Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47378 * 2 1 4 4 C 1.46503 * 119.99548 * 265.14436 * 3 2 1 5 5 C 1.50697 * 109.47100 * 276.69972 * 4 3 2 6 6 H 1.08003 * 119.99950 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99776 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99484 * 180.02562 * 7 5 4 9 9 Si 1.86790 * 120.00278 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47546 * 90.00003 * 9 7 5 11 11 H 1.48497 * 109.47393 * 210.00306 * 9 7 5 12 12 H 1.48508 * 109.47196 * 329.99791 * 9 7 5 13 13 C 1.34771 * 120.00168 * 85.14014 * 3 2 1 14 14 O 1.21281 * 119.99899 * 5.78141 * 13 3 2 15 15 C 1.50702 * 120.00000 * 185.78321 * 13 3 2 16 16 C 1.52994 * 110.81458 * 299.31412 * 15 13 3 17 17 C 1.54890 * 110.75405 * 175.98210 * 15 13 3 18 18 C 1.54269 * 104.19724 * 279.62437 * 17 15 13 19 19 H 1.09006 * 117.40958 * 116.36764 * 18 17 15 20 20 C 1.52998 * 118.20007 * 271.00515 * 18 17 15 21 21 C 1.53875 * 106.59779 * 336.39132 * 18 17 15 22 22 H 1.09006 * 121.32769 * 137.48960 * 21 18 17 23 23 C 1.54270 * 106.59987 * 0.02562 * 21 18 17 24 24 H 1.08993 * 109.47189 * 184.96416 * 1 2 3 25 25 H 1.09000 * 109.47222 * 304.96764 * 1 2 3 26 26 H 1.09003 * 109.46711 * 64.96963 * 1 2 3 27 27 H 1.09004 * 109.47018 * 239.99675 * 2 1 3 28 28 H 1.09002 * 109.46703 * 119.99764 * 2 1 3 29 29 H 1.08998 * 109.47578 * 36.70924 * 4 3 2 30 30 H 1.09004 * 109.46603 * 156.70360 * 4 3 2 31 31 H 0.96998 * 119.99172 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47794 * 306.34690 * 16 15 13 33 33 H 1.08999 * 109.47162 * 66.34431 * 16 15 13 34 34 H 1.09002 * 109.47225 * 186.34235 * 16 15 13 35 35 H 1.09000 * 110.48439 * 160.94611 * 17 15 13 36 36 H 1.09003 * 110.48702 * 38.30650 * 17 15 13 37 37 H 1.09006 * 117.45853 * 202.14928 * 20 18 17 38 38 H 1.09006 * 117.45876 * 346.94852 * 20 18 17 39 39 H 1.09001 * 110.48209 * 264.93333 * 23 21 18 40 40 H 1.09002 * 110.59905 * 142.34149 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3639 2.0359 -1.2643 5 6 3.7666 1.6540 -1.6609 6 1 4.3431 0.9896 -1.0341 7 6 4.3142 2.1527 -2.8239 8 7 5.5383 1.8189 -3.1702 9 14 3.3175 3.3023 -3.9075 10 1 3.5533 4.7070 -3.4876 11 1 3.7328 3.1324 -5.3230 12 1 1.8737 2.9813 -3.7734 13 6 2.1499 2.0495 1.1629 14 8 1.9650 1.4766 2.2158 15 6 2.5266 3.5087 1.1551 16 6 3.8914 3.7143 0.4950 17 6 2.5197 4.0851 2.5927 18 6 1.0306 4.3680 2.8798 19 1 0.5590 3.8046 3.6850 20 6 0.4675 5.7374 2.4945 21 6 0.3441 4.5379 1.5133 22 1 -0.6293 4.0920 1.3087 23 6 1.4397 4.3517 0.4434 24 1 -0.3633 -1.0237 0.0889 25 1 -0.3634 0.5890 0.8421 26 1 -0.3633 0.4348 -0.9312 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6675 1.7181 -2.0402 30 1 2.3026 3.1173 -1.1419 31 1 5.9235 2.1701 -3.9882 32 1 4.6286 3.0720 0.9768 33 1 3.8251 3.4610 -0.5631 34 1 4.1929 4.7564 0.6008 35 1 3.0987 5.0076 2.6366 36 1 2.9122 3.3534 3.2989 37 1 -0.4338 6.0727 3.0076 38 1 1.1813 6.5206 2.2390 39 1 1.8446 5.3172 0.1400 40 1 1.0454 3.8160 -0.4201 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339085377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = -20.608170 kcal Electronic energy + Delta-G solvation = -20076.393231 eV Core-core repulsion = 17277.478106 eV Total energy + Delta-G solvation = -2798.915125 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.89219 -39.25613 -37.08795 -34.94022 -34.31313 -31.84223 -29.59128 -29.22668 -27.72333 -25.05906 -24.52267 -22.53494 -21.89655 -20.72534 -19.38847 -19.01433 -17.55347 -17.37529 -16.61672 -16.28510 -15.90026 -15.08282 -14.81191 -14.66654 -14.53122 -14.34151 -13.80290 -13.55915 -13.43283 -13.27950 -13.12124 -12.83571 -12.68362 -12.56163 -12.38155 -12.17639 -12.00227 -11.86182 -11.67129 -11.61677 -11.26186 -10.87912 -10.80359 -10.67483 -10.29287 -9.40808 -8.27567 -6.32089 1.40912 1.43044 1.51760 1.77813 2.31026 2.35834 2.70132 3.05817 3.52222 3.63821 3.70352 3.96332 4.17994 4.25177 4.36002 4.40247 4.45219 4.50470 4.51589 4.55930 4.68684 4.78328 4.84666 4.90566 4.91282 4.96547 4.98842 5.01502 5.05447 5.21222 5.26085 5.26926 5.30840 5.42848 5.46614 5.67915 5.77907 6.20894 6.66243 6.73138 7.25758 7.39107 8.88695 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.009164 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.554569 B = 3054.537518 C = 3597.819713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.203 3.797 5 C -0.528 4.528 6 H 0.026 0.974 7 C 0.023 3.977 8 N -0.941 5.941 9 Si 0.927 3.073 10 H -0.252 1.252 11 H -0.287 1.287 12 H -0.238 1.238 13 C 0.529 3.471 14 O -0.592 6.592 15 C -0.080 4.080 16 C -0.154 4.154 17 C -0.071 4.071 18 C -0.169 4.169 19 H 0.098 0.902 20 C -0.123 4.123 21 C -0.180 4.180 22 H 0.108 0.892 23 C -0.088 4.088 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.268 0.732 32 H 0.029 0.971 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.482 8.003 5.515 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 N -0.325 5.325 4 C 0.081 3.919 5 C -0.567 4.567 6 H 0.045 0.955 7 C -0.176 4.176 8 N -0.580 5.580 9 Si 0.749 3.251 10 H -0.176 1.176 11 H -0.213 1.213 12 H -0.161 1.161 13 C 0.318 3.682 14 O -0.474 6.474 15 C -0.083 4.083 16 C -0.211 4.211 17 C -0.109 4.109 18 C -0.187 4.187 19 H 0.116 0.884 20 C -0.160 4.160 21 C -0.198 4.198 22 H 0.126 0.874 23 C -0.125 4.125 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.444 7.687 5.899 14.995 hybrid contribution 0.467 -0.413 -0.613 0.874 sum -10.977 7.274 5.285 14.190 Atomic orbital electron populations 1.21993 0.94127 1.02935 1.01628 1.21379 0.95410 0.82890 1.01900 1.47957 1.63331 1.13909 1.07332 1.20111 0.94380 0.95434 0.81966 1.21370 0.98820 1.29327 1.07142 0.95528 1.25712 0.95631 0.97831 0.98470 1.70055 1.16456 1.46174 1.25336 0.86011 0.80753 0.80292 0.78007 1.17638 1.21299 1.16148 1.20681 0.75224 0.89570 0.82712 1.90534 1.54003 1.70855 1.32024 1.21839 0.97413 0.90930 0.98083 1.22247 0.93362 1.01616 1.03890 1.21847 0.95367 1.00329 0.93325 1.23133 0.94918 1.01704 0.98973 0.88413 1.23539 1.02963 0.89994 0.99488 1.23605 0.99262 1.05607 0.91298 0.87436 1.22201 0.93312 1.00037 0.96960 0.89752 0.93821 0.91948 0.90569 0.92550 0.94516 0.91393 0.92300 0.95209 0.88847 0.90435 0.89106 0.92559 0.86506 0.87672 0.88643 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 10.21 71.98 0.73 -3.71 16 2 C 0.11 4.03 6.14 86.38 0.53 4.56 16 3 N -0.60 -24.80 2.45 -826.14 -2.03 -26.82 16 4 C 0.20 8.66 3.01 85.63 0.26 8.92 16 5 C -0.53 -27.68 7.63 25.60 0.20 -27.49 16 6 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 7 C 0.02 1.20 5.36 84.65 0.45 1.65 16 8 N -0.94 -55.00 13.96 21.45 0.30 -54.70 16 9 Si 0.93 38.52 27.47 68.60 1.88 40.40 16 10 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 11 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.24 -8.91 6.54 99.48 0.65 -8.25 16 13 C 0.53 22.10 6.18 87.66 0.54 22.64 16 14 O -0.59 -27.37 15.20 -3.03 -0.05 -27.42 16 15 C -0.08 -2.80 0.55 -51.65 -0.03 -2.83 16 16 C -0.15 -5.86 7.87 71.98 0.57 -5.29 16 17 C -0.07 -2.20 5.25 31.67 0.17 -2.03 16 18 C -0.17 -4.61 6.54 -10.07 -0.07 -4.68 16 19 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 20 C -0.12 -2.49 10.21 31.44 0.32 -2.17 16 21 C -0.18 -4.68 6.86 -9.22 -0.06 -4.74 16 22 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 23 C -0.09 -2.58 4.72 31.66 0.15 -2.43 16 24 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 2.88 8.04 -2.39 -0.02 2.86 16 28 H 0.06 2.24 7.50 -2.39 -0.02 2.23 16 29 H 0.04 1.52 7.18 -2.39 -0.02 1.50 16 30 H 0.07 2.70 2.57 -2.39 -0.01 2.69 16 31 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 4.02 3.41 -2.39 -0.01 4.01 16 34 H 0.08 2.43 8.03 -2.39 -0.02 2.41 16 35 H 0.09 2.37 7.96 -2.39 -0.02 2.35 16 36 H 0.06 1.98 7.40 -2.39 -0.02 1.96 16 37 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.10 1.87 8.14 -2.38 -0.02 1.86 16 39 H 0.10 2.43 8.05 -2.39 -0.02 2.41 16 40 H 0.07 2.29 5.74 -2.39 -0.01 2.27 16 Total: -1.00 -63.93 307.75 4.83 -59.10 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.96 Total: 27.04 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 3.76 Total: -17.59 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.73 Total: -81.53 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.05 Total: -27.42 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.88 Total: 40.40 kcal Total: -63.93 4.83 -59.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339085377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.489 kcal (2) G-P(sol) polarization free energy of solvation -63.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds