0.551 5.551 17 Si 0.792 3.208 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.199 1.199 21 C -0.374 4.374 22 C -0.021 4.021 23 C -0.144 4.144 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.223 0.777 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.253 2.993 1.928 20.564 hybrid contribution 1.847 -0.534 -0.084 1.924 sum -18.407 2.459 1.844 18.662 Atomic orbital electron populations 1.21770 0.91983 1.02904 1.03366 1.21790 0.98195 0.94816 1.01715 1.21617 0.73082 0.98362 1.01291 0.85365 1.22115 1.03270 0.99896 0.95851 1.48468 1.06115 1.43251 1.17624 1.77232 0.97121 1.30020 1.18581 1.19693 0.87477 0.93474 0.92313 1.44352 1.01358 1.61520 1.27861 1.18226 0.78269 0.92559 0.91775 0.97626 1.21988 1.00981 0.97568 0.98849 1.21493 0.95001 1.11759 1.30487 0.92400 1.25653 0.99898 0.97677 0.94692 1.69990 1.19336 1.32356 1.33389 0.85484 0.77737 0.78968 0.78645 1.19525 1.20432 1.19919 1.20912 0.96899 1.16848 1.02699 1.21450 0.90728 0.96708 0.93188 1.20594 1.02138 0.99563 0.92120 0.91976 0.90691 0.91150 0.93266 0.92915 0.93796 0.87679 0.92819 0.77717 0.91164 0.95587 0.96162 0.92427 0.85709 0.88600 0.88715 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.67 71.98 0.70 -1.14 16 2 C -0.13 -2.68 5.66 30.59 0.17 -2.51 16 3 C 0.16 3.43 3.11 44.99 0.14 3.57 16 4 H 0.13 1.90 6.65 -2.38 -0.02 1.89 16 5 C -0.15 -3.09 9.21 71.98 0.66 -2.43 16 6 N -0.37 -12.08 3.28 -314.34 -1.03 -13.11 16 7 N -0.40 -16.55 12.44 -54.55 -0.68 -17.23 16 8 C 0.33 15.05 8.14 133.39 1.09 16.14 16 9 N -0.71 -34.91 5.28 -326.96 -1.73 -36.63 16 10 C 0.30 15.89 2.56 44.25 0.11 16.01 16 11 H 0.01 0.35 7.14 -2.39 -0.02 0.33 16 12 C -0.13 -6.96 9.28 71.98 0.67 -6.29 16 13 C -0.55 -30.91 8.73 25.60 0.22 -30.69 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 15 C 0.02 1.16 5.30 84.65 0.45 1.61 16 16 N -0.91 -52.13 11.32 21.45 0.24 -51.88 16 17 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C -0.34 -14.23 9.83 22.11 0.22 -14.02 16 22 C 0.11 3.50 6.92 41.39 0.29 3.79 16 23 C -0.09 -1.68 9.94 71.23 0.71 -0.97 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.07 0.77 6.56 -2.39 -0.02 0.75 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.10 1.35 6.56 -2.39 -0.02 1.33 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.39 18.54 8.67 -92.71 -0.80 17.73 16 33 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 34 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 37 H 0.12 5.45 7.45 -2.91 -0.02 5.43 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.09 1.29 7.08 -2.39 -0.02 1.27 16 40 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -67.79 325.17 4.47 -63.32 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.21 Total: 26.86 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 5.42 Total: -16.94 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -3.19 Total: -118.85 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -67.79 4.47 -63.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309712307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.867 kcal (2) G-P(sol) polarization free energy of solvation -67.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds