Wall clock time and date at job start Mon Mar 30 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37094 * 119.99746 * 2 1 4 4 H 1.08000 * 119.99682 * 141.53336 * 3 2 1 5 5 C 1.38945 * 120.00454 * 321.53171 * 3 2 1 6 6 N 1.31411 * 120.00589 * 157.48231 * 5 3 2 7 7 Si 1.86804 * 119.99824 * 337.48604 * 5 3 2 8 8 H 1.48505 * 109.47276 * 95.63701 * 7 5 3 9 9 H 1.48496 * 109.47344 * 215.63866 * 7 5 3 10 10 H 1.48506 * 109.47208 * 335.63773 * 7 5 3 11 11 C 1.34772 * 120.00049 * 179.97438 * 2 1 3 12 12 O 1.21288 * 119.99967 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99880 * 0.02562 * 11 2 1 14 14 H 1.08998 * 109.47236 * 59.99647 * 13 11 2 15 15 C 1.53005 * 109.47040 * 299.99471 * 13 11 2 16 16 C 1.52998 * 109.47186 * 300.00452 * 15 13 11 17 17 C 1.53007 * 109.46833 * 299.99837 * 16 15 13 18 18 C 1.53000 * 109.47339 * 60.00323 * 17 16 15 19 19 C 1.52998 * 109.46895 * 299.99639 * 18 17 16 20 20 H 1.08998 * 109.47731 * 300.00260 * 19 18 17 21 21 C 1.52997 * 109.47361 * 179.97438 * 19 18 17 22 22 C 1.52996 * 117.50236 * 128.61985 * 21 19 18 23 23 C 1.52996 * 60.00326 * 252.51716 * 22 21 19 24 24 H 1.08997 * 109.47063 * 268.83567 * 1 2 3 25 25 H 1.08994 * 109.46899 * 28.83584 * 1 2 3 26 26 H 1.09001 * 109.47136 * 148.83989 * 1 2 3 27 27 H 0.97001 * 120.00142 * 180.02562 * 6 5 3 28 28 H 1.09002 * 109.46742 * 60.00467 * 15 13 11 29 29 H 1.08996 * 109.46977 * 180.02562 * 15 13 11 30 30 H 1.08997 * 109.47410 * 180.02562 * 16 15 13 31 31 H 1.08998 * 109.47208 * 59.99576 * 16 15 13 32 32 H 1.08998 * 109.47010 * 299.99860 * 17 16 15 33 33 H 1.09002 * 109.46695 * 179.97438 * 17 16 15 34 34 H 1.08996 * 109.47031 * 59.99486 * 18 17 16 35 35 H 1.08998 * 109.47368 * 179.97438 * 18 17 16 36 36 H 1.09006 * 115.55498 * 274.33605 * 21 19 18 37 37 H 1.09004 * 117.49497 * 0.02562 * 22 21 19 38 38 H 1.09000 * 117.50415 * 145.01780 * 22 21 19 39 39 H 1.09000 * 117.49620 * 252.50942 * 23 22 21 40 40 H 1.09003 * 117.50138 * 107.49043 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0547 1.2888 0.5818 5 6 1.6820 2.2601 -0.7485 6 7 2.0372 3.4856 -0.4343 7 14 0.5470 1.9602 -2.2016 8 1 -0.8645 2.1207 -1.7687 9 1 0.8494 2.9392 -3.2763 10 1 0.7536 0.5821 -2.7150 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.7590 -2.5302 -0.8896 15 6 0.5054 -2.5531 1.2496 16 6 1.3846 -2.4717 2.4990 17 6 2.3788 -3.6347 2.4996 18 6 3.2589 -3.5539 1.2506 19 6 2.3797 -3.6353 0.0012 20 1 1.8347 -4.5792 0.0011 21 6 3.2596 -3.5539 -1.2478 22 6 3.0751 -4.6358 -2.3138 23 6 4.3258 -4.6356 -1.4325 24 1 -0.3633 -0.0209 1.0274 25 1 -0.3633 0.9002 -0.4956 26 1 -0.3633 -0.8794 -0.5317 27 1 1.7098 4.2345 -0.9567 28 1 -0.2030 -1.7246 1.2491 29 1 -0.0393 -3.4972 1.2498 30 1 0.7577 -2.5297 3.3888 31 1 1.9296 -1.5278 2.4990 32 1 1.8338 -4.5786 2.4996 33 1 3.0055 -3.5764 3.3895 34 1 3.8038 -2.6099 1.2506 35 1 3.9675 -4.3821 1.2512 36 1 3.5001 -2.5468 -1.5888 37 1 2.3265 -5.4054 -2.1254 38 1 3.1938 -4.3407 -3.3563 39 1 5.2674 -4.3404 -1.8953 40 1 4.4003 -5.4053 -0.6643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335529852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:45 Heat of formation + Delta-G solvation = -9.152920 kcal Electronic energy + Delta-G solvation = -20054.528473 eV Core-core repulsion = 17256.110085 eV Total energy + Delta-G solvation = -2798.418388 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15673 -37.32793 -35.76971 -34.75267 -32.14906 -30.57123 -29.96341 -26.45605 -25.19975 -23.09950 -22.70174 -21.85457 -20.22774 -19.83168 -18.06861 -17.05578 -16.07013 -15.52878 -15.28131 -14.99517 -14.22089 -13.79570 -13.73614 -13.35833 -12.96100 -12.68665 -12.55173 -12.21976 -12.09396 -11.84319 -11.60690 -11.33835 -11.27140 -11.13095 -10.80389 -10.63764 -10.34472 -10.19841 -10.04612 -10.01026 -9.82214 -9.55565 -9.31026 -8.95184 -8.16731 -7.63893 -6.37023 -3.93186 3.04835 3.23704 3.28667 3.80961 4.15821 4.17775 4.51779 4.84802 5.02242 5.07056 5.15074 5.32041 5.33593 5.36731 5.60076 5.68572 5.74706 5.80608 5.84687 5.85951 5.91506 5.94741 6.00983 6.07809 6.11142 6.18376 6.23082 6.28847 6.36970 6.39680 6.57287 6.61073 6.64201 6.68622 6.87421 7.12493 7.59673 8.34715 8.57514 9.03274 9.37161 9.86325 10.75391 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.008327 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.270969 B = 3361.616670 C = 3832.911506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.472 5.472 3 C -0.314 4.314 4 H 0.104 0.896 5 C 0.059 3.941 6 N -0.866 5.866 7 Si 0.876 3.124 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.265 1.265 11 C 0.477 3.523 12 O -0.554 6.554 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.121 4.121 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.126 4.126 19 C -0.026 4.026 20 H 0.061 0.939 21 C -0.131 4.131 22 C -0.195 4.195 23 C -0.180 4.180 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.273 0.727 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.347 -14.055 0.990 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.194 5.194 3 C -0.441 4.441 4 H 0.121 0.879 5 C -0.146 4.146 6 N -0.502 5.502 7 Si 0.704 3.296 8 H -0.204 1.204 9 H -0.215 1.215 10 H -0.189 1.189 11 C 0.266 3.734 12 O -0.436 6.436 13 C -0.124 4.124 14 H 0.099 0.901 15 C -0.159 4.159 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.163 4.163 19 C -0.045 4.045 20 H 0.079 0.921 21 C -0.149 4.149 22 C -0.232 4.232 23 C -0.217 4.217 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.736 -13.820 0.957 14.348 hybrid contribution -0.802 0.038 -0.920 1.221 sum -4.538 -13.782 0.037 14.510 Atomic orbital electron populations 1.22120 0.83944 1.01107 1.00801 1.43664 1.03762 1.05757 1.66208 1.19010 1.10944 0.85910 1.28272 0.87892 1.25366 0.97279 0.94805 0.97164 1.69772 1.44339 0.98157 1.37955 0.86966 0.80030 0.79013 0.83578 1.20380 1.21540 1.18931 1.20136 0.88084 0.84408 0.80812 1.90456 1.13810 1.86539 1.52806 1.21309 0.97381 0.94806 0.98873 0.90066 1.21768 0.97879 1.02257 0.93993 1.21528 0.97651 0.99690 0.96959 1.21511 0.97690 0.97762 0.98257 1.21821 0.97707 1.04291 0.92441 1.20388 0.94354 0.95975 0.93736 0.92090 1.22595 1.00001 0.96031 0.96298 1.23013 1.00665 1.02939 0.96556 1.22808 0.93524 1.02613 1.02772 0.92839 0.92138 0.92587 0.91718 0.90457 0.92055 0.92556 0.91207 0.93048 0.92614 0.88066 0.93151 0.86008 0.89521 0.89510 0.89389 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 7.58 59.85 0.45 1.71 16 2 N -0.47 -11.24 2.55 -122.20 -0.31 -11.55 16 3 C -0.31 -8.85 9.33 -14.94 -0.14 -8.99 16 4 H 0.10 3.26 7.93 -52.49 -0.42 2.85 16 5 C 0.06 1.64 5.29 -17.47 -0.09 1.55 16 6 N -0.87 -25.18 13.96 55.50 0.77 -24.40 16 7 Si 0.88 20.72 25.10 -169.99 -4.27 16.46 16 8 H -0.28 -6.09 6.69 56.52 0.38 -5.71 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 11 C 0.48 10.62 5.05 -10.99 -0.06 10.57 16 12 O -0.55 -13.97 11.59 5.55 0.06 -13.90 16 13 C -0.10 -1.75 1.74 -91.76 -0.16 -1.91 16 14 H 0.08 1.33 7.40 -51.93 -0.38 0.94 16 15 C -0.12 -1.79 5.10 -26.73 -0.14 -1.92 16 16 C -0.12 -1.84 5.70 -26.73 -0.15 -1.99 16 17 C -0.11 -1.63 5.92 -26.73 -0.16 -1.78 16 18 C -0.13 -2.02 4.77 -26.73 -0.13 -2.15 16 19 C -0.03 -0.41 2.09 -90.62 -0.19 -0.60 16 20 H 0.06 0.86 7.90 -51.93 -0.41 0.45 16 21 C -0.13 -2.19 4.50 -90.62 -0.41 -2.59 16 22 C -0.19 -2.68 10.18 -26.74 -0.27 -2.95 16 23 C -0.18 -2.55 9.73 -26.73 -0.26 -2.81 16 24 H 0.05 0.94 6.87 -51.93 -0.36 0.58 16 25 H 0.06 1.26 3.47 -51.93 -0.18 1.08 16 26 H 0.06 0.93 6.10 -51.93 -0.32 0.61 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.08 1.12 4.51 -51.93 -0.23 0.89 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.29 7.22 -51.93 -0.37 0.92 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 2.02 5.51 -51.93 -0.29 1.73 16 35 H 0.05 0.74 7.29 -51.93 -0.38 0.36 16 36 H 0.12 2.49 6.10 -51.93 -0.32 2.17 16 37 H 0.09 1.06 8.05 -51.93 -0.42 0.65 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.14 7.61 -51.93 -0.40 0.74 16 LS Contribution 294.20 15.07 4.43 4.43 Total: -1.00 -30.00 294.20 -7.17 -37.17 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.16 Total: 5.68 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.70 Total: -13.88 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.46 Total: -35.95 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.06 Total: -13.90 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.27 Total: 16.46 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.00 -7.17 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335529852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.015 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds