Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47378 * 2 1 4 4 C 1.46503 * 119.99548 * 265.14436 * 3 2 1 5 5 C 1.50697 * 109.47100 * 276.69972 * 4 3 2 6 6 H 1.08003 * 119.99950 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99776 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99484 * 180.02562 * 7 5 4 9 9 Si 1.86790 * 120.00278 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47546 * 90.00003 * 9 7 5 11 11 H 1.48497 * 109.47393 * 210.00306 * 9 7 5 12 12 H 1.48508 * 109.47196 * 329.99791 * 9 7 5 13 13 C 1.34771 * 120.00168 * 85.14014 * 3 2 1 14 14 O 1.21281 * 119.99899 * 5.78141 * 13 3 2 15 15 C 1.50702 * 120.00000 * 185.78321 * 13 3 2 16 16 C 1.52994 * 110.81458 * 299.31412 * 15 13 3 17 17 C 1.54890 * 110.75405 * 175.98210 * 15 13 3 18 18 C 1.54269 * 104.19724 * 279.62437 * 17 15 13 19 19 H 1.09006 * 117.40958 * 116.36764 * 18 17 15 20 20 C 1.52998 * 118.20007 * 271.00515 * 18 17 15 21 21 C 1.53875 * 106.59779 * 336.39132 * 18 17 15 22 22 H 1.09006 * 121.32769 * 137.48960 * 21 18 17 23 23 C 1.54270 * 106.59987 * 0.02562 * 21 18 17 24 24 H 1.08993 * 109.47189 * 184.96416 * 1 2 3 25 25 H 1.09000 * 109.47222 * 304.96764 * 1 2 3 26 26 H 1.09003 * 109.46711 * 64.96963 * 1 2 3 27 27 H 1.09004 * 109.47018 * 239.99675 * 2 1 3 28 28 H 1.09002 * 109.46703 * 119.99764 * 2 1 3 29 29 H 1.08998 * 109.47578 * 36.70924 * 4 3 2 30 30 H 1.09004 * 109.46603 * 156.70360 * 4 3 2 31 31 H 0.96998 * 119.99172 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47794 * 306.34690 * 16 15 13 33 33 H 1.08999 * 109.47162 * 66.34431 * 16 15 13 34 34 H 1.09002 * 109.47225 * 186.34235 * 16 15 13 35 35 H 1.09000 * 110.48439 * 160.94611 * 17 15 13 36 36 H 1.09003 * 110.48702 * 38.30650 * 17 15 13 37 37 H 1.09006 * 117.45853 * 202.14928 * 20 18 17 38 38 H 1.09006 * 117.45876 * 346.94852 * 20 18 17 39 39 H 1.09001 * 110.48209 * 264.93333 * 23 21 18 40 40 H 1.09002 * 110.59905 * 142.34149 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3639 2.0359 -1.2643 5 6 3.7666 1.6540 -1.6609 6 1 4.3431 0.9896 -1.0341 7 6 4.3142 2.1527 -2.8239 8 7 5.5383 1.8189 -3.1702 9 14 3.3175 3.3023 -3.9075 10 1 3.5533 4.7070 -3.4876 11 1 3.7328 3.1324 -5.3230 12 1 1.8737 2.9813 -3.7734 13 6 2.1499 2.0495 1.1629 14 8 1.9650 1.4766 2.2158 15 6 2.5266 3.5087 1.1551 16 6 3.8914 3.7143 0.4950 17 6 2.5197 4.0851 2.5927 18 6 1.0306 4.3680 2.8798 19 1 0.5590 3.8046 3.6850 20 6 0.4675 5.7374 2.4945 21 6 0.3441 4.5379 1.5133 22 1 -0.6293 4.0920 1.3087 23 6 1.4397 4.3517 0.4434 24 1 -0.3633 -1.0237 0.0889 25 1 -0.3634 0.5890 0.8421 26 1 -0.3633 0.4348 -0.9312 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6675 1.7181 -2.0402 30 1 2.3026 3.1173 -1.1419 31 1 5.9235 2.1701 -3.9882 32 1 4.6286 3.0720 0.9768 33 1 3.8251 3.4610 -0.5631 34 1 4.1929 4.7564 0.6008 35 1 3.0987 5.0076 2.6366 36 1 2.9122 3.3534 3.2989 37 1 -0.4338 6.0727 3.0076 38 1 1.1813 6.5206 2.2390 39 1 1.8446 5.3172 0.1400 40 1 1.0454 3.8160 -0.4201 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339085377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = -5.036183 kcal Electronic energy + Delta-G solvation = -20075.717979 eV Core-core repulsion = 17277.478106 eV Total energy + Delta-G solvation = -2798.239873 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44245 -37.87030 -35.36231 -33.41317 -32.52267 -30.32453 -27.98830 -27.76715 -26.34907 -23.57024 -22.66287 -21.36920 -20.50332 -19.52895 -17.79363 -17.04188 -16.13676 -15.76361 -15.23510 -14.59289 -14.28235 -13.58463 -13.46490 -13.08162 -12.97531 -12.67717 -12.41965 -12.31662 -11.98732 -11.70773 -11.62430 -11.42055 -11.22680 -11.05385 -10.88650 -10.69252 -10.40754 -10.34893 -10.25809 -9.84529 -9.78669 -9.53489 -9.50860 -8.81372 -8.71014 -7.69911 -6.24379 -4.23507 3.14239 3.22690 3.24587 3.40458 3.76969 3.91088 4.23203 4.71570 4.88081 5.02974 5.05572 5.22287 5.43645 5.55814 5.62221 5.70323 5.71691 5.79906 5.82894 5.86048 5.94529 5.98762 6.19930 6.24547 6.31749 6.38267 6.40355 6.40524 6.49485 6.50290 6.57888 6.64374 6.67756 6.72632 7.26512 7.40810 7.46168 8.15817 8.44742 8.82000 9.00135 9.34261 10.88019 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.009164 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.554569 B = 3054.537518 C = 3597.819713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.589 5.589 4 C 0.192 3.808 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.888 5.888 9 Si 0.863 3.137 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.537 3.463 14 O -0.567 6.567 15 C -0.076 4.076 16 C -0.160 4.160 17 C -0.074 4.074 18 C -0.152 4.152 19 H 0.105 0.895 20 C -0.158 4.158 21 C -0.171 4.171 22 H 0.105 0.895 23 C -0.090 4.090 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.049 0.951 31 H 0.267 0.733 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 5.438 5.822 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.319 5.319 4 C 0.071 3.929 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.525 5.525 9 Si 0.689 3.311 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.187 1.187 13 C 0.325 3.675 14 O -0.447 6.447 15 C -0.079 4.079 16 C -0.217 4.217 17 C -0.112 4.112 18 C -0.170 4.170 19 H 0.124 0.876 20 C -0.195 4.195 21 C -0.189 4.189 22 H 0.123 0.877 23 C -0.127 4.127 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.952 5.130 6.188 12.031 hybrid contribution -0.394 0.507 -0.793 1.021 sum -9.346 5.637 5.395 12.175 Atomic orbital electron populations 1.22118 0.97052 1.01302 1.01635 1.21228 0.93027 0.83751 1.02794 1.47831 1.63361 1.13206 1.07501 1.20249 0.96873 0.94330 0.81412 1.21342 0.97359 1.30614 1.07879 0.90258 1.24866 0.94744 0.96116 0.97021 1.69891 1.14133 1.44082 1.24440 0.87050 0.81286 0.81998 0.80778 1.19529 1.20804 1.18750 1.20100 0.75887 0.88304 0.83211 1.90558 1.52877 1.69975 1.31299 1.21772 0.97495 0.92341 0.96275 1.22367 0.93048 1.00439 1.05821 1.21891 0.93741 1.00214 0.95334 1.23187 0.96109 0.98962 0.98769 0.87644 1.23410 1.02376 0.91305 1.02364 1.23595 0.99757 1.03356 0.92164 0.87682 1.22228 0.93622 0.99851 0.97036 0.92354 0.92845 0.92904 0.90119 0.91163 0.95451 0.93328 0.92329 0.92565 0.86479 0.93381 0.91265 0.90249 0.88867 0.89131 0.90624 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.21 37.16 0.38 -2.17 16 2 C 0.12 2.15 6.14 -4.04 -0.02 2.12 16 3 N -0.59 -12.17 2.45 -175.05 -0.43 -12.60 16 4 C 0.19 4.17 3.01 -5.19 -0.02 4.16 16 5 C -0.53 -13.62 7.63 -34.44 -0.26 -13.88 16 6 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 7 C 0.08 2.00 5.36 -17.82 -0.10 1.90 16 8 N -0.89 -25.19 13.96 55.43 0.77 -24.42 16 9 Si 0.86 19.22 27.47 -169.99 -4.67 14.55 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 13 C 0.54 11.12 6.18 -10.99 -0.07 11.05 16 14 O -0.57 -12.81 15.20 5.56 0.08 -12.72 16 15 C -0.08 -1.37 0.55 -153.68 -0.08 -1.45 16 16 C -0.16 -3.07 7.87 37.15 0.29 -2.77 16 17 C -0.07 -1.20 5.25 -25.07 -0.13 -1.33 16 18 C -0.15 -2.25 6.54 -89.50 -0.59 -2.84 16 19 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 20 C -0.16 -1.95 10.21 -25.43 -0.26 -2.21 16 21 C -0.17 -2.49 6.86 -88.19 -0.61 -3.10 16 22 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 23 C -0.09 -1.45 4.72 -25.08 -0.12 -1.57 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.08 1.49 8.04 -51.93 -0.42 1.08 16 28 H 0.07 1.35 7.50 -51.93 -0.39 0.96 16 29 H 0.03 0.60 7.18 -51.93 -0.37 0.22 16 30 H 0.05 1.01 2.57 -51.93 -0.13 0.88 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.12 2.53 3.41 -51.93 -0.18 2.36 16 34 H 0.05 0.80 8.03 -51.93 -0.42 0.38 16 35 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 36 H 0.08 1.38 7.40 -51.93 -0.38 1.00 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.12 8.05 -51.93 -0.42 0.71 16 40 H 0.08 1.39 5.74 -51.93 -0.30 1.09 16 LS Contribution 307.75 15.07 4.64 4.64 Total: -1.00 -28.43 307.75 -7.57 -36.01 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.39 Total: 6.62 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.58 Total: -12.08 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.34 Total: -37.02 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.67 Total: 14.55 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.43 -7.57 -36.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339085377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.970 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds