Wall clock time and date at job start Mon Mar 30 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47481 * 2 1 4 4 H 1.09004 * 109.47174 * 55.43649 * 3 2 1 5 5 N 1.46904 * 109.47080 * 295.43469 * 3 2 1 6 6 C 1.46901 * 110.99815 * 151.59690 * 5 3 2 7 7 H 1.08997 * 109.47241 * 327.86924 * 6 5 3 8 8 C 1.53001 * 109.47171 * 87.86737 * 6 5 3 9 9 C 1.50693 * 109.47377 * 207.86898 * 6 5 3 10 10 H 1.08004 * 119.99843 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00208 * 180.02562 * 9 6 5 12 12 N 1.31503 * 120.00341 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99739 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47627 * 59.99647 * 13 11 9 15 15 H 1.48499 * 109.46893 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46912 * 299.99478 * 13 11 9 17 17 C 1.50699 * 109.47196 * 175.43195 * 3 2 1 18 18 C 1.39875 * 126.03759 * 79.69389 * 17 3 2 19 19 N 1.30837 * 108.20150 * 179.81774 * 18 17 3 20 20 N 1.40086 * 108.20324 * 0.44041 * 19 18 17 21 21 C 1.46504 * 126.03266 * 179.70015 * 20 19 18 22 22 C 1.52993 * 109.47080 * 305.02049 * 21 20 19 23 23 C 1.34945 * 107.92719 * 359.71482 * 20 19 18 24 24 H 1.08995 * 109.47852 * 177.74620 * 1 2 3 25 25 H 1.08998 * 109.46894 * 297.75024 * 1 2 3 26 26 H 1.09001 * 109.47209 * 57.74227 * 1 2 3 27 27 H 1.09004 * 109.46641 * 240.00244 * 2 1 3 28 28 H 1.08998 * 109.46988 * 120.00341 * 2 1 3 29 29 H 1.00898 * 110.99937 * 27.64385 * 5 3 2 30 30 H 1.09000 * 109.47318 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47274 * 300.00436 * 8 6 5 32 32 H 1.09000 * 109.47276 * 59.99630 * 8 6 5 33 33 H 0.96998 * 120.00869 * 180.02562 * 12 11 9 34 34 H 1.07998 * 125.89945 * 359.97438 * 18 17 3 35 35 H 1.09004 * 109.47378 * 65.02200 * 21 20 19 36 36 H 1.09001 * 109.46962 * 185.02030 * 21 20 19 37 37 H 1.09001 * 109.47239 * 60.00150 * 22 21 20 38 38 H 1.09006 * 109.47160 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47139 * 300.00298 * 22 21 20 40 40 H 1.07998 * 126.12760 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6115 1.9794 0.8463 5 7 1.6425 2.1024 -1.2508 6 6 1.4866 3.5500 -1.0557 7 1 1.1388 3.7445 -0.0412 8 6 2.8335 4.2421 -1.2744 9 6 0.4811 4.0846 -2.0426 10 1 0.0057 3.4158 -2.7449 11 6 0.1688 5.4275 -2.0497 12 7 0.7480 6.2418 -1.1950 13 14 -1.0782 6.0899 -3.2727 14 1 -2.3856 5.4186 -3.0595 15 1 -1.2357 7.5533 -3.0756 16 1 -0.6051 5.8242 -4.6551 17 6 3.5428 1.4438 0.1132 18 6 4.4467 1.2128 -0.9290 19 7 5.6592 1.3000 -0.4451 20 7 5.5649 1.5797 0.9243 21 6 6.6887 1.7510 1.8483 22 6 7.5938 0.5192 1.7844 23 6 4.2560 1.6631 1.2420 24 1 -0.3634 -1.0268 -0.0404 25 1 -0.3633 0.4785 0.9095 26 1 -0.3634 0.5485 -0.8691 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.7976 1.6945 -1.6221 30 1 2.7178 5.3163 -1.1301 31 1 3.5609 3.8554 -0.5605 32 1 3.1815 4.0476 -2.2889 33 1 0.5281 7.1866 -1.1997 34 1 4.1885 1.0016 -1.9561 35 1 7.2592 2.6361 1.5665 36 1 6.3096 1.8711 2.8632 37 1 7.9730 0.3991 0.7695 38 1 8.4298 0.6464 2.4722 39 1 7.0234 -0.3659 2.0662 40 1 3.8504 1.8677 2.2217 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309937448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:56 Heat of formation + Delta-G solvation = 49.193126 kcal Electronic energy + Delta-G solvation = -18948.782792 eV Core-core repulsion = 16185.187230 eV Total energy + Delta-G solvation = -2763.595562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03172 -38.41454 -35.64786 -34.93409 -33.07957 -31.30166 -30.53054 -29.31756 -27.20464 -25.89744 -24.48025 -22.37487 -22.01813 -21.40847 -20.32369 -18.46043 -17.72426 -16.83565 -16.28802 -15.99696 -15.74076 -15.20189 -15.09748 -14.59788 -14.34903 -14.14009 -13.98052 -13.42180 -13.23106 -13.11295 -12.91554 -12.81830 -12.67991 -12.49054 -12.36150 -12.18215 -12.14415 -11.96637 -11.60367 -11.55333 -11.29668 -10.82361 -10.50812 -10.17420 -9.06831 -8.92666 -8.07960 -6.22455 1.09746 1.43632 1.45819 1.52931 1.79593 2.05884 2.44347 3.19817 3.58862 3.84638 4.11386 4.14752 4.21701 4.33014 4.36093 4.38625 4.48134 4.67034 4.74957 4.87424 4.90027 4.98217 5.04126 5.15332 5.16842 5.19392 5.22200 5.27447 5.34681 5.38106 5.54877 5.58478 5.75329 5.88840 5.95586 6.27648 6.31546 6.60218 6.87000 6.95990 7.15818 7.48344 8.96576 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.025148 B = 0.005750 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.120026 B = 4868.015962 C = 5602.297071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C 0.163 3.837 4 H 0.024 0.976 5 N -0.677 5.677 6 C 0.228 3.772 7 H -0.033 1.033 8 C -0.098 4.098 9 C -0.537 4.537 10 H 0.060 0.940 11 C 0.013 3.987 12 N -0.919 5.919 13 Si 0.959 3.041 14 H -0.268 1.268 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.217 4.217 18 C 0.068 3.932 19 N -0.333 5.333 20 N -0.377 5.377 21 C 0.121 3.879 22 C -0.154 4.154 23 C 0.042 3.958 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.335 0.665 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.175 0.825 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.048 0.952 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.171 -11.785 8.114 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C 0.052 3.948 4 H 0.042 0.958 5 N -0.310 5.310 6 C 0.120 3.880 7 H -0.015 1.015 8 C -0.157 4.157 9 C -0.575 4.575 10 H 0.078 0.922 11 C -0.186 4.186 12 N -0.559 5.559 13 Si 0.785 3.215 14 H -0.193 1.193 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.229 4.229 18 C -0.118 4.118 19 N -0.156 5.156 20 N -0.161 5.161 21 C 0.002 3.998 22 C -0.212 4.212 23 C -0.104 4.104 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.192 0.808 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.198 -11.592 7.780 16.718 hybrid contribution -2.244 1.003 -0.049 2.458 sum 6.953 -10.589 7.731 14.841 Atomic orbital electron populations 1.21812 0.95553 1.02256 1.01374 1.21593 0.95628 0.94648 1.02661 1.19757 0.89482 0.94586 0.90974 0.95765 1.60547 1.39185 1.04107 1.27165 1.18807 0.92406 0.84091 0.92711 1.01546 1.21424 0.96734 1.00453 0.97050 1.21655 1.23377 0.93962 1.18531 0.92195 1.25710 0.98136 0.97278 0.97433 1.70032 1.43835 1.04291 1.37715 0.85599 0.79553 0.76957 0.79423 1.19344 1.21185 1.19833 1.20111 0.96364 1.13630 0.92792 1.23637 0.89258 0.98668 1.00204 1.77164 1.22782 1.25130 0.90475 1.48841 1.05698 1.54931 1.06585 1.21979 0.85836 1.00173 0.91841 1.21976 0.99812 0.96501 1.02906 1.22615 0.84316 1.02526 1.00960 0.90757 0.93333 0.93534 0.91405 0.90724 0.84470 0.93533 0.96515 0.96502 0.93059 0.80826 0.90060 0.85994 0.93293 0.88186 0.92628 0.79114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.78 71.98 0.70 -3.29 16 2 C -0.11 -2.98 5.49 30.59 0.17 -2.81 16 3 C 0.16 5.78 2.48 44.17 0.11 5.89 16 4 H 0.02 0.94 7.33 -2.39 -0.02 0.93 16 5 N -0.68 -28.53 5.92 -477.17 -2.82 -31.35 16 6 C 0.23 11.82 2.61 44.17 0.12 11.93 16 7 H -0.03 -1.89 7.34 -2.39 -0.02 -1.91 16 8 C -0.10 -5.18 9.03 71.98 0.65 -4.53 16 9 C -0.54 -29.76 8.59 25.60 0.22 -29.54 16 10 H 0.06 3.22 7.57 -2.91 -0.02 3.20 16 11 C 0.01 0.75 5.30 84.66 0.45 1.20 16 12 N -0.92 -54.04 11.32 21.44 0.24 -53.80 16 13 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 C -0.22 -7.47 3.31 -20.14 -0.07 -7.54 16 18 C 0.07 2.44 11.53 85.24 0.98 3.42 16 19 N -0.33 -11.70 12.42 -57.02 -0.71 -12.41 16 20 N -0.38 -10.96 3.68 -348.07 -1.28 -12.24 16 21 C 0.12 2.33 7.23 86.38 0.62 2.96 16 22 C -0.15 -2.56 10.10 71.98 0.73 -1.83 16 23 C 0.04 1.26 11.36 83.54 0.95 2.21 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.36 6.36 -2.39 -0.02 1.34 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.34 13.69 5.83 -89.70 -0.52 13.17 16 30 H 0.05 2.69 6.07 -2.39 -0.01 2.67 16 31 H 0.02 0.80 6.44 -2.39 -0.02 0.79 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.17 6.21 8.06 -2.91 -0.02 6.19 16 35 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.12 1.56 8.07 -2.39 -0.02 1.54 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.19 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -66.25 323.71 3.57 -62.68 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.48 Total: 23.06 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 5.63 Total: -21.93 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -4.57 Total: -109.80 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.25 3.57 -62.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309937448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.871 kcal (2) G-P(sol) polarization free energy of solvation -66.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds