Wall clock time and date at job start Mon Mar 30 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.55474 * 2 1 4 4 C 1.53002 * 117.50315 * 145.67338 * 2 1 3 5 5 C 1.53000 * 59.99990 * 107.48701 * 4 2 1 6 6 H 1.08997 * 117.49478 * 107.49190 * 5 4 2 7 7 C 1.50703 * 117.50052 * 252.50816 * 5 4 2 8 8 O 1.21283 * 119.99495 * 68.62999 * 7 5 4 9 9 N 1.34770 * 120.00282 * 248.62247 * 7 5 4 10 10 C 1.46933 * 120.62904 * 359.72623 * 9 7 5 11 11 C 1.52760 * 109.00613 * 233.57843 * 10 9 7 12 12 C 1.53039 * 109.38813 * 305.58941 * 11 10 9 13 13 C 1.52995 * 109.46298 * 181.25875 * 12 11 10 14 14 C 1.50705 * 109.47031 * 64.93491 * 13 12 11 15 15 H 1.07994 * 119.99762 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99733 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00110 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99808 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46794 * 89.99982 * 18 16 14 20 20 H 1.48491 * 109.47238 * 210.00246 * 18 16 14 21 21 H 1.48501 * 109.47234 * 330.00553 * 18 16 14 22 22 C 1.53042 * 109.53819 * 61.23886 * 12 11 10 23 23 C 1.46921 * 120.63483 * 180.02562 * 9 7 5 24 24 H 1.09002 * 109.47153 * 325.71821 * 1 2 3 25 25 H 1.09001 * 109.46832 * 205.72012 * 1 2 3 26 26 H 1.09004 * 109.47261 * 85.71993 * 1 2 3 27 27 H 1.08999 * 117.50085 * 214.98118 * 4 2 1 28 28 H 1.09003 * 117.49216 * 0.02562 * 4 2 1 29 29 H 1.08996 * 109.58510 * 353.41227 * 10 9 7 30 30 H 1.08998 * 109.58438 * 113.84380 * 10 9 7 31 31 H 1.09001 * 109.56432 * 185.54856 * 11 10 9 32 32 H 1.09006 * 109.38490 * 65.51485 * 11 10 9 33 33 H 1.09005 * 109.45838 * 301.22248 * 12 11 10 34 34 H 1.09007 * 109.47047 * 184.92976 * 13 12 11 35 35 H 1.08998 * 109.47326 * 304.93177 * 13 12 11 36 36 H 0.97001 * 119.99544 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.50316 * 178.69038 * 22 12 11 38 38 H 1.08994 * 109.49922 * 58.58735 * 22 12 11 39 39 H 1.08995 * 109.59112 * 246.16332 * 23 9 7 40 40 H 1.09010 * 109.58381 * 6.58045 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 2.2364 -1.1212 -0.7647 6 1 3.1715 -0.8755 -1.2681 7 6 1.3720 -2.1411 -1.4602 8 8 0.1638 -2.0536 -1.4006 9 7 1.9415 -3.1502 -2.1485 10 6 3.4037 -3.2658 -2.2349 11 6 3.8095 -3.3583 -3.7047 12 6 3.0474 -4.5061 -4.3709 13 6 3.4758 -4.6203 -5.8352 14 6 4.9295 -5.0118 -5.9042 15 1 5.4916 -5.1635 -4.9947 16 6 5.5417 -5.1763 -7.1286 17 7 4.8569 -4.9920 -8.2362 18 14 7.3437 -5.6609 -7.2143 19 1 7.4575 -7.1413 -7.2371 20 1 7.9494 -5.0987 -8.4480 21 1 8.0566 -5.1280 -6.0256 22 6 1.5435 -4.2314 -4.2996 23 6 1.1121 -4.1518 -2.8322 24 1 -0.3633 0.8491 0.5789 25 1 -0.3633 -0.9259 0.4460 26 1 -0.3634 0.0767 -1.0248 27 1 3.1716 -0.8748 1.2685 28 1 1.6112 -1.8583 1.2684 29 1 3.8669 -2.3883 -1.7838 30 1 3.7307 -4.1641 -1.7112 31 1 4.8813 -3.5431 -3.7765 32 1 3.5675 -2.4213 -4.2065 33 1 3.2711 -5.4391 -3.8534 34 1 2.8712 -5.3789 -6.3325 35 1 3.3341 -3.6601 -6.3312 36 1 5.2878 -5.1073 -9.0976 37 1 1.0025 -5.0377 -4.7947 38 1 1.3225 -3.2863 -4.7953 39 1 1.2480 -5.1239 -2.3584 40 1 0.0637 -3.8586 -2.7751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399278098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:18 Heat of formation + Delta-G solvation = -47.600085 kcal Electronic energy + Delta-G solvation = -18813.358388 eV Core-core repulsion = 16013.272806 eV Total energy + Delta-G solvation = -2800.085582 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.44189 -39.19739 -37.33368 -35.68222 -33.99638 -32.16290 -30.07240 -29.28907 -26.72049 -25.08796 -24.07446 -22.97767 -21.87581 -20.98271 -19.54203 -18.45803 -18.30957 -16.73117 -16.55657 -16.39803 -15.72939 -15.30106 -14.99688 -14.70367 -14.54834 -14.24391 -13.96776 -13.84858 -13.52880 -13.36160 -13.08665 -12.96286 -12.72640 -12.50553 -12.33750 -12.29420 -12.12705 -11.75838 -11.36855 -11.17104 -11.14133 -10.85857 -10.83099 -10.52094 -10.47878 -9.57660 -8.15868 -6.25794 1.42675 1.43281 1.52451 1.54020 2.03891 2.43523 2.87435 3.18030 3.50635 3.72523 3.92833 3.96128 4.04292 4.11174 4.18168 4.22467 4.41445 4.50499 4.58149 4.67798 4.77576 4.85629 4.88522 4.91317 4.97624 4.99629 5.07591 5.10743 5.20878 5.30954 5.32606 5.40595 5.53430 5.56095 5.62777 5.81559 5.89391 6.28892 6.47996 6.91145 7.21090 7.43281 8.96256 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.039011 B = 0.004482 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.577442 B = 6245.065801 C = 6627.707314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.125 4.125 3 H 0.134 0.866 4 C -0.131 4.131 5 C -0.207 4.207 6 H 0.142 0.858 7 C 0.535 3.465 8 O -0.579 6.579 9 N -0.606 5.606 10 C 0.113 3.887 11 C -0.115 4.115 12 C -0.073 4.073 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.069 0.931 16 C -0.004 4.004 17 N -0.939 5.939 18 Si 0.961 3.039 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.257 1.257 22 C -0.122 4.122 23 C 0.119 3.881 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.063 0.937 34 H -0.016 1.016 35 H -0.017 1.017 36 H 0.261 0.739 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 7.288 18.300 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 H 0.152 0.848 4 C -0.168 4.168 5 C -0.228 4.228 6 H 0.160 0.840 7 C 0.325 3.675 8 O -0.459 6.459 9 N -0.338 5.338 10 C -0.009 4.009 11 C -0.153 4.153 12 C -0.092 4.092 13 C -0.005 4.005 14 C -0.564 4.564 15 H 0.087 0.913 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.786 3.214 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.181 1.181 22 C -0.160 4.160 23 C -0.004 4.004 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.151 0.849 28 H 0.108 0.892 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.003 0.997 35 H 0.002 0.998 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.112 7.311 18.153 19.816 hybrid contribution 0.655 -0.518 -1.236 1.492 sum -2.457 6.793 16.917 18.394 Atomic orbital electron populations 1.21268 0.92989 1.01085 1.01103 1.22508 0.95615 0.94721 1.01467 0.84829 1.23159 1.03771 1.00593 0.89277 1.22385 1.02500 1.00917 0.96976 0.84049 1.20275 0.87907 0.81167 0.78144 1.90648 1.16150 1.75638 1.63508 1.48237 1.08113 1.26815 1.50640 1.21878 0.78331 1.04201 0.96466 1.21730 1.00985 0.97757 0.94832 1.21041 0.93329 0.98163 0.96672 1.19027 0.95214 0.94191 0.92083 1.21670 0.96764 1.45523 0.92489 0.91319 1.25985 1.02854 0.95663 0.95589 1.70120 1.38453 1.51305 0.98082 0.85499 0.79603 0.78415 0.77857 1.20130 1.21397 1.18100 1.21899 0.96958 1.01172 0.95953 1.21518 0.95394 0.91828 0.91613 0.91489 0.93659 0.93916 0.84893 0.89243 0.87253 0.89951 0.90410 0.93749 0.91851 0.99717 0.99818 0.93069 0.91158 0.93788 0.90216 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 8.43 71.98 0.61 -1.77 16 2 C -0.12 -2.25 6.41 -10.79 -0.07 -2.32 16 3 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.13 -2.03 9.88 30.59 0.30 -1.73 16 5 C -0.21 -4.23 5.13 -11.54 -0.06 -4.29 16 6 H 0.14 2.39 6.55 -2.39 -0.02 2.37 16 7 C 0.53 15.28 7.46 87.66 0.65 15.94 16 8 O -0.58 -20.02 12.52 -3.04 -0.04 -20.06 16 9 N -0.61 -17.05 2.98 -819.81 -2.44 -19.49 16 10 C 0.11 2.79 6.32 86.22 0.54 3.33 16 11 C -0.11 -3.82 5.17 30.53 0.16 -3.66 16 12 C -0.07 -2.85 2.10 -10.77 -0.02 -2.87 16 13 C 0.03 1.64 4.45 29.85 0.13 1.78 16 14 C -0.53 -28.60 8.39 25.60 0.21 -28.38 16 15 H 0.07 3.48 7.05 -2.91 -0.02 3.46 16 16 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 17 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 18 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 C -0.12 -4.21 5.36 30.66 0.16 -4.05 16 23 C 0.12 3.53 6.43 86.35 0.56 4.09 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.04 1.15 7.02 -2.39 -0.02 1.13 16 26 H 0.04 1.15 7.26 -2.38 -0.02 1.13 16 27 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 29 H 0.11 2.07 5.51 -2.39 -0.01 2.06 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.70 6.91 -2.39 -0.02 2.69 16 32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 34 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 35 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 2.46 7.01 -2.38 -0.02 2.44 16 Total: -1.00 -67.73 313.85 4.48 -63.25 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.00 Total: 11.58 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.64 Total: -23.69 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -2.16 Total: -76.30 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.04 Total: -20.06 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.73 4.48 -63.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399278098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.650 kcal (2) G-P(sol) polarization free energy of solvation -67.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds