Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47025 * 2 1 4 4 C 1.37097 * 120.00327 * 94.99692 * 3 2 1 5 5 H 1.07994 * 120.00317 * 213.91596 * 4 3 2 6 6 C 1.38950 * 119.99543 * 33.91553 * 4 3 2 7 7 N 1.31411 * 120.00159 * 22.14216 * 6 4 3 8 8 Si 1.86799 * 119.99664 * 202.13945 * 6 4 3 9 9 H 1.48501 * 109.47219 * 60.00069 * 8 6 4 10 10 H 1.48498 * 109.46924 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47419 * 300.00159 * 8 6 4 12 12 C 1.34785 * 119.99673 * 275.00114 * 3 2 1 13 13 O 1.21289 * 119.99549 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00163 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47304 * 180.02562 * 14 12 3 16 16 H 1.08995 * 110.35869 * 307.33249 * 15 14 12 17 17 C 1.54588 * 110.40021 * 69.78072 * 15 14 12 18 18 C 1.55929 * 104.64305 * 118.79288 * 17 15 14 19 19 H 1.08991 * 116.52663 * 199.60277 * 18 17 15 20 20 C 1.55923 * 104.49696 * 70.27436 * 18 17 15 21 21 C 1.54579 * 104.64728 * 289.72383 * 20 18 17 22 22 C 1.55923 * 104.64210 * 359.97438 * 21 20 18 23 23 H 1.09004 * 116.52745 * 199.60547 * 22 21 20 24 24 C 1.56946 * 100.65360 * 326.22339 * 22 21 20 25 25 H 1.08996 * 109.46887 * 300.00112 * 1 2 3 26 26 H 1.09000 * 109.46845 * 60.00456 * 1 2 3 27 27 H 1.09000 * 109.46696 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47437 * 239.99983 * 2 1 3 29 29 H 1.09001 * 109.47561 * 119.99754 * 2 1 3 30 30 H 0.97001 * 119.99845 * 180.02562 * 7 6 4 31 31 H 1.09006 * 109.47625 * 300.00627 * 14 12 3 32 32 H 1.08999 * 109.47039 * 60.00545 * 14 12 3 33 33 H 1.08999 * 110.39681 * 237.58307 * 17 15 14 34 34 H 1.08995 * 110.39951 * 0.02562 * 17 15 14 35 35 H 1.09004 * 110.40055 * 48.51488 * 20 18 17 36 36 H 1.09001 * 110.40218 * 170.92641 * 20 18 17 37 37 H 1.09000 * 110.39835 * 241.20726 * 21 20 18 38 38 H 1.09000 * 110.40261 * 118.79143 * 21 20 18 39 39 H 1.08995 * 112.02695 * 170.30893 * 24 22 21 40 40 H 1.09002 * 112.02764 * 296.82762 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3443 1.9931 1.1827 5 1 2.1748 3.0524 1.3075 6 6 2.8929 1.2503 2.2210 7 7 3.4967 0.1113 1.9664 8 14 2.7721 1.8710 3.9787 9 1 1.3430 2.0141 4.3561 10 1 3.4312 0.9030 4.8918 11 1 3.4467 3.1897 4.0856 12 6 2.1470 2.0505 -1.1629 13 8 2.5508 3.1942 -1.1628 14 6 1.7891 1.3778 -2.4630 15 6 2.0254 2.3487 -3.6216 16 1 1.5107 3.2916 -3.4371 17 6 3.5392 2.5887 -3.8234 18 6 3.8292 2.0823 -5.2694 19 1 4.8679 1.8508 -5.5049 20 6 3.1372 3.1287 -6.1954 21 6 1.6236 2.8888 -5.9936 22 6 1.5435 1.7196 -4.9651 23 1 0.6025 1.1710 -4.9239 24 6 2.8129 0.8900 -5.3694 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8794 -0.4074 2.6913 31 1 2.4117 0.4932 -2.5979 32 1 0.7397 1.0839 -2.4431 33 1 3.7700 3.6506 -3.7391 34 1 4.1149 2.0146 -3.0975 35 1 3.4053 4.1407 -5.8920 36 1 3.4138 2.9571 -7.2357 37 1 1.1560 2.5992 -6.9347 38 1 1.1475 3.7828 -5.5910 39 1 3.0338 0.1031 -4.6483 40 1 2.7396 0.4991 -6.3843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383551595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = -59.970698 kcal Electronic energy + Delta-G solvation = -19423.022398 eV Core-core repulsion = 16622.400386 eV Total energy + Delta-G solvation = -2800.622012 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.42470 -39.98315 -36.88659 -34.13990 -33.07704 -31.14027 -30.38188 -28.92692 -27.92116 -26.18618 -23.90877 -22.59468 -20.80528 -20.32999 -19.49622 -18.69710 -17.70904 -17.04384 -16.77308 -16.22976 -15.91466 -15.63300 -15.42060 -14.51467 -14.20369 -13.86014 -13.61710 -13.37347 -13.18569 -13.09171 -12.84237 -12.67118 -12.41514 -12.19070 -12.13818 -12.08687 -11.99623 -11.81350 -11.71008 -11.58024 -11.34519 -11.15480 -10.92146 -10.78978 -10.19984 -9.43699 -8.33124 -6.02372 1.37607 1.39647 1.50113 2.10979 2.30268 3.02802 3.12307 3.61463 3.64792 3.66187 4.13402 4.22852 4.24697 4.31961 4.39031 4.52340 4.58062 4.58932 4.64458 4.64788 4.75598 4.77419 4.91452 4.98858 5.01600 5.05163 5.14954 5.21901 5.30634 5.31865 5.33879 5.39578 5.45925 5.46981 5.50202 5.59941 5.62464 6.22151 6.57673 7.21880 7.53625 8.14253 8.68706 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.036870 B = 0.005631 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.252537 B = 4970.902230 C = 5221.223235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 N -0.459 5.459 4 C -0.343 4.343 5 H 0.059 0.941 6 C 0.002 3.998 7 N -0.889 5.889 8 Si 0.979 3.021 9 H -0.265 1.265 10 H -0.270 1.270 11 H -0.279 1.279 12 C 0.443 3.557 13 O -0.629 6.629 14 C -0.112 4.112 15 C -0.066 4.066 16 H 0.049 0.951 17 C -0.102 4.102 18 C -0.107 4.107 19 H 0.103 0.897 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.093 4.093 23 H 0.115 0.885 24 C -0.118 4.118 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.273 0.727 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 -3.438 -13.731 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.178 5.178 4 C -0.471 4.471 5 H 0.077 0.923 6 C -0.200 4.200 7 N -0.527 5.527 8 Si 0.803 3.197 9 H -0.190 1.190 10 H -0.194 1.194 11 H -0.205 1.205 12 C 0.233 3.767 13 O -0.516 6.516 14 C -0.152 4.152 15 C -0.085 4.085 16 H 0.067 0.933 17 C -0.140 4.140 18 C -0.125 4.125 19 H 0.121 0.879 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.111 4.111 23 H 0.133 0.867 24 C -0.155 4.155 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.491 -3.043 -13.598 14.640 hybrid contribution 0.360 0.609 1.492 1.651 sum -4.130 -2.433 -12.106 13.021 Atomic orbital electron populations 1.22095 0.95368 1.02446 1.01177 1.21678 0.94073 0.83589 1.03625 1.43856 1.56153 1.13104 1.04693 1.19334 1.41872 0.94689 0.91172 0.92272 1.26035 0.93622 0.96651 1.03702 1.69982 1.32689 1.15967 1.34099 0.85223 0.78971 0.77993 0.77520 1.18956 1.19440 1.20496 1.21403 0.81135 0.87585 0.86584 1.90456 1.52200 1.21016 1.87892 1.21665 1.03153 0.99235 0.91161 1.21944 0.95924 0.97027 0.93645 0.93262 1.22476 0.95793 0.99138 0.96609 1.23664 0.99030 0.96261 0.93581 0.87938 1.22605 0.95302 0.97943 0.99663 1.22586 0.96169 0.97516 0.99180 1.23687 0.98651 0.96221 0.92563 0.86694 1.23576 0.94079 0.96164 1.01691 0.94356 0.92604 0.89628 0.91707 0.89392 0.91709 0.89436 0.88400 0.94307 0.95203 0.93148 0.89994 0.89647 0.92885 0.91911 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 10.15 71.98 0.73 -4.62 16 2 C 0.09 4.10 5.44 86.38 0.47 4.57 16 3 N -0.46 -24.25 2.56 -635.52 -1.62 -25.87 16 4 C -0.34 -20.11 8.98 84.04 0.75 -19.35 16 5 H 0.06 3.74 7.70 -2.91 -0.02 3.72 16 6 C 0.00 0.11 4.93 84.93 0.42 0.52 16 7 N -0.89 -48.87 11.32 21.66 0.25 -48.63 16 8 Si 0.98 43.36 29.61 68.60 2.03 45.39 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.44 22.57 7.26 87.65 0.64 23.20 16 13 O -0.63 -37.24 15.07 -3.06 -0.05 -37.28 16 14 C -0.11 -4.16 3.55 29.85 0.11 -4.06 16 15 C -0.07 -2.24 1.90 -9.22 -0.02 -2.26 16 16 H 0.05 1.90 7.60 -2.39 -0.02 1.88 16 17 C -0.10 -3.62 4.93 32.15 0.16 -3.47 16 18 C -0.11 -2.72 5.19 -7.37 -0.04 -2.76 16 19 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 20 C -0.12 -2.59 6.21 32.14 0.20 -2.39 16 21 C -0.12 -2.49 6.21 32.14 0.20 -2.29 16 22 C -0.09 -2.20 4.59 -7.36 -0.03 -2.23 16 23 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 24 C -0.12 -2.60 6.34 33.38 0.21 -2.39 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.79 6.63 -2.39 -0.02 1.77 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.06 2.54 6.65 -2.38 -0.02 2.52 16 29 H 0.09 4.31 5.34 -2.39 -0.01 4.29 16 30 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.09 3.07 6.61 -2.38 -0.02 3.06 16 32 H 0.10 3.13 6.56 -2.39 -0.02 3.11 16 33 H 0.04 1.50 7.83 -2.39 -0.02 1.48 16 34 H 0.03 1.22 7.54 -2.39 -0.02 1.20 16 35 H 0.05 1.22 7.83 -2.38 -0.02 1.20 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.24 7.84 -2.39 -0.02 1.22 16 39 H 0.06 1.49 7.34 -2.39 -0.02 1.47 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -69.39 306.31 5.41 -63.98 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 1.01 Total: 19.93 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 3.79 Total: -17.52 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -1.38 Total: -74.50 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.05 Total: -37.28 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.39 5.41 -63.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383551595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.009 kcal (2) G-P(sol) polarization free energy of solvation -69.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds