Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47363 * 2 1 4 4 H 1.09004 * 109.47264 * 305.28484 * 3 2 1 5 5 N 1.46904 * 109.47327 * 65.27883 * 3 2 1 6 6 C 1.46898 * 111.00279 * 205.16235 * 5 3 2 7 7 C 1.53003 * 109.46975 * 174.81936 * 6 5 3 8 8 C 1.50699 * 109.47118 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99776 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99871 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00019 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00310 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47052 * 90.00479 * 12 10 8 14 14 H 1.48506 * 109.47141 * 209.99992 * 12 10 8 15 15 H 1.48501 * 109.47263 * 330.00461 * 12 10 8 16 16 C 1.50697 * 109.47433 * 185.28065 * 3 2 1 17 17 C 1.39867 * 126.04130 * 280.02837 * 16 3 2 18 18 N 1.30835 * 108.20624 * 179.97438 * 17 16 3 19 19 N 1.40088 * 108.20429 * 359.97438 * 18 17 16 20 20 C 1.46497 * 126.03796 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47281 * 304.97541 * 20 19 18 22 22 C 1.34953 * 107.92201 * 359.75863 * 19 18 17 23 23 H 1.08997 * 109.47536 * 174.92148 * 1 2 3 24 24 H 1.08998 * 109.47308 * 294.92727 * 1 2 3 25 25 H 1.09006 * 109.46607 * 54.92329 * 1 2 3 26 26 H 1.09003 * 109.47064 * 239.99786 * 2 1 3 27 27 H 1.09000 * 109.46955 * 120.00221 * 2 1 3 28 28 H 1.00905 * 110.99631 * 81.20441 * 5 3 2 29 29 H 1.08999 * 109.47215 * 54.82081 * 6 5 3 30 30 H 1.08997 * 109.46844 * 294.81554 * 6 5 3 31 31 H 1.09004 * 109.46951 * 300.00153 * 7 6 5 32 32 H 1.08997 * 109.47544 * 59.99957 * 7 6 5 33 33 H 0.97001 * 120.00491 * 180.02562 * 11 10 8 34 34 H 1.08003 * 125.89886 * 359.95273 * 17 16 3 35 35 H 1.09000 * 109.46733 * 64.98097 * 20 19 18 36 36 H 1.09005 * 109.47208 * 184.97499 * 20 19 18 37 37 H 1.09000 * 109.47009 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47223 * 300.00066 * 21 20 19 39 39 H 1.09004 * 109.47037 * 60.00407 * 21 20 19 40 40 H 1.08003 * 126.12260 * 180.24387 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6015 1.9829 -0.8389 5 7 1.6573 2.0972 1.2581 6 6 1.5740 3.5541 1.0892 7 6 1.0497 4.1878 2.3794 8 6 0.9636 5.6823 2.2060 9 1 1.2543 6.1349 1.2695 10 6 0.5149 6.4719 3.2433 11 7 0.4403 7.7763 3.0922 12 14 0.0129 5.6892 4.8634 13 1 1.1926 5.6114 5.7621 14 1 -1.0441 6.5123 5.5043 15 1 -0.5089 4.3218 4.6119 16 6 3.5414 1.4444 -0.1308 17 6 4.4576 1.2145 0.9007 18 7 5.6642 1.2975 0.4018 19 7 5.5538 1.5827 -0.9653 20 6 6.6666 1.7585 -1.9017 21 6 7.6107 2.8408 -1.3744 22 6 4.2411 1.6622 -1.2683 23 1 -0.3634 -1.0236 -0.0910 24 1 -0.3634 0.4331 0.9319 25 1 -0.3633 0.5906 -0.8411 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2961 1.8551 2.0007 29 1 0.8955 3.7865 0.2685 30 1 2.5642 3.9511 0.8658 31 1 0.0595 3.7907 2.6029 32 1 1.7281 3.9554 3.2002 33 1 0.1249 8.3319 3.8221 34 1 4.2115 1.0050 1.9313 35 1 7.2101 0.8188 -2.0005 36 1 6.2785 2.0578 -2.8753 37 1 8.4389 2.9713 -2.0710 38 1 7.0671 3.7804 -1.2757 39 1 7.9989 2.5415 -0.4009 40 1 3.8239 1.8661 -2.2434 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390414905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = 60.012785 kcal Electronic energy + Delta-G solvation = -18358.831038 eV Core-core repulsion = 15595.704652 eV Total energy + Delta-G solvation = -2763.126387 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.23387 -37.05662 -34.39002 -33.56090 -32.03729 -30.44842 -29.93760 -28.65685 -25.36613 -23.84313 -23.36961 -21.47659 -20.84761 -20.11868 -19.50566 -17.13485 -16.69791 -15.54360 -15.07327 -14.81432 -14.38044 -14.19718 -13.96067 -13.87825 -13.16024 -12.99144 -12.71754 -12.59326 -12.46924 -12.28312 -11.91925 -11.62544 -11.54214 -11.27322 -10.99947 -10.88106 -10.66763 -10.33539 -9.98282 -9.81386 -9.63835 -9.38120 -9.16360 -8.48055 -8.29089 -7.84103 -5.99039 -3.96697 1.92731 2.49433 2.87850 3.36912 3.43950 3.50602 4.32324 4.51758 4.70478 4.73478 4.83849 4.93010 4.96663 5.23073 5.35968 5.38158 5.42036 5.48908 5.54159 5.64290 5.76273 5.91766 5.99339 6.10621 6.14853 6.19165 6.30441 6.44593 6.46346 6.66913 6.70834 6.88647 7.02620 7.24689 7.48066 7.69528 7.76148 7.86114 8.01361 8.59668 9.05542 9.63960 11.14500 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.005343 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.595279 B = 5239.090779 C = 6240.438406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C 0.162 3.838 4 H 0.077 0.923 5 N -0.679 5.679 6 C 0.077 3.923 7 C -0.009 4.009 8 C -0.518 4.518 9 H 0.069 0.931 10 C 0.066 3.934 11 N -0.906 5.906 12 Si 0.881 3.119 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.262 1.262 16 C -0.254 4.254 17 C 0.055 3.945 18 N -0.295 5.295 19 N -0.376 5.376 20 C 0.132 3.868 21 C -0.166 4.166 22 C 0.055 3.945 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.334 0.666 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.025 0.975 32 H 0.008 0.992 33 H 0.262 0.738 34 H 0.179 0.821 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.205 -15.906 -10.619 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 C 0.050 3.950 4 H 0.095 0.905 5 N -0.308 5.308 6 C -0.051 4.051 7 C -0.046 4.046 8 C -0.557 4.557 9 H 0.087 0.913 10 C -0.135 4.135 11 N -0.546 5.546 12 Si 0.708 3.292 13 H -0.205 1.205 14 H -0.215 1.215 15 H -0.187 1.187 16 C -0.267 4.267 17 C -0.132 4.132 18 N -0.116 5.116 19 N -0.159 5.159 20 C 0.011 3.989 21 C -0.224 4.224 22 C -0.091 4.091 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.196 0.804 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.843 -15.876 -10.491 21.424 hybrid contribution -0.076 0.184 0.585 0.618 sum 9.768 -15.692 -9.905 20.971 Atomic orbital electron populations 1.21661 0.95440 1.00044 1.02893 1.21450 0.96145 0.95362 1.00990 1.19971 0.86030 0.95125 0.93861 0.90475 1.60803 1.54183 1.10464 1.05394 1.21918 0.98585 0.84304 1.00322 1.19527 0.96412 0.95983 0.92725 1.21092 1.43709 0.89753 1.01138 0.91283 1.25006 0.95068 0.94659 0.98727 1.69923 1.47814 1.04031 1.32807 0.86750 0.78514 0.79995 0.83894 1.20455 1.21532 1.18657 1.21094 0.98462 1.14348 0.92815 1.23660 0.89673 0.99772 1.00072 1.77271 1.22467 1.22964 0.88944 1.48661 1.05044 1.55072 1.07127 1.21625 0.86580 1.00424 0.90246 1.22057 0.99102 0.98551 1.02690 1.22338 0.84009 1.02518 1.00255 0.94025 0.91222 0.93386 0.92816 0.92259 0.84863 0.92024 0.96168 0.95716 0.97409 0.92821 0.80388 0.90133 0.88879 0.90879 0.91861 0.91108 0.81331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.74 37.16 0.36 -1.38 16 2 C -0.10 -1.22 5.59 -26.73 -0.15 -1.37 16 3 C 0.16 2.24 2.43 -68.87 -0.17 2.07 16 4 H 0.08 1.09 7.71 -51.93 -0.40 0.69 16 5 N -0.68 -11.25 5.78 -107.95 -0.62 -11.87 16 6 C 0.08 1.58 5.45 -3.82 -0.02 1.55 16 7 C -0.01 -0.21 4.34 -27.88 -0.12 -0.33 16 8 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 9 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 10 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 11 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 12 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 16 C -0.25 -3.47 4.92 -105.06 -0.52 -3.99 16 17 C 0.05 0.78 11.15 -17.37 -0.19 0.59 16 18 N -0.30 -4.39 12.42 30.62 0.38 -4.01 16 19 N -0.38 -4.68 3.68 -61.37 -0.23 -4.91 16 20 C 0.13 1.12 7.23 -4.05 -0.03 1.10 16 21 C -0.17 -1.44 10.10 37.15 0.38 -1.07 16 22 C 0.06 0.67 11.36 -17.22 -0.20 0.48 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.33 5.32 7.21 -39.29 -0.28 5.03 16 29 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 30 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 32 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.18 2.24 7.42 -52.48 -0.39 1.85 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -33.11 330.08 -7.37 -40.48 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.89 Total: 1.39 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -1.09 Total: -15.92 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.30 Total: -48.51 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.11 -7.37 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390414905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.489 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds