Wall clock time and date at job start Mon Mar 30 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37094 * 119.99746 * 2 1 4 4 H 1.08000 * 119.99682 * 141.53336 * 3 2 1 5 5 C 1.38945 * 120.00454 * 321.53171 * 3 2 1 6 6 N 1.31411 * 120.00589 * 157.48231 * 5 3 2 7 7 Si 1.86804 * 119.99824 * 337.48604 * 5 3 2 8 8 H 1.48505 * 109.47276 * 95.63701 * 7 5 3 9 9 H 1.48496 * 109.47344 * 215.63866 * 7 5 3 10 10 H 1.48506 * 109.47208 * 335.63773 * 7 5 3 11 11 C 1.34772 * 120.00049 * 179.97438 * 2 1 3 12 12 O 1.21288 * 119.99967 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99880 * 0.02562 * 11 2 1 14 14 H 1.08998 * 109.47236 * 59.99647 * 13 11 2 15 15 C 1.53005 * 109.47040 * 299.99471 * 13 11 2 16 16 C 1.52998 * 109.47186 * 300.00452 * 15 13 11 17 17 C 1.53007 * 109.46833 * 299.99837 * 16 15 13 18 18 C 1.53000 * 109.47339 * 60.00323 * 17 16 15 19 19 C 1.52998 * 109.46895 * 299.99639 * 18 17 16 20 20 H 1.08998 * 109.47731 * 300.00260 * 19 18 17 21 21 C 1.52997 * 109.47361 * 179.97438 * 19 18 17 22 22 C 1.52996 * 117.50236 * 128.61985 * 21 19 18 23 23 C 1.52996 * 60.00326 * 252.51716 * 22 21 19 24 24 H 1.08997 * 109.47063 * 268.83567 * 1 2 3 25 25 H 1.08994 * 109.46899 * 28.83584 * 1 2 3 26 26 H 1.09001 * 109.47136 * 148.83989 * 1 2 3 27 27 H 0.97001 * 120.00142 * 180.02562 * 6 5 3 28 28 H 1.09002 * 109.46742 * 60.00467 * 15 13 11 29 29 H 1.08996 * 109.46977 * 180.02562 * 15 13 11 30 30 H 1.08997 * 109.47410 * 180.02562 * 16 15 13 31 31 H 1.08998 * 109.47208 * 59.99576 * 16 15 13 32 32 H 1.08998 * 109.47010 * 299.99860 * 17 16 15 33 33 H 1.09002 * 109.46695 * 179.97438 * 17 16 15 34 34 H 1.08996 * 109.47031 * 59.99486 * 18 17 16 35 35 H 1.08998 * 109.47368 * 179.97438 * 18 17 16 36 36 H 1.09006 * 115.55498 * 274.33605 * 21 19 18 37 37 H 1.09004 * 117.49497 * 0.02562 * 22 21 19 38 38 H 1.09000 * 117.50415 * 145.01780 * 22 21 19 39 39 H 1.09000 * 117.49620 * 252.50942 * 23 22 21 40 40 H 1.09003 * 117.50138 * 107.49043 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0547 1.2888 0.5818 5 6 1.6820 2.2601 -0.7485 6 7 2.0372 3.4856 -0.4343 7 14 0.5470 1.9602 -2.2016 8 1 -0.8645 2.1207 -1.7687 9 1 0.8494 2.9392 -3.2763 10 1 0.7536 0.5821 -2.7150 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.7590 -2.5302 -0.8896 15 6 0.5054 -2.5531 1.2496 16 6 1.3846 -2.4717 2.4990 17 6 2.3788 -3.6347 2.4996 18 6 3.2589 -3.5539 1.2506 19 6 2.3797 -3.6353 0.0012 20 1 1.8347 -4.5792 0.0011 21 6 3.2596 -3.5539 -1.2478 22 6 3.0751 -4.6358 -2.3138 23 6 4.3258 -4.6356 -1.4325 24 1 -0.3633 -0.0209 1.0274 25 1 -0.3633 0.9002 -0.4956 26 1 -0.3633 -0.8794 -0.5317 27 1 1.7098 4.2345 -0.9567 28 1 -0.2030 -1.7246 1.2491 29 1 -0.0393 -3.4972 1.2498 30 1 0.7577 -2.5297 3.3888 31 1 1.9296 -1.5278 2.4990 32 1 1.8338 -4.5786 2.4996 33 1 3.0055 -3.5764 3.3895 34 1 3.8038 -2.6099 1.2506 35 1 3.9675 -4.3821 1.2512 36 1 3.5001 -2.5468 -1.5888 37 1 2.3265 -5.4054 -2.1254 38 1 3.1938 -4.3407 -3.3563 39 1 5.2674 -4.3404 -1.8953 40 1 4.4003 -5.4053 -0.6643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335529852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:44 Heat of formation + Delta-G solvation = -27.542195 kcal Electronic energy + Delta-G solvation = -20055.325892 eV Core-core repulsion = 17256.110085 eV Total energy + Delta-G solvation = -2799.215807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64191 -38.80877 -37.01022 -36.59839 -34.17148 -31.94781 -31.18129 -28.15905 -27.04759 -24.37270 -24.02767 -23.03476 -21.62929 -21.05994 -19.71622 -19.03802 -17.72925 -17.12613 -16.69620 -16.41513 -15.61983 -15.45651 -15.05554 -14.86214 -14.40127 -14.32526 -14.13359 -13.77670 -13.54943 -13.26228 -12.96352 -12.78006 -12.65243 -12.46118 -12.29908 -12.20918 -11.86338 -11.73935 -11.54670 -11.22651 -11.16595 -10.96755 -10.74612 -10.46323 -9.89719 -9.57138 -8.50804 -6.11191 1.17931 1.31294 1.43164 2.08888 2.17801 2.80033 2.99407 3.03383 3.65232 3.83280 3.90439 4.15151 4.17308 4.20679 4.23119 4.35013 4.46467 4.56623 4.58381 4.63744 4.71168 4.74778 4.76000 4.81434 4.85301 5.00041 5.02078 5.10366 5.17248 5.31105 5.35942 5.39506 5.44415 5.49334 5.56537 5.58475 5.81338 6.08354 6.63754 7.01946 7.39170 8.01600 8.67341 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.008327 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.270969 B = 3361.616670 C = 3832.911506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.490 5.490 3 C -0.329 4.329 4 H 0.038 0.962 5 C 0.009 3.991 6 N -0.915 5.915 7 Si 0.951 3.049 8 H -0.239 1.239 9 H -0.292 1.292 10 H -0.261 1.261 11 C 0.472 3.528 12 O -0.595 6.595 13 C -0.096 4.096 14 H 0.101 0.899 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.125 4.125 19 C -0.021 4.021 20 H 0.100 0.900 21 C -0.162 4.162 22 C -0.170 4.170 23 C -0.177 4.177 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.278 0.722 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 -17.774 0.201 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.213 5.213 3 C -0.457 4.457 4 H 0.056 0.944 5 C -0.193 4.193 6 N -0.553 5.553 7 Si 0.775 3.225 8 H -0.164 1.164 9 H -0.219 1.219 10 H -0.185 1.185 11 C 0.263 3.737 12 O -0.479 6.479 13 C -0.117 4.117 14 H 0.118 0.882 15 C -0.155 4.155 16 C -0.160 4.160 17 C -0.147 4.147 18 C -0.162 4.162 19 C -0.039 4.039 20 H 0.118 0.882 21 C -0.181 4.181 22 C -0.207 4.207 23 C -0.214 4.214 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.167 -17.552 0.185 18.960 hybrid contribution 0.442 1.193 -0.588 1.401 sum -6.725 -16.359 -0.403 17.692 Atomic orbital electron populations 1.22337 0.80938 1.02340 1.02664 1.43799 1.05618 1.04663 1.67196 1.18588 1.10041 0.88612 1.28459 0.94377 1.26163 0.99607 0.93941 0.99562 1.69894 1.46715 0.99311 1.39426 0.85793 0.79501 0.78630 0.78605 1.16405 1.21901 1.18529 1.21232 0.88005 0.85936 0.78508 1.90456 1.16250 1.87486 1.53688 1.21379 0.97699 0.91476 1.01151 0.88155 1.21825 0.97241 1.04707 0.91717 1.21536 0.98012 0.97674 0.98770 1.21502 0.97373 0.98802 0.97050 1.21736 0.98290 1.01975 0.94220 1.20431 0.93959 0.96830 0.92685 0.88196 1.22390 1.02722 0.94542 0.98420 1.23106 1.00424 1.01346 0.95802 1.22882 0.93367 1.01716 1.03401 0.90884 0.93248 0.88606 0.91237 0.90190 0.87626 0.90099 0.96315 0.89490 0.92662 0.93276 0.91834 0.91087 0.86673 0.89419 0.90125 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.20 7.58 127.77 0.97 3.17 16 2 N -0.49 -23.87 2.55 -658.91 -1.68 -25.55 16 3 C -0.33 -19.77 9.33 84.04 0.78 -18.99 16 4 H 0.04 2.70 7.93 -2.91 -0.02 2.68 16 5 C 0.01 0.50 5.29 84.93 0.45 0.95 16 6 N -0.92 -55.89 13.96 21.66 0.30 -55.58 16 7 Si 0.95 42.99 25.10 68.60 1.72 44.71 16 8 H -0.24 -9.37 6.69 99.48 0.67 -8.71 16 9 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 C 0.47 21.62 5.05 87.66 0.44 22.06 16 12 O -0.60 -32.34 11.59 -3.05 -0.04 -32.38 16 13 C -0.10 -3.05 1.74 -11.53 -0.02 -3.07 16 14 H 0.10 2.85 7.40 -2.39 -0.02 2.83 16 15 C -0.12 -2.97 5.10 30.60 0.16 -2.82 16 16 C -0.12 -3.48 5.70 30.60 0.17 -3.31 16 17 C -0.11 -2.83 5.92 30.60 0.18 -2.65 16 18 C -0.12 -3.91 4.77 30.59 0.15 -3.76 16 19 C -0.02 -0.60 2.09 -10.79 -0.02 -0.62 16 20 H 0.10 2.19 7.90 -2.39 -0.02 2.17 16 21 C -0.16 -5.25 4.50 -10.79 -0.05 -5.30 16 22 C -0.17 -4.13 10.18 30.59 0.31 -3.81 16 23 C -0.18 -4.70 9.73 30.59 0.30 -4.40 16 24 H 0.07 2.39 6.87 -2.39 -0.02 2.38 16 25 H 0.05 1.94 3.47 -2.39 -0.01 1.93 16 26 H 0.10 2.76 6.10 -2.39 -0.01 2.74 16 27 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.08 1.99 4.51 -2.39 -0.01 1.98 16 29 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.02 0.70 7.22 -2.39 -0.02 0.68 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.05 2.07 5.51 -2.39 -0.01 2.06 16 35 H 0.06 1.77 7.29 -2.39 -0.02 1.75 16 36 H 0.07 3.04 6.10 -2.38 -0.01 3.03 16 37 H 0.12 2.18 8.05 -2.38 -0.02 2.16 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.11 2.42 7.61 -2.39 -0.02 2.40 16 Total: -1.00 -73.93 294.20 5.11 -68.82 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.98 Total: 22.52 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 3.82 Total: -22.54 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -1.38 Total: -81.14 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.04 Total: -32.38 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.72 Total: 44.71 kcal Total: -73.93 5.11 -68.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335529852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.275 kcal (2) G-P(sol) polarization free energy of solvation -73.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds