Wall clock time and date at job start Mon Mar 30 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47481 * 2 1 4 4 H 1.09004 * 109.47174 * 55.43649 * 3 2 1 5 5 N 1.46904 * 109.47080 * 295.43469 * 3 2 1 6 6 C 1.46901 * 110.99815 * 151.59690 * 5 3 2 7 7 H 1.08997 * 109.47241 * 327.86924 * 6 5 3 8 8 C 1.53001 * 109.47171 * 87.86737 * 6 5 3 9 9 C 1.50693 * 109.47377 * 207.86898 * 6 5 3 10 10 H 1.08004 * 119.99843 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00208 * 180.02562 * 9 6 5 12 12 N 1.31503 * 120.00341 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99739 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47627 * 59.99647 * 13 11 9 15 15 H 1.48499 * 109.46893 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46912 * 299.99478 * 13 11 9 17 17 C 1.50699 * 109.47196 * 175.43195 * 3 2 1 18 18 C 1.39875 * 126.03759 * 79.69389 * 17 3 2 19 19 N 1.30837 * 108.20150 * 179.81774 * 18 17 3 20 20 N 1.40086 * 108.20324 * 0.44041 * 19 18 17 21 21 C 1.46504 * 126.03266 * 179.70015 * 20 19 18 22 22 C 1.52993 * 109.47080 * 305.02049 * 21 20 19 23 23 C 1.34945 * 107.92719 * 359.71482 * 20 19 18 24 24 H 1.08995 * 109.47852 * 177.74620 * 1 2 3 25 25 H 1.08998 * 109.46894 * 297.75024 * 1 2 3 26 26 H 1.09001 * 109.47209 * 57.74227 * 1 2 3 27 27 H 1.09004 * 109.46641 * 240.00244 * 2 1 3 28 28 H 1.08998 * 109.46988 * 120.00341 * 2 1 3 29 29 H 1.00898 * 110.99937 * 27.64385 * 5 3 2 30 30 H 1.09000 * 109.47318 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47274 * 300.00436 * 8 6 5 32 32 H 1.09000 * 109.47276 * 59.99630 * 8 6 5 33 33 H 0.96998 * 120.00869 * 180.02562 * 12 11 9 34 34 H 1.07998 * 125.89945 * 359.97438 * 18 17 3 35 35 H 1.09004 * 109.47378 * 65.02200 * 21 20 19 36 36 H 1.09001 * 109.46962 * 185.02030 * 21 20 19 37 37 H 1.09001 * 109.47239 * 60.00150 * 22 21 20 38 38 H 1.09006 * 109.47160 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47139 * 300.00298 * 22 21 20 40 40 H 1.07998 * 126.12760 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6115 1.9794 0.8463 5 7 1.6425 2.1024 -1.2508 6 6 1.4866 3.5500 -1.0557 7 1 1.1388 3.7445 -0.0412 8 6 2.8335 4.2421 -1.2744 9 6 0.4811 4.0846 -2.0426 10 1 0.0057 3.4158 -2.7449 11 6 0.1688 5.4275 -2.0497 12 7 0.7480 6.2418 -1.1950 13 14 -1.0782 6.0899 -3.2727 14 1 -2.3856 5.4186 -3.0595 15 1 -1.2357 7.5533 -3.0756 16 1 -0.6051 5.8242 -4.6551 17 6 3.5428 1.4438 0.1132 18 6 4.4467 1.2128 -0.9290 19 7 5.6592 1.3000 -0.4451 20 7 5.5649 1.5797 0.9243 21 6 6.6887 1.7510 1.8483 22 6 7.5938 0.5192 1.7844 23 6 4.2560 1.6631 1.2420 24 1 -0.3634 -1.0268 -0.0404 25 1 -0.3633 0.4785 0.9095 26 1 -0.3634 0.5485 -0.8691 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.7976 1.6945 -1.6221 30 1 2.7178 5.3163 -1.1301 31 1 3.5609 3.8554 -0.5605 32 1 3.1815 4.0476 -2.2889 33 1 0.5281 7.1866 -1.1997 34 1 4.1885 1.0016 -1.9561 35 1 7.2592 2.6361 1.5665 36 1 6.3096 1.8711 2.8632 37 1 7.9730 0.3991 0.7695 38 1 8.4298 0.6464 2.4722 39 1 7.0234 -0.3659 2.0662 40 1 3.8504 1.8677 2.2217 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309937448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:57 Heat of formation + Delta-G solvation = 68.222044 kcal Electronic energy + Delta-G solvation = -18947.957637 eV Core-core repulsion = 16185.187230 eV Total energy + Delta-G solvation = -2762.770407 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76388 -36.84874 -34.17729 -33.54113 -31.26849 -30.05126 -29.33983 -27.56452 -25.15875 -24.48782 -23.44755 -21.10137 -20.42276 -19.87298 -18.94940 -16.62251 -16.36007 -15.21231 -14.91282 -14.61803 -14.14570 -13.92099 -13.68171 -13.46397 -12.81342 -12.66431 -12.42184 -12.14445 -12.05493 -11.97336 -11.56795 -11.26331 -11.03373 -10.93861 -10.79961 -10.62840 -10.42291 -10.27369 -10.02694 -9.85904 -9.79309 -8.91750 -8.75505 -8.39267 -7.74696 -7.17573 -5.95549 -4.02179 2.35228 2.88148 3.34267 3.38742 3.41058 3.41963 4.44963 4.61214 4.93962 5.09638 5.18534 5.28482 5.34945 5.43704 5.49425 5.53217 5.62115 5.68566 5.81356 5.98072 6.04740 6.16378 6.26243 6.28682 6.41192 6.45846 6.73058 6.77631 7.06076 7.22234 7.34181 7.40674 7.45514 7.65098 7.85142 8.03397 8.21730 8.38485 8.52654 8.80195 9.11139 9.63586 11.10059 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.025148 B = 0.005750 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.120026 B = 4868.015962 C = 5602.297071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.161 3.839 4 H 0.040 0.960 5 N -0.681 5.681 6 C 0.218 3.782 7 H -0.001 1.001 8 C -0.118 4.118 9 C -0.519 4.519 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.890 5.890 13 Si 0.894 3.106 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.192 4.192 18 C 0.083 3.917 19 N -0.312 5.312 20 N -0.383 5.383 21 C 0.135 3.865 22 C -0.162 4.162 23 C 0.037 3.963 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.332 0.668 30 H 0.073 0.927 31 H 0.008 0.992 32 H 0.026 0.974 33 H 0.260 0.740 34 H 0.180 0.820 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.173 -10.893 7.325 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.049 3.951 4 H 0.058 0.942 5 N -0.314 5.314 6 C 0.111 3.889 7 H 0.017 0.983 8 C -0.176 4.176 9 C -0.557 4.557 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.722 3.278 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.205 4.205 18 C -0.103 4.103 19 N -0.133 5.133 20 N -0.166 5.166 21 C 0.013 3.987 22 C -0.220 4.220 23 C -0.108 4.108 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.197 0.803 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.181 -10.674 6.991 15.720 hybrid contribution -2.334 0.745 0.109 2.453 sum 6.847 -9.928 7.100 13.995 Atomic orbital electron populations 1.21836 0.96171 1.00969 1.02306 1.21673 0.95224 0.96929 1.01740 1.19740 0.88964 0.93153 0.93280 0.94192 1.60656 1.39224 1.06355 1.25203 1.19090 0.93391 0.81499 0.94959 0.98340 1.21662 0.96165 1.02180 0.97634 1.21297 1.22823 0.93489 1.18140 0.92419 1.24898 0.96310 0.96957 0.95732 1.69895 1.42601 1.04115 1.36265 0.86639 0.81704 0.77672 0.81818 1.20386 1.21414 1.20242 1.20081 0.96663 1.11720 0.91989 1.23640 0.88838 0.97797 1.00065 1.77230 1.22818 1.24399 0.88826 1.48444 1.04650 1.56541 1.07000 1.21508 0.86563 0.99402 0.91206 1.22036 0.99245 0.97355 1.03396 1.22167 0.84213 1.04169 1.00237 0.93230 0.93058 0.91923 0.91557 0.92529 0.84768 0.90882 0.97289 0.95508 0.93026 0.80310 0.90346 0.89264 0.91182 0.91249 0.92327 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.78 37.16 0.36 -1.78 16 2 C -0.12 -1.71 5.49 -26.73 -0.15 -1.86 16 3 C 0.16 2.86 2.48 -68.87 -0.17 2.69 16 4 H 0.04 0.77 7.33 -51.93 -0.38 0.39 16 5 N -0.68 -14.21 5.92 -102.17 -0.60 -14.82 16 6 C 0.22 5.53 2.61 -68.87 -0.18 5.35 16 7 H 0.00 -0.03 7.34 -51.93 -0.38 -0.41 16 8 C -0.12 -3.05 9.03 37.16 0.34 -2.71 16 9 C -0.52 -14.24 8.59 -34.44 -0.30 -14.54 16 10 H 0.06 1.55 7.57 -52.48 -0.40 1.15 16 11 C 0.06 1.75 5.30 -17.83 -0.09 1.65 16 12 N -0.89 -25.79 11.32 55.43 0.63 -25.16 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.19 -3.37 3.31 -105.05 -0.35 -3.72 16 18 C 0.08 1.49 11.53 -17.36 -0.20 1.29 16 19 N -0.31 -5.52 12.42 30.63 0.38 -5.14 16 20 N -0.38 -5.85 3.68 -61.37 -0.23 -6.07 16 21 C 0.13 1.46 7.23 -4.04 -0.03 1.43 16 22 C -0.16 -1.53 10.10 37.15 0.38 -1.15 16 23 C 0.04 0.58 11.36 -17.23 -0.20 0.39 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.94 6.36 -51.93 -0.33 0.61 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.33 6.75 5.83 -39.29 -0.23 6.52 16 30 H 0.07 2.07 6.07 -51.93 -0.32 1.75 16 31 H 0.01 0.20 6.44 -51.93 -0.33 -0.13 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.18 3.12 8.06 -52.49 -0.42 2.70 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -30.62 323.71 -7.12 -37.74 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.57 Total: 5.12 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.59 Total: -12.96 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.18 Total: -51.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.62 -7.12 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309937448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.965 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds