Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47363 * 2 1 4 4 H 1.09004 * 109.47264 * 305.28484 * 3 2 1 5 5 N 1.46904 * 109.47327 * 65.27883 * 3 2 1 6 6 C 1.46898 * 111.00279 * 205.16235 * 5 3 2 7 7 C 1.53003 * 109.46975 * 174.81936 * 6 5 3 8 8 C 1.50699 * 109.47118 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99776 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99871 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00019 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00310 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47052 * 90.00479 * 12 10 8 14 14 H 1.48506 * 109.47141 * 209.99992 * 12 10 8 15 15 H 1.48501 * 109.47263 * 330.00461 * 12 10 8 16 16 C 1.50697 * 109.47433 * 185.28065 * 3 2 1 17 17 C 1.39867 * 126.04130 * 280.02837 * 16 3 2 18 18 N 1.30835 * 108.20624 * 179.97438 * 17 16 3 19 19 N 1.40088 * 108.20429 * 359.97438 * 18 17 16 20 20 C 1.46497 * 126.03796 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47281 * 304.97541 * 20 19 18 22 22 C 1.34953 * 107.92201 * 359.75863 * 19 18 17 23 23 H 1.08997 * 109.47536 * 174.92148 * 1 2 3 24 24 H 1.08998 * 109.47308 * 294.92727 * 1 2 3 25 25 H 1.09006 * 109.46607 * 54.92329 * 1 2 3 26 26 H 1.09003 * 109.47064 * 239.99786 * 2 1 3 27 27 H 1.09000 * 109.46955 * 120.00221 * 2 1 3 28 28 H 1.00905 * 110.99631 * 81.20441 * 5 3 2 29 29 H 1.08999 * 109.47215 * 54.82081 * 6 5 3 30 30 H 1.08997 * 109.46844 * 294.81554 * 6 5 3 31 31 H 1.09004 * 109.46951 * 300.00153 * 7 6 5 32 32 H 1.08997 * 109.47544 * 59.99957 * 7 6 5 33 33 H 0.97001 * 120.00491 * 180.02562 * 11 10 8 34 34 H 1.08003 * 125.89886 * 359.95273 * 17 16 3 35 35 H 1.09000 * 109.46733 * 64.98097 * 20 19 18 36 36 H 1.09005 * 109.47208 * 184.97499 * 20 19 18 37 37 H 1.09000 * 109.47009 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47223 * 300.00066 * 21 20 19 39 39 H 1.09004 * 109.47037 * 60.00407 * 21 20 19 40 40 H 1.08003 * 126.12260 * 180.24387 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6015 1.9829 -0.8389 5 7 1.6573 2.0972 1.2581 6 6 1.5740 3.5541 1.0892 7 6 1.0497 4.1878 2.3794 8 6 0.9636 5.6823 2.2060 9 1 1.2543 6.1349 1.2695 10 6 0.5149 6.4719 3.2433 11 7 0.4403 7.7763 3.0922 12 14 0.0129 5.6892 4.8634 13 1 1.1926 5.6114 5.7621 14 1 -1.0441 6.5123 5.5043 15 1 -0.5089 4.3218 4.6119 16 6 3.5414 1.4444 -0.1308 17 6 4.4576 1.2145 0.9007 18 7 5.6642 1.2975 0.4018 19 7 5.5538 1.5827 -0.9653 20 6 6.6666 1.7585 -1.9017 21 6 7.6107 2.8408 -1.3744 22 6 4.2411 1.6622 -1.2683 23 1 -0.3634 -1.0236 -0.0910 24 1 -0.3634 0.4331 0.9319 25 1 -0.3633 0.5906 -0.8411 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2961 1.8551 2.0007 29 1 0.8955 3.7865 0.2685 30 1 2.5642 3.9511 0.8658 31 1 0.0595 3.7907 2.6029 32 1 1.7281 3.9554 3.2002 33 1 0.1249 8.3319 3.8221 34 1 4.2115 1.0050 1.9313 35 1 7.2101 0.8188 -2.0005 36 1 6.2785 2.0578 -2.8753 37 1 8.4389 2.9713 -2.0710 38 1 7.0671 3.7804 -1.2757 39 1 7.9989 2.5415 -0.4009 40 1 3.8239 1.8661 -2.2434 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390414905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = 38.128019 kcal Electronic energy + Delta-G solvation = -18359.780033 eV Core-core repulsion = 15595.704652 eV Total energy + Delta-G solvation = -2764.075382 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.21319 -38.29977 -35.63958 -34.99550 -33.80292 -31.48346 -31.22370 -30.00644 -26.74753 -24.99427 -24.67622 -22.60232 -22.07226 -21.57240 -20.56043 -18.92907 -18.06721 -16.42506 -16.35233 -16.31673 -15.85321 -15.33343 -15.17739 -15.01440 -14.63838 -14.42518 -14.12853 -13.75719 -13.46917 -13.38842 -13.05786 -12.98958 -12.84048 -12.46672 -12.28256 -12.16014 -11.85008 -11.76464 -11.64109 -11.39573 -11.36210 -11.32901 -10.75063 -10.36070 -9.34962 -9.17625 -8.28500 -6.32481 0.96462 1.37976 1.40089 1.53823 1.66735 1.83986 2.38600 3.07561 3.42231 3.54736 3.97819 4.04646 4.08859 4.26343 4.36479 4.37628 4.43545 4.55585 4.62610 4.67549 4.69716 4.77201 4.91607 5.00237 5.04234 5.08020 5.19071 5.20670 5.26514 5.32876 5.47353 5.56402 5.66557 5.69540 5.69898 6.15641 6.25643 6.32925 6.62080 6.74645 6.77442 7.32460 8.88417 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.005343 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.595279 B = 5239.090779 C = 6240.438406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C 0.167 3.833 4 H 0.074 0.926 5 N -0.675 5.675 6 C 0.096 3.904 7 C -0.003 4.003 8 C -0.531 4.531 9 H 0.029 0.971 10 C 0.005 3.995 11 N -0.953 5.953 12 Si 0.954 3.046 13 H -0.269 1.269 14 H -0.284 1.284 15 H -0.245 1.245 16 C -0.273 4.273 17 C 0.041 3.959 18 N -0.328 5.328 19 N -0.376 5.376 20 C 0.123 3.877 21 C -0.162 4.162 22 C 0.059 3.941 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.338 0.662 29 H 0.055 0.945 30 H 0.004 0.996 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.266 0.734 34 H 0.185 0.815 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.048 0.952 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.327 -17.975 -11.057 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C 0.056 3.944 4 H 0.093 0.907 5 N -0.305 5.305 6 C -0.033 4.033 7 C -0.040 4.040 8 C -0.570 4.570 9 H 0.047 0.953 10 C -0.192 4.192 11 N -0.594 5.594 12 Si 0.777 3.223 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.168 1.168 16 C -0.286 4.286 17 C -0.145 4.145 18 N -0.149 5.149 19 N -0.159 5.159 20 C 0.003 3.997 21 C -0.219 4.219 22 C -0.088 4.088 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.202 0.798 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.120 0.880 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.989 -17.971 -10.943 23.292 hybrid contribution -0.040 0.869 0.587 1.049 sum 9.950 -17.102 -10.357 22.332 Atomic orbital electron populations 1.21634 0.95482 1.00948 1.01751 1.21389 0.95934 0.93995 1.01791 1.19970 0.86459 0.95841 0.92157 0.90746 1.60732 1.54875 1.07713 1.07138 1.21518 0.97182 0.86655 0.97957 1.19417 0.96670 0.93057 0.94899 1.21431 1.43377 0.92465 0.99726 0.95284 1.25998 0.95002 0.95083 1.03070 1.70073 1.49125 1.05820 1.34380 0.85607 0.78508 0.79660 0.78552 1.19372 1.20937 1.16829 1.21091 0.98192 1.15912 0.93421 1.23872 0.89853 1.00006 1.00741 1.77207 1.22979 1.24160 0.90602 1.49010 1.06130 1.53983 1.06741 1.22024 0.85910 1.01081 0.90663 1.22021 0.99884 0.97612 1.02424 1.22851 0.83909 1.00828 1.01195 0.92324 0.93216 0.93445 0.91137 0.92270 0.84326 0.92656 0.97779 0.95675 0.96816 0.92509 0.79789 0.88676 0.85683 0.87951 0.93762 0.93293 0.78179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.74 71.98 0.70 -2.43 16 2 C -0.09 -2.03 5.59 30.59 0.17 -1.86 16 3 C 0.17 4.36 2.43 44.16 0.11 4.47 16 4 H 0.07 1.99 7.71 -2.39 -0.02 1.97 16 5 N -0.67 -21.67 5.78 -495.46 -2.86 -24.53 16 6 C 0.10 3.93 5.45 86.30 0.47 4.40 16 7 C 0.00 -0.13 4.34 29.85 0.13 0.00 16 8 C -0.53 -31.67 9.66 25.60 0.25 -31.42 16 9 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 10 C 0.00 0.30 5.47 84.65 0.46 0.76 16 11 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 12 Si 0.95 45.63 27.47 68.60 1.88 47.51 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.24 -10.96 6.54 99.48 0.65 -10.31 16 16 C -0.27 -7.09 4.92 -20.15 -0.10 -7.19 16 17 C 0.04 1.14 11.15 85.24 0.95 2.09 16 18 N -0.33 -9.55 12.42 -57.02 -0.71 -10.26 16 19 N -0.38 -8.75 3.68 -348.07 -1.28 -10.03 16 20 C 0.12 1.80 7.23 86.38 0.62 2.42 16 21 C -0.16 -2.61 10.10 71.98 0.73 -1.88 16 22 C 0.06 1.33 11.36 83.54 0.95 2.28 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.05 1.30 7.90 -2.39 -0.02 1.29 16 25 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.34 10.43 7.21 -89.69 -0.65 9.78 16 29 H 0.05 2.31 7.93 -2.39 -0.02 2.29 16 30 H 0.00 0.17 8.09 -2.39 -0.02 0.15 16 31 H 0.02 1.22 7.20 -2.38 -0.02 1.20 16 32 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 33 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.19 4.59 7.42 -2.91 -0.02 4.57 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.13 1.04 8.07 -2.38 -0.02 1.02 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -72.59 330.08 3.07 -69.52 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.29 Total: 17.02 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 5.44 Total: -28.36 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -4.55 Total: -105.69 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -72.59 3.07 -69.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390414905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.649 kcal (2) G-P(sol) polarization free energy of solvation -72.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds