Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47025 * 2 1 4 4 C 1.37097 * 120.00327 * 94.99692 * 3 2 1 5 5 H 1.07994 * 120.00317 * 213.91596 * 4 3 2 6 6 C 1.38950 * 119.99543 * 33.91553 * 4 3 2 7 7 N 1.31411 * 120.00159 * 22.14216 * 6 4 3 8 8 Si 1.86799 * 119.99664 * 202.13945 * 6 4 3 9 9 H 1.48501 * 109.47219 * 60.00069 * 8 6 4 10 10 H 1.48498 * 109.46924 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47419 * 300.00159 * 8 6 4 12 12 C 1.34785 * 119.99673 * 275.00114 * 3 2 1 13 13 O 1.21289 * 119.99549 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00163 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47304 * 180.02562 * 14 12 3 16 16 H 1.08995 * 110.35869 * 307.33249 * 15 14 12 17 17 C 1.54588 * 110.40021 * 69.78072 * 15 14 12 18 18 C 1.55929 * 104.64305 * 118.79288 * 17 15 14 19 19 H 1.08991 * 116.52663 * 199.60277 * 18 17 15 20 20 C 1.55923 * 104.49696 * 70.27436 * 18 17 15 21 21 C 1.54579 * 104.64728 * 289.72383 * 20 18 17 22 22 C 1.55923 * 104.64210 * 359.97438 * 21 20 18 23 23 H 1.09004 * 116.52745 * 199.60547 * 22 21 20 24 24 C 1.56946 * 100.65360 * 326.22339 * 22 21 20 25 25 H 1.08996 * 109.46887 * 300.00112 * 1 2 3 26 26 H 1.09000 * 109.46845 * 60.00456 * 1 2 3 27 27 H 1.09000 * 109.46696 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47437 * 239.99983 * 2 1 3 29 29 H 1.09001 * 109.47561 * 119.99754 * 2 1 3 30 30 H 0.97001 * 119.99845 * 180.02562 * 7 6 4 31 31 H 1.09006 * 109.47625 * 300.00627 * 14 12 3 32 32 H 1.08999 * 109.47039 * 60.00545 * 14 12 3 33 33 H 1.08999 * 110.39681 * 237.58307 * 17 15 14 34 34 H 1.08995 * 110.39951 * 0.02562 * 17 15 14 35 35 H 1.09004 * 110.40055 * 48.51488 * 20 18 17 36 36 H 1.09001 * 110.40218 * 170.92641 * 20 18 17 37 37 H 1.09000 * 110.39835 * 241.20726 * 21 20 18 38 38 H 1.09000 * 110.40261 * 118.79143 * 21 20 18 39 39 H 1.08995 * 112.02695 * 170.30893 * 24 22 21 40 40 H 1.09002 * 112.02764 * 296.82762 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3443 1.9931 1.1827 5 1 2.1748 3.0524 1.3075 6 6 2.8929 1.2503 2.2210 7 7 3.4967 0.1113 1.9664 8 14 2.7721 1.8710 3.9787 9 1 1.3430 2.0141 4.3561 10 1 3.4312 0.9030 4.8918 11 1 3.4467 3.1897 4.0856 12 6 2.1470 2.0505 -1.1629 13 8 2.5508 3.1942 -1.1628 14 6 1.7891 1.3778 -2.4630 15 6 2.0254 2.3487 -3.6216 16 1 1.5107 3.2916 -3.4371 17 6 3.5392 2.5887 -3.8234 18 6 3.8292 2.0823 -5.2694 19 1 4.8679 1.8508 -5.5049 20 6 3.1372 3.1287 -6.1954 21 6 1.6236 2.8888 -5.9936 22 6 1.5435 1.7196 -4.9651 23 1 0.6025 1.1710 -4.9239 24 6 2.8129 0.8900 -5.3694 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8794 -0.4074 2.6913 31 1 2.4117 0.4932 -2.5979 32 1 0.7397 1.0839 -2.4431 33 1 3.7700 3.6506 -3.7391 34 1 4.1149 2.0146 -3.0975 35 1 3.4053 4.1407 -5.8920 36 1 3.4138 2.9571 -7.2357 37 1 1.1560 2.5992 -6.9347 38 1 1.1475 3.7828 -5.5910 39 1 3.0338 0.1031 -4.6483 40 1 2.7396 0.4991 -6.3843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383551595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = -43.440793 kcal Electronic energy + Delta-G solvation = -19422.305607 eV Core-core repulsion = 16622.400386 eV Total energy + Delta-G solvation = -2799.905222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15662 -38.19985 -34.92549 -32.27314 -31.51516 -29.37995 -29.24795 -27.81293 -26.38738 -24.37174 -22.20943 -21.28399 -19.64541 -18.76730 -18.16817 -16.70434 -15.99066 -15.62942 -15.18814 -14.78264 -14.46011 -13.88208 -13.81874 -12.84615 -12.53458 -12.26965 -12.16213 -12.00912 -11.68677 -11.45844 -11.17025 -11.08853 -11.03064 -10.95079 -10.81155 -10.65553 -10.47836 -10.37562 -10.30375 -10.08094 -9.97437 -9.89178 -9.65083 -8.87293 -8.23460 -7.41077 -6.27059 -3.87654 3.22315 3.27876 3.31925 4.02776 4.20826 4.66795 4.70507 4.73103 5.00660 5.10981 5.38922 5.41567 5.52425 5.59830 5.66539 5.68894 5.77695 5.87044 5.92450 5.98483 6.03551 6.09184 6.13945 6.21667 6.28397 6.32336 6.38147 6.43782 6.45207 6.49538 6.61275 6.70625 6.80728 6.88952 6.96226 7.33095 7.65014 8.32152 8.59739 9.27533 9.51385 10.12727 10.76639 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.036870 B = 0.005631 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.252537 B = 4970.902230 C = 5221.223235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.445 5.445 4 C -0.305 4.305 5 H 0.090 0.910 6 C 0.034 3.966 7 N -0.872 5.872 8 Si 0.916 3.084 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.458 3.542 13 O -0.582 6.582 14 C -0.127 4.127 15 C -0.065 4.065 16 H 0.075 0.925 17 C -0.099 4.099 18 C -0.111 4.111 19 H 0.091 0.909 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.103 4.103 23 H 0.094 0.906 24 C -0.124 4.124 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.112 0.888 30 H 0.267 0.733 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 -1.702 -12.112 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.165 5.165 4 C -0.433 4.433 5 H 0.107 0.893 6 C -0.170 4.170 7 N -0.511 5.511 8 Si 0.743 3.257 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.247 3.753 13 O -0.466 6.466 14 C -0.168 4.168 15 C -0.084 4.084 16 H 0.093 0.907 17 C -0.137 4.137 18 C -0.129 4.129 19 H 0.110 0.890 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.122 4.122 23 H 0.112 0.888 24 C -0.162 4.162 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.339 -1.269 -11.973 12.495 hybrid contribution -0.060 0.047 0.956 0.959 sum -3.400 -1.222 -11.017 11.594 Atomic orbital electron populations 1.22208 0.98416 1.00189 1.01408 1.21566 0.91589 0.85704 1.03982 1.43546 1.56096 1.11823 1.04992 1.19402 1.39582 0.95353 0.88965 0.89250 1.25301 0.94696 0.96567 1.00395 1.69913 1.33029 1.15365 1.32768 0.86167 0.78557 0.78719 0.82279 1.20008 1.21041 1.19829 1.20358 0.82122 0.87914 0.84914 1.90498 1.50274 1.18816 1.86973 1.21725 1.01769 0.99220 0.94058 1.21940 0.96329 0.98169 0.91924 0.90708 1.22519 0.95658 1.01075 0.94438 1.23635 0.97729 0.95171 0.96341 0.89045 1.22603 0.95290 0.99089 0.98706 1.22569 0.96237 0.98374 0.98406 1.23652 0.97508 0.95716 0.95282 0.88829 1.23576 0.95337 0.97022 1.00236 0.92565 0.93936 0.93229 0.93527 0.87014 0.92315 0.90460 0.90824 0.91856 0.91811 0.91929 0.92574 0.92438 0.91858 0.91245 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.15 37.16 0.38 -2.64 16 2 C 0.10 2.12 5.44 -4.04 -0.02 2.09 16 3 N -0.45 -11.43 2.56 -114.81 -0.29 -11.73 16 4 C -0.31 -8.60 8.98 -14.93 -0.13 -8.74 16 5 H 0.09 2.65 7.70 -52.49 -0.40 2.24 16 6 C 0.03 0.90 4.93 -17.47 -0.09 0.82 16 7 N -0.87 -23.76 11.32 55.50 0.63 -23.13 16 8 Si 0.92 20.89 29.61 -169.99 -5.03 15.86 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.46 11.27 7.26 -10.98 -0.08 11.20 16 13 O -0.58 -16.22 15.07 5.55 0.08 -16.13 16 14 C -0.13 -2.38 3.55 -27.89 -0.10 -2.48 16 15 C -0.06 -1.09 1.90 -88.19 -0.17 -1.26 16 16 H 0.07 1.39 7.60 -51.93 -0.39 1.00 16 17 C -0.10 -1.70 4.93 -24.33 -0.12 -1.82 16 18 C -0.11 -1.48 5.19 -85.33 -0.44 -1.93 16 19 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 20 C -0.12 -1.44 6.21 -24.34 -0.15 -1.60 16 21 C -0.12 -1.43 6.21 -24.34 -0.15 -1.58 16 22 C -0.10 -1.37 4.59 -85.33 -0.39 -1.76 16 23 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 24 C -0.12 -1.58 6.34 -22.43 -0.14 -1.72 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 0.73 6.63 -51.93 -0.34 0.38 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.94 6.65 -51.93 -0.35 0.59 16 29 H 0.11 2.73 5.34 -51.93 -0.28 2.45 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.08 1.39 6.61 -51.93 -0.34 1.05 16 32 H 0.07 1.25 6.56 -51.93 -0.34 0.91 16 33 H 0.06 1.14 7.83 -51.93 -0.41 0.73 16 34 H 0.06 1.24 7.54 -51.93 -0.39 0.85 16 35 H 0.06 0.78 7.83 -51.93 -0.41 0.37 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 39 H 0.07 0.92 7.34 -51.93 -0.38 0.54 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -30.26 306.31 -8.15 -38.41 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.54 Total: 3.51 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.61 Total: -11.40 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.33 Total: -34.86 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.08 Total: -16.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.26 -8.15 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383551595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.031 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds