Wall clock time and date at job start Mon Mar 30 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.55474 * 2 1 4 4 C 1.53002 * 117.50315 * 145.67338 * 2 1 3 5 5 C 1.53000 * 59.99990 * 107.48701 * 4 2 1 6 6 H 1.08997 * 117.49478 * 107.49190 * 5 4 2 7 7 C 1.50703 * 117.50052 * 252.50816 * 5 4 2 8 8 O 1.21283 * 119.99495 * 68.62999 * 7 5 4 9 9 N 1.34770 * 120.00282 * 248.62247 * 7 5 4 10 10 C 1.46933 * 120.62904 * 359.72623 * 9 7 5 11 11 C 1.52760 * 109.00613 * 233.57843 * 10 9 7 12 12 C 1.53039 * 109.38813 * 305.58941 * 11 10 9 13 13 C 1.52995 * 109.46298 * 181.25875 * 12 11 10 14 14 C 1.50705 * 109.47031 * 64.93491 * 13 12 11 15 15 H 1.07994 * 119.99762 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99733 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00110 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99808 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46794 * 89.99982 * 18 16 14 20 20 H 1.48491 * 109.47238 * 210.00246 * 18 16 14 21 21 H 1.48501 * 109.47234 * 330.00553 * 18 16 14 22 22 C 1.53042 * 109.53819 * 61.23886 * 12 11 10 23 23 C 1.46921 * 120.63483 * 180.02562 * 9 7 5 24 24 H 1.09002 * 109.47153 * 325.71821 * 1 2 3 25 25 H 1.09001 * 109.46832 * 205.72012 * 1 2 3 26 26 H 1.09004 * 109.47261 * 85.71993 * 1 2 3 27 27 H 1.08999 * 117.50085 * 214.98118 * 4 2 1 28 28 H 1.09003 * 117.49216 * 0.02562 * 4 2 1 29 29 H 1.08996 * 109.58510 * 353.41227 * 10 9 7 30 30 H 1.08998 * 109.58438 * 113.84380 * 10 9 7 31 31 H 1.09001 * 109.56432 * 185.54856 * 11 10 9 32 32 H 1.09006 * 109.38490 * 65.51485 * 11 10 9 33 33 H 1.09005 * 109.45838 * 301.22248 * 12 11 10 34 34 H 1.09007 * 109.47047 * 184.92976 * 13 12 11 35 35 H 1.08998 * 109.47326 * 304.93177 * 13 12 11 36 36 H 0.97001 * 119.99544 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.50316 * 178.69038 * 22 12 11 38 38 H 1.08994 * 109.49922 * 58.58735 * 22 12 11 39 39 H 1.08995 * 109.59112 * 246.16332 * 23 9 7 40 40 H 1.09010 * 109.58381 * 6.58045 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 2.2364 -1.1212 -0.7647 6 1 3.1715 -0.8755 -1.2681 7 6 1.3720 -2.1411 -1.4602 8 8 0.1638 -2.0536 -1.4006 9 7 1.9415 -3.1502 -2.1485 10 6 3.4037 -3.2658 -2.2349 11 6 3.8095 -3.3583 -3.7047 12 6 3.0474 -4.5061 -4.3709 13 6 3.4758 -4.6203 -5.8352 14 6 4.9295 -5.0118 -5.9042 15 1 5.4916 -5.1635 -4.9947 16 6 5.5417 -5.1763 -7.1286 17 7 4.8569 -4.9920 -8.2362 18 14 7.3437 -5.6609 -7.2143 19 1 7.4575 -7.1413 -7.2371 20 1 7.9494 -5.0987 -8.4480 21 1 8.0566 -5.1280 -6.0256 22 6 1.5435 -4.2314 -4.2996 23 6 1.1121 -4.1518 -2.8322 24 1 -0.3633 0.8491 0.5789 25 1 -0.3633 -0.9259 0.4460 26 1 -0.3634 0.0767 -1.0248 27 1 3.1716 -0.8748 1.2685 28 1 1.6112 -1.8583 1.2684 29 1 3.8669 -2.3883 -1.7838 30 1 3.7307 -4.1641 -1.7112 31 1 4.8813 -3.5431 -3.7765 32 1 3.5675 -2.4213 -4.2065 33 1 3.2711 -5.4391 -3.8534 34 1 2.8712 -5.3789 -6.3325 35 1 3.3341 -3.6601 -6.3312 36 1 5.2878 -5.1073 -9.0976 37 1 1.0025 -5.0377 -4.7947 38 1 1.3225 -3.2863 -4.7953 39 1 1.2480 -5.1239 -2.3584 40 1 0.0637 -3.8586 -2.7751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399278098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:18 Heat of formation + Delta-G solvation = -31.003572 kcal Electronic energy + Delta-G solvation = -18812.638709 eV Core-core repulsion = 16013.272806 eV Total energy + Delta-G solvation = -2799.365903 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31806 -37.96404 -36.26811 -33.99902 -32.16217 -30.85002 -28.77565 -27.91513 -25.22906 -23.71485 -22.74071 -21.58941 -20.90492 -19.56107 -18.35702 -17.29625 -16.29867 -15.59183 -15.42957 -14.62280 -14.54801 -13.89289 -13.71750 -13.40610 -13.19826 -12.79933 -12.71839 -12.56247 -12.37070 -12.05408 -11.80468 -11.57371 -11.19183 -10.99228 -10.80627 -10.70559 -10.47598 -10.33970 -10.17925 -10.03281 -9.68315 -9.37612 -9.25084 -8.98257 -8.37387 -8.31547 -6.01509 -4.03725 2.59888 3.14651 3.29517 3.36425 3.38248 3.72470 4.43535 4.47271 4.58909 4.75013 4.96035 5.20888 5.26352 5.33629 5.38411 5.47949 5.52313 5.56975 5.70053 5.72604 5.79896 5.80627 5.92147 6.00063 6.05255 6.08718 6.37211 6.39672 6.46316 6.52450 6.70041 6.95965 6.98624 7.09849 7.61492 7.65397 7.80072 7.98197 8.35033 8.40421 9.02825 9.60189 11.09762 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.039011 B = 0.004482 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.577442 B = 6245.065801 C = 6627.707314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.152 4.152 5 C -0.192 4.192 6 H 0.125 0.875 7 C 0.543 3.457 8 O -0.547 6.547 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.121 4.121 12 C -0.081 4.081 13 C 0.027 3.973 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.129 4.129 23 C 0.112 3.888 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 6.820 15.725 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 H 0.127 0.873 4 C -0.189 4.189 5 C -0.213 4.213 6 H 0.142 0.858 7 C 0.331 3.669 8 O -0.426 6.426 9 N -0.334 5.334 10 C -0.019 4.019 11 C -0.159 4.159 12 C -0.099 4.099 13 C -0.010 4.010 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.168 4.168 23 C -0.010 4.010 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.989 6.843 15.553 17.709 hybrid contribution 1.323 -0.379 -0.392 1.431 sum -3.666 6.464 15.161 16.884 Atomic orbital electron populations 1.21346 0.91573 1.01163 1.02603 1.22362 0.96573 0.93511 1.01548 0.87291 1.23052 1.02941 1.01900 0.91010 1.22340 1.02247 1.01108 0.95640 0.85755 1.19608 0.87822 0.80994 0.78454 1.90655 1.14569 1.74975 1.62417 1.48127 1.07662 1.26856 1.50730 1.21872 0.79004 1.01862 0.99118 1.21842 1.01886 0.99688 0.92444 1.21188 0.91664 0.96727 1.00344 1.19128 0.95987 0.97102 0.88757 1.21236 0.95856 1.46407 0.92005 0.92602 1.25023 0.97894 0.95609 0.95926 1.69966 1.36275 1.49797 0.97421 0.86643 0.85472 0.78689 0.77476 1.20736 1.21303 1.19904 1.22019 0.98393 1.02082 0.94259 1.21652 0.95554 0.90671 0.93105 0.93532 0.91834 0.91352 0.87978 0.88404 0.90316 0.91612 0.89673 0.92338 0.92365 0.96599 0.96645 0.93037 0.91153 0.92116 0.91909 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 8.43 37.16 0.31 -0.96 16 2 C -0.12 -1.27 6.41 -90.62 -0.58 -1.85 16 3 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.15 -1.45 9.88 -26.73 -0.26 -1.72 16 5 C -0.19 -2.24 5.13 -91.77 -0.47 -2.71 16 6 H 0.12 1.30 6.55 -51.93 -0.34 0.96 16 7 C 0.54 8.13 7.46 -10.99 -0.08 8.05 16 8 O -0.55 -9.49 12.52 5.55 0.07 -9.42 16 9 N -0.60 -8.95 2.98 -173.05 -0.52 -9.46 16 10 C 0.10 1.42 6.32 -3.93 -0.02 1.40 16 11 C -0.12 -2.07 5.17 -26.83 -0.14 -2.20 16 12 C -0.08 -1.56 2.10 -90.58 -0.19 -1.75 16 13 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 14 C -0.52 -13.94 8.39 -34.44 -0.29 -14.23 16 15 H 0.06 1.44 7.05 -52.49 -0.37 1.07 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.13 -2.21 5.36 -26.63 -0.14 -2.35 16 23 C 0.11 1.71 6.43 -3.73 -0.02 1.69 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.82 7.02 -51.93 -0.36 0.45 16 26 H 0.07 0.92 7.26 -51.93 -0.38 0.54 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 0.99 8.05 -51.93 -0.42 0.58 16 29 H 0.08 0.90 5.51 -51.93 -0.29 0.62 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.54 6.91 -51.93 -0.36 1.18 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.32 7.01 -51.92 -0.36 0.96 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -30.40 313.85 -8.78 -39.18 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.66 Total: -0.75 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -2.12 Total: -14.60 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.22 Total: -35.26 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.40 -8.78 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399278098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.181 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds